CSPI02G13180 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTTTTATTTGAATCGGTCGTTTGTTGAACGCGTTCTCTCTCAGCTGGTTTAGGGTTCATCGTTCTCTCTTCTCGCGCTAGATCTTTCTCTCTCTCAGGTTCGTTTCTTTCTCTTAGGCCATTTATTAGAAGATCCTCTTCATTCTCCGATTTTCGTTCGGTGTTCGCCCTTGGTATCTCAGCAGACCTAGGAAGTTTGGTTTCCGTTTGGTGAATCTGTTTGGGGTATTACGAATTATATTTTGTACTGGCTTTCAGCATAGTCTTTTTCTTTCTGGGAATATATGCATCTGAAAATTTATTTGTTTGGCTTTTCTTTATAAAGTATGAGGACATATACATCTCGATAGCTAATCCTTGATTATAGTCTTTTTTTTTCTATGTTGTTTGAATCTGTTCTTTCATTTCATTAAATCTTTTGAATCTGAAATTTTATTTCTTGGATGAATTGCATACTGTTGAATTAGATGTTTATTGGTTAGATTGTTGATATTTGCCCTAAGTTCTATGGATGGGTTTGCGTTTTTCACCTTTTCGTTTGCCTTTTCTTTTGGCTGACGGCATCTTACATAGACTCTGCTCGAAAAGGTGCCGTGATTTTTTTCCTGGTTTTATCTGAGTTTGCACAATTTAGATTTGAAGTGATGATTTGTCTAAAATTCAATATCTATCGGCCATACTGTTTTTGTTATTTTGAGTTTTTCAGGATGACTGCTAGAGAATGAAAAATCTCGGAACATTGTGTTCTGTAGTTCAAGAATATTGTAGTTTGTTCTTTTCTAGACTATCTCATTTGATACAACCCTTTAAATTTAATCAAATTTTGTTAATATTCAAATCCTCGGACTTAGGCATTACTCTGGTTGCCCACTATTTTAAGCTTAGAAGCCTACTCTGGTTCACTTAAAATTTGCATGCTACTTATCTTATTTCACGTGACTCTTCACGTTTGTAGACATCAATTTTTCAGCCTTCAGGTAAATGAACACAAAAAGGAGTGAAGTCTGCCTTCTGTGTGATGGTCTTTTAAACAATTATAGGGATTAAGATGGTTTTTTTATTCAATGCATAGATATTAAATTAGAACGATGACGGTCATTAATATTAAAATTGACAATAGAAGGTTCCTTATATTATTTAGAGTATACATTAAAAACAGCCTGATTCTTGGCTTGGCAGGTTCCTGATCACCTTGTAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAGATTTTCAGTAACCTTTACTTTTAAAGTTTAGAGTTGTGTTTGTGTGGATGATTGGTTGCATGGATTTGCTCCTCTGTTGTACCATTTACTCTTCTACTCTGTTGGAGAATTGGTATTTATTGCATAAAATCCGGTATTGATATATACAAAAAAAAAAAAAAAATCTACATTAAAAATAATTCCTGGAATGGGCATGATAACATTATTTATATGTTATGTTTTAATTATACGTGGACAGAGTCTGTTCACAGGTTTCCCCTTGCATCCTAAAATTACCTCTGCCCAATGATGCAACAAACTCATGCTGTGGAGCAATCTTCTTTGATTTCTAATACTAGCTTTTGCCTCAACCACAATCATCCCCTTCTCTCTCGCTCTCTCACTCTCTCACTCTGCAAACA ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAG ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAG
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2) HSP 1 Score: 262.7 bits (670), Expect = 2.4e-69 Identity = 135/146 (92.47%), Postives = 141/146 (96.58%), Query Frame = 1
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2) HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65 Identity = 125/146 (85.62%), Postives = 136/146 (93.15%), Query Frame = 1
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51 Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51 Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1
BLAST of CSPI02G13180 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51 Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 1
BLAST of CSPI02G13180 vs. TrEMBL
Match: A0A0A0LJ19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-75 Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. TrEMBL
Match: B9SSH7_RICCO (Eif-1a, putative OS=Ricinus communis GN=RCOM_0510890 PE=3 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 3.5e-75 Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 7.8e-75 Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74 Identity = 140/145 (96.55%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. TrEMBL
Match: F8RW94_HEVBR (Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74 Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 270.0 bits (689), Expect = 8.5e-73 Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 1
BLAST of CSPI02G13180 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 243.8 bits (621), Expect = 6.5e-65 Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1
BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|449458572|ref|XP_004147021.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus]) HSP 1 Score: 289.7 bits (740), Expect = 2.9e-75 Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]) HSP 1 Score: 289.3 bits (739), Expect = 3.8e-75 Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 1
BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|255576103|ref|XP_002528946.1| (PREDICTED: eukaryotic translation initiation factor 1A [Ricinus communis]) HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75 Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|743755610|ref|XP_010912398.1| (PREDICTED: eukaryotic translation initiation factor 1A [Elaeis guineensis]) HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75 Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of CSPI02G13180 vs. NCBI nr
Match: gi|224129090|ref|XP_002320498.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa]) HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74 Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |