CSPI02G13180 (gene) Wild cucumber (PI 183967)

NameCSPI02G13180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEukaryotic translation initiation factor 1A
LocationChr2 : 13259739 .. 13261778 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTTATTTGAATCGGTCGTTTGTTGAACGCGTTCTCTCTCAGCTGGTTTAGGGTTCATCGTTCTCTCTTCTCGCGCTAGATCTTTCTCTCTCTCAGGTTCGTTTCTTTCTCTTAGGCCATTTATTAGAAGATCCTCTTCATTCTCCGATTTTCGTTCGGTGTTCGCCCTTGGTATCTCAGCAGACCTAGGAAGTTTGGTTTCCGTTTGGTGAATCTGTTTGGGGTATTACGAATTATATTTTGTACTGGCTTTCAGCATAGTCTTTTTCTTTCTGGGAATATATGCATCTGAAAATTTATTTGTTTGGCTTTTCTTTATAAAGTATGAGGACATATACATCTCGATAGCTAATCCTTGATTATAGTCTTTTTTTTTCTATGTTGTTTGAATCTGTTCTTTCATTTCATTAAATCTTTTGAATCTGAAATTTTATTTCTTGGATGAATTGCATACTGTTGAATTAGATGTTTATTGGTTAGATTGTTGATATTTGCCCTAAGTTCTATGGATGGGTTTGCGTTTTTCACCTTTTCGTTTGCCTTTTCTTTTGGCTGACGGCATCTTACATAGACTCTGCTCGAAAAGGTGCCGTGATTTTTTTCCTGGTTTTATCTGAGTTTGCACAATTTAGATTTGAAGTGATGATTTGTCTAAAATTCAATATCTATCGGCCATACTGTTTTTGTTATTTTGAGTTTTTCAGGATGACTGCTAGAGAATGAAAAATCTCGGAACATTGTGTTCTGTAGTTCAAGAATATTGTAGTTTGTTCTTTTCTAGACTATCTCATTTGATACAACCCTTTAAATTTAATCAAATTTTGTTAATATTCAAATCCTCGGACTTAGGCATTACTCTGGTTGCCCACTATTTTAAGCTTAGAAGCCTACTCTGGTTCACTTAAAATTTGCATGCTACTTATCTTATTTCACGTGACTCTTCACGTTTGTAGACATCAATTTTTCAGCCTTCAGGTAAATGAACACAAAAAGGAGTGAAGTCTGCCTTCTGTGTGATGGTCTTTTAAACAATTATAGGGATTAAGATGGTTTTTTTATTCAATGCATAGATATTAAATTAGAACGATGACGGTCATTAATATTAAAATTGACAATAGAAGGTTCCTTATATTATTTAGAGTATACATTAAAAACAGCCTGATTCTTGGCTTGGCAGGTTCCTGATCACCTTGTAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAGATTTTCAGTAACCTTTACTTTTAAAGTTTAGAGTTGTGTTTGTGTGGATGATTGGTTGCATGGATTTGCTCCTCTGTTGTACCATTTACTCTTCTACTCTGTTGGAGAATTGGTATTTATTGCATAAAATCCGGTATTGATATATACAAAAAAAAAAAAAAAATCTACATTAAAAATAATTCCTGGAATGGGCATGATAACATTATTTATATGTTATGTTTTAATTATACGTGGACAGAGTCTGTTCACAGGTTTCCCCTTGCATCCTAAAATTACCTCTGCCCAATGATGCAACAAACTCATGCTGTGGAGCAATCTTCTTTGATTTCTAATACTAGCTTTTGCCTCAACCACAATCATCCCCTTCTCTCTCGCTCTCTCACTCTCTCACTCTGCAAACA

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAG

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAG
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-69
Identity = 135/146 (92.47%), Postives = 141/146 (96.58%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGGIDDEDDGAGDDYIEFEDEDIDKI 146
           AGG+D+E D A +DYIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDTA-NDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 125/146 (85.62%), Postives = 136/146 (93.15%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGIDDEDDGAGD-DYIEFEDEDIDKI 146
             +D  ++G GD DYI+FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

BLAST of CSPI02G13180 vs. TrEMBL
Match: A0A0A0LJ19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDGAGD+YIEFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. TrEMBL
Match: B9SSH7_RICCO (Eif-1a, putative OS=Ricinus communis GN=RCOM_0510890 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.5e-75
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.8e-75
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 140/145 (96.55%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYVEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. TrEMBL
Match: F8RW94_HEVBR (Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 270.0 bits (689), Expect = 8.5e-73
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

BLAST of CSPI02G13180 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 243.8 bits (621), Expect = 6.5e-65
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDD 129
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|449458572|ref|XP_004147021.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 2.9e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDGAGD+YIEFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDG GDDY+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|255576103|ref|XP_002528946.1| (PREDICTED: eukaryotic translation initiation factor 1A [Ricinus communis])

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|743755610|ref|XP_010912398.1| (PREDICTED: eukaryotic translation initiation factor 1A [Elaeis guineensis])

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|224129090|ref|XP_002320498.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF1A_ONOVI2.4e-6992.47Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2[more]
IF1A_WHEAT1.2e-6585.62Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2[more]
IF1AX_HUMAN1.7e-5173.79Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI... [more]
IF1AX_MOUSE1.7e-5173.79Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei... [more]
IF1AX_PONAB1.7e-5173.79Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI... [more]
Match NameE-valueIdentityDescription
A0A0A0LJ19_CUCSA2.0e-7599.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1[more]
B9SSH7_RICCO3.5e-7597.93Eif-1a, putative OS=Ricinus communis GN=RCOM_0510890 PE=3 SV=1[more]
A9PCD3_POPTR7.8e-7597.24Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO... [more]
A0A067KF11_JATCU1.0e-7496.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1[more]
F8RW94_HEVBR1.0e-7497.24Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G04520.18.5e-7390.34 Nucleic acid-binding, OB-fold-like protein[more]
AT5G35680.36.5e-6592.19 Nucleic acid-binding, OB-fold-like protein[more]
Match NameE-valueIdentityDescription
gi|449458572|ref|XP_004147021.1|2.9e-7599.31PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus][more]
gi|659115631|ref|XP_008457652.1|3.8e-7598.62PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo][more]
gi|255576103|ref|XP_002528946.1|5.0e-7597.93PREDICTED: eukaryotic translation initiation factor 1A [Ricinus communis][more]
gi|743755610|ref|XP_010912398.1|5.0e-7597.93PREDICTED: eukaryotic translation initiation factor 1A [Elaeis guineensis][more]
gi|224129090|ref|XP_002320498.1|1.1e-7497.24translation initiation factor eIF-1A family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
IPR018104TIF_eIF-1A_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13180.1CSPI02G13180.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 53..109
score: 3.0
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 16..110
score: 18
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 2..145
score: 2.2E
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
score: 7.0
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMsTIGR00523TIGR00523coord: 14..110
score: 8.1
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..93
score: 1.6
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 22..96
score: 31
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 2..144
score: 6.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..144
score: 7.43
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 41..63
scor
NoneNo IPR availablePANTHERPTHR21668:SF5NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATEDcoord: 2..145
score: 2.2E

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G13180Wax gourdcpiwgoB151
CSPI02G13180Wax gourdcpiwgoB181
CSPI02G13180Wax gourdcpiwgoB194
CSPI02G13180Wild cucumber (PI 183967)cpicpiB080
CSPI02G13180Wild cucumber (PI 183967)cpicpiB089
CSPI02G13180Cucumber (Gy14) v1cgycpiB023
CSPI02G13180Cucurbita maxima (Rimu)cmacpiB118
CSPI02G13180Cucurbita maxima (Rimu)cmacpiB511
CSPI02G13180Cucurbita maxima (Rimu)cmacpiB547
CSPI02G13180Cucurbita maxima (Rimu)cmacpiB593
CSPI02G13180Cucurbita maxima (Rimu)cmacpiB664
CSPI02G13180Cucurbita moschata (Rifu)cmocpiB104
CSPI02G13180Cucurbita moschata (Rifu)cmocpiB500
CSPI02G13180Cucurbita moschata (Rifu)cmocpiB536
CSPI02G13180Cucurbita moschata (Rifu)cmocpiB582
CSPI02G13180Cucurbita moschata (Rifu)cmocpiB656
CSPI02G13180Cucumber (Chinese Long) v2cpicuB085
CSPI02G13180Cucumber (Chinese Long) v2cpicuB094
CSPI02G13180Melon (DHL92) v3.5.1cpimeB102
CSPI02G13180Melon (DHL92) v3.5.1cpimeB152
CSPI02G13180Watermelon (Charleston Gray)cpiwcgB120
CSPI02G13180Watermelon (Charleston Gray)cpiwcgB125
CSPI02G13180Watermelon (Charleston Gray)cpiwcgB131
CSPI02G13180Watermelon (97103) v1cpiwmB139
CSPI02G13180Watermelon (97103) v1cpiwmB142
CSPI02G13180Watermelon (97103) v1cpiwmB150
CSPI02G13180Cucurbita pepo (Zucchini)cpecpiB054
CSPI02G13180Cucurbita pepo (Zucchini)cpecpiB239
CSPI02G13180Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G13180Cucurbita pepo (Zucchini)cpecpiB668
CSPI02G13180Cucurbita pepo (Zucchini)cpecpiB706
CSPI02G13180Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G13180Bottle gourd (USVL1VR-Ls)cpilsiB100
CSPI02G13180Bottle gourd (USVL1VR-Ls)cpilsiB108
CSPI02G13180Melon (DHL92) v3.6.1cpimedB098
CSPI02G13180Cucumber (Gy14) v2cgybcpiB303
CSPI02G13180Silver-seed gourdcarcpiB0347
CSPI02G13180Silver-seed gourdcarcpiB0380
CSPI02G13180Silver-seed gourdcarcpiB0440
CSPI02G13180Silver-seed gourdcarcpiB0888
CSPI02G13180Silver-seed gourdcarcpiB1051
CSPI02G13180Cucumber (Chinese Long) v3cpicucB117
CSPI02G13180Watermelon (97103) v2cpiwmbB099
CSPI02G13180Watermelon (97103) v2cpiwmbB117
CSPI02G13180Watermelon (97103) v2cpiwmbB127