CSPI02G13420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G13420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 13446917 .. 13447312 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG

mRNA sequence

ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG

Coding sequence (CDS)

ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG
Homology
[Close]
BLAST of CSPI02G13420 vs. TrEMBL
Match: A0A0A0LD04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-67
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 1 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQYHSYNYRS
Sbjct: 121 SGQYHSYNYRS 131

[Close]
BLAST of CSPI02G13420 vs. TrEMBL
Match: A0A0A0LJ50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.3e-64
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQY SYNY S
Sbjct: 121 SGQYRSYNYSS 131

[Close]
BLAST of CSPI02G13420 vs. NCBI nr
Match: gi|700202808|gb|KGN57941.1| (hypothetical protein Csa_3G401960 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 5.9e-67
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 1 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQYHSYNYRS
Sbjct: 121 SGQYHSYNYRS 131

[Close]
BLAST of CSPI02G13420 vs. NCBI nr
Match: gi|700206801|gb|KGN61920.1| (hypothetical protein Csa_2G270130 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.7e-64
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQY SYNY S
Sbjct: 121 SGQYRSYNYSS 131

The following BLAST results are available for this feature:
BLAST of CSPI02G13420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G13420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD04_CUCSA4.1e-6797.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1[more]
A0A0A0LJ50_CUCSA3.3e-6493.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1[more]
BLAST of CSPI02G13420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G13420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202808|gb|KGN57941.1|5.9e-6797.71hypothetical protein Csa_3G401960 [Cucumis sativus][more]
gi|700206801|gb|KGN61920.1|4.7e-6493.89hypothetical protein Csa_2G270130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13420.1CSPI02G13420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G13420Csa2G270130Cucumber (Chinese Long) v2cpicuB065
CSPI02G13420CsaV3_2G015930Cucumber (Chinese Long) v3cpicucB080
CSPI02G13420CsGy2G013310Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G13420Watermelon (97103) v1cpiwmB139
CSPI02G13420Watermelon (97103) v1cpiwmB142
CSPI02G13420Watermelon (97103) v1cpiwmB150
CSPI02G13420Cucurbita pepo (Zucchini)cpecpiB054
CSPI02G13420Cucurbita pepo (Zucchini)cpecpiB239
CSPI02G13420Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G13420Cucurbita pepo (Zucchini)cpecpiB668
CSPI02G13420Cucurbita pepo (Zucchini)cpecpiB713
CSPI02G13420Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G13420Bottle gourd (USVL1VR-Ls)cpilsiB100
CSPI02G13420Bottle gourd (USVL1VR-Ls)cpilsiB108
CSPI02G13420Melon (DHL92) v3.6.1cpimedB089
CSPI02G13420Melon (DHL92) v3.6.1cpimedB098
CSPI02G13420Cucumber (Gy14) v2cgybcpiB303
CSPI02G13420Silver-seed gourdcarcpiB0347
CSPI02G13420Silver-seed gourdcarcpiB0380
CSPI02G13420Silver-seed gourdcarcpiB0440
CSPI02G13420Silver-seed gourdcarcpiB0838
CSPI02G13420Silver-seed gourdcarcpiB1051
CSPI02G13420Cucumber (Chinese Long) v3cpicucB117
CSPI02G13420Watermelon (97103) v2cpiwmbB099
CSPI02G13420Watermelon (97103) v2cpiwmbB117
CSPI02G13420Watermelon (97103) v2cpiwmbB127
CSPI02G13420Wax gourdcpiwgoB151
CSPI02G13420Wax gourdcpiwgoB181
CSPI02G13420Wax gourdcpiwgoB194
CSPI02G13420Wild cucumber (PI 183967)cpicpiB080
CSPI02G13420Wild cucumber (PI 183967)cpicpiB089
CSPI02G13420Cucumber (Gy14) v1cgycpiB023
CSPI02G13420Cucumber (Gy14) v1cgycpiB345
CSPI02G13420Cucumber (Gy14) v1cgycpiB546
CSPI02G13420Cucurbita maxima (Rimu)cmacpiB118
CSPI02G13420Cucurbita maxima (Rimu)cmacpiB511
CSPI02G13420Cucurbita maxima (Rimu)cmacpiB547
CSPI02G13420Cucurbita maxima (Rimu)cmacpiB588
CSPI02G13420Cucurbita maxima (Rimu)cmacpiB664
CSPI02G13420Cucurbita moschata (Rifu)cmocpiB104
CSPI02G13420Cucurbita moschata (Rifu)cmocpiB500
CSPI02G13420Cucurbita moschata (Rifu)cmocpiB536
CSPI02G13420Cucurbita moschata (Rifu)cmocpiB577
CSPI02G13420Cucurbita moschata (Rifu)cmocpiB656
CSPI02G13420Cucumber (Chinese Long) v2cpicuB085
CSPI02G13420Cucumber (Chinese Long) v2cpicuB094
CSPI02G13420Melon (DHL92) v3.5.1cpimeB097
CSPI02G13420Melon (DHL92) v3.5.1cpimeB102
CSPI02G13420Melon (DHL92) v3.5.1cpimeB152
CSPI02G13420Watermelon (Charleston Gray)cpiwcgB120
CSPI02G13420Watermelon (Charleston Gray)cpiwcgB125
CSPI02G13420Watermelon (Charleston Gray)cpiwcgB131