CSPI02G12830 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G12830
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	30S ribosomal protein S19, chloroplastic
Location	Chr2 : 13047674 .. 13049858 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGCATACTATTGCTGTTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGCATGGTAGGTCATAAATTGGGAGAATTTGCACCCACTCGCAATTTTCAGGGGCATGTGAAAAATGATAATAGATCTCGTCGTTAATAATTAATATTATGAAAAAAAAAGTGAATAGTGAATATAGATACCTATCGTTCATTACTAAAAGGTAAACCTTATAATAAAGAAGAGAAAAAACATGATAAAGACGAAAAAAAATCGATATGAAAAAAAAAGTGAATCGATTAGTTGTCTTCCTCAATTCATCGTAATATTCCTCAATCCATTACGTGTTAACTTTTTATTCAATTATATTGCTTACACATATATACCACTTCATATATATAATTATATATAGTAAGACGTTCAAATTTTTTTCCTTCGGTGTGTTTTTTTTTATTATTTTGTTATTTTGTTTATCGTATAGTAATATTAAGTTGTTAGTCATATAAACATTTATATTTTAAATGTGTACCCATTACATTTCTAAAGTGGTTTATTACGTTAATTTAATTAAAGCACTCAATTAAGTTCAATCCATCAAGTTAATAATATTATTTCTTATTTGGGTTTAAGTTTTTTTTTTTAAAAAAATTAATTCTATAGGAGTGTTGGAGGGATTTAAACTACACGACTGCTAACTCCTCCTTGGCTCCTCATCATTTTTTTCTTCAAATTCGAATCTAGAAGCAAATCAGAATAATAAATAGATTTTTTTAAAAAAGAAATAAAATAGAACCGATAGACCTTCCAAAATAAACTAAACTAGAATAATAAAGTATTTACAATACATGTATAAAATAGACTTTACAAAATTGCAAATAAATATTTCTACAATGTATCACAAAACCAAACAAAGGAAGAATAAAGAATTGGAAGAAGAGAAAAAAACACGTTAATGAACCACAAAATATCTCAAATTTGAGACATTGAAAAATGTGTGTGCATCTAGCATATGAGTTGAGAGAGTGAAATTAGAATAACAACGTGCGACAATCGAAATCTTGAAATCAATGTGACTTTTTGAATTTTTCGATAAAACATCAATTAACCATCAAATCTTTAATTAAAAATTAAAACCCTAAATTATCAAGAGTGATTTAGGTGGGTTAAAAAAAAAACATTCCCCATTTGGTTCACTAATAATTAAAGAGTTTATACCTTATTATTCACATCAAATCACATTTTTCTCATCCTTATTCTCAACTTCCTCAAAAACCTTTCACTTACACCAGAGGGCTCACTTCTAGCGTTCACATTCACATCGGGTTAGGGATGACATATCCAAGTCAACGAGTTTCTCTAGTTTAAAAGTAAACATTGGATGAATATCTTTCGGACCACGTTAAGAAAGCAAACCCTAGTTTGGATGACTTTTCCAAAGCCTTGCCCTGATTTTAAAAGTAGAAGTGTGACGAAGAACGTTCTAGCCCAATGGTGAATTGTATTTGACCCTCAGATACATTAACATCTATAAAAAGAACATTAAAAGTGTTTGGGACAATGAGCAAATTATTATAGTCTTAGGTTATTGAAGTTTAATTATAATAGTTAGCGTTTGAGGTATAGTTTGTTTTTGTTTGGATATTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATGAGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATTGACATCCTATGCGTTATCCCATGCTAATGTATACAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCAGAGGCACAACCCGGCTAGTTAAGGCCAGGAGCGCATTGCCGGCAAAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA

mRNA sequence

ATGATTGGGCATACTATTGCTGTTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGCATGAATTTCACCTCTGACTATGAAATGAGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATTGACATCCTATGCGAGCGCATTGCCGGCAAAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA

Coding sequence (CDS)

ATGATTGGGCATACTATTGCTGTTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGCATGAATTTCACCTCTGACTATGAAATGAGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATTGACATCCTATGCGAGCGCATTGCCGGCAAAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA

Homology

[Close]

BLAST of CSPI02G12830 vs. Swiss-Prot
Match: RR19_CUCSA (30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1  MIGHTIAVHNGKDHLPVYITDRM 24
          MIGHTIAVHNGKDHLPVYITDRM
Sbjct: 44 MIGHTIAVHNGKDHLPVYITDRM 66

[Close]

BLAST of CSPI02G12830 vs. Swiss-Prot
Match: RR19_LIRTU (30S ribosomal protein S19, chloroplastic OS=Liriodendron tulipifera GN=rps19 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-06
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1  MIGHTIAVHNGKDHLPVYITDRM 24
          MIGHTIA+HNGKDHLP+YITDRM
Sbjct: 44 MIGHTIAIHNGKDHLPIYITDRM 66

[Close]

BLAST of CSPI02G12830 vs. Swiss-Prot
Match: RR19_CYCTA (30S ribosomal protein S19, chloroplastic OS=Cycas taitungensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-06
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1  MIGHTIAVHNGKDHLPVYITDRM 24
          MIGHTIAVHNGK+HLP+YITDRM
Sbjct: 44 MIGHTIAVHNGKEHLPIYITDRM 66

[Close]

BLAST of CSPI02G12830 vs. Swiss-Prot
Match: RR19_MORIN (30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-06
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1  MIGHTIAVHNGKDHLPVYITDRM 24
          MIGHTIAVHNGK+HLP+YITDRM
Sbjct: 44 MIGHTIAVHNGKEHLPIYITDRM 66

[Close]

BLAST of CSPI02G12830 vs. Swiss-Prot
Match: RR19_PEA (30S ribosomal protein S19, chloroplastic OS=Pisum sativum GN=rps19 PE=3 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-06
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1  MIGHTIAVHNGKDHLPVYITDRM 24
          MIGHTIA+HNGK+HLPVYITDRM
Sbjct: 44 MIGHTIAIHNGKEHLPVYITDRM 66

[Close]

BLAST of CSPI02G12830 vs. TrEMBL
Match: A0A072TIE8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0055s0030 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.9e-44
Identity = 94/124 (75.81%), Postives = 98/124 (79.03%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
           NFTSDYE++MPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 457 NFTSDYEIQMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYPERRLALSQERIAGRRDEPT 516

Query: 84  GAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP 128
           GAHHRRTDRPNPR    LALQ IL+KGFRLYSFQLPDS SPVLLFIVTTSPC DWVICAP
Sbjct: 517 GAHHRRTDRPNPRSNYELALQWILIKGFRLYSFQLPDSMSPVLLFIVTTSPCYDWVICAP 576

[Close]

BLAST of CSPI02G12830 vs. TrEMBL
Match: A0A0R0GR22_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G019700 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-42
Identity = 93/119 (78.15%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLAL 83
           NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLAL
Sbjct: 798 NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALTGITAAAGTRLAL 857

Query: 84  QLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 143
           Q ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Sbjct: 858 QWILVKGFRLYSFQLPDSMSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 916

[Close]

BLAST of CSPI02G12830 vs. TrEMBL
Match: A0A0R0GHF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G022200 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-42
Identity = 93/119 (78.15%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLAL 83
           NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLAL
Sbjct: 808 NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALTGITAAAGTRLAL 867

Query: 84  QLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 143
           Q ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Sbjct: 868 QWILVKGFRLYSFQLPDSMSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 926

[Close]

BLAST of CSPI02G12830 vs. TrEMBL
Match: A0A0R0GH74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G017200 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.8e-37
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 24   NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
            NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 934  NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALRQERIAGRRDEPT 993

Query: 84   GAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSP 115
            GAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSP
Sbjct: 994  GAHRRRTDRPNPRLALQWILVKGFRLYSFQLPDSMSPVLLFIVTTSP 1040

[Close]

BLAST of CSPI02G12830 vs. TrEMBL
Match: A0A0R0GUK0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G015300 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.8e-37
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 24   NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
            NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 959  NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALRQERIAGRRDEPT 1018

Query: 84   GAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSP 115
            GAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSP
Sbjct: 1019 GAHRRRTDRPNPRLALQWILVKGFRLYSFQLPDSMSPVLLFIVTTSP 1065

[Close]

BLAST of CSPI02G12830 vs. NCBI nr
Match: gi|922327137|ref|XP_013442961.1| (hypothetical protein MTR_0055s0030 [Medicago truncatula])

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 94/124 (75.81%), Postives = 98/124 (79.03%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
           NFTSDYE++MPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 457 NFTSDYEIQMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYPERRLALSQERIAGRRDEPT 516

Query: 84  GAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP 128
           GAHHRRTDRPNPR    LALQ IL+KGFRLYSFQLPDS SPVLLFIVTTSPC DWVICAP
Sbjct: 517 GAHHRRTDRPNPRSNYELALQWILIKGFRLYSFQLPDSMSPVLLFIVTTSPCYDWVICAP 576

[Close]

BLAST of CSPI02G12830 vs. NCBI nr
Match: gi|947068941|gb|KRH17832.1| (hypothetical protein GLYMA_13G019700 [Glycine max])

HSP 1 Score: 178.7 bits (452), Expect = 7.1e-42
Identity = 93/119 (78.15%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLAL 83
           NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLAL
Sbjct: 798 NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALTGITAAAGTRLAL 857

Query: 84  QLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 143
           Q ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Sbjct: 858 QWILVKGFRLYSFQLPDSMSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 916

[Close]

BLAST of CSPI02G12830 vs. NCBI nr
Match: gi|947068966|gb|KRH17857.1| (hypothetical protein GLYMA_13G022200 [Glycine max])

HSP 1 Score: 178.7 bits (452), Expect = 7.1e-42
Identity = 93/119 (78.15%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLAL 83
           NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLAL
Sbjct: 808 NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALTGITAAAGTRLAL 867

Query: 84  QLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 143
           Q ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Sbjct: 868 QWILVKGFRLYSFQLPDSMSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP 926

[Close]

BLAST of CSPI02G12830 vs. NCBI nr
Match: gi|947068913|gb|KRH17804.1| (hypothetical protein GLYMA_13G017200 [Glycine max])

HSP 1 Score: 162.2 bits (409), Expect = 6.9e-37
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 24   NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
            NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 934  NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALRQERIAGRRDEPT 993

Query: 84   GAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSP 115
            GAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSP
Sbjct: 994  GAHRRRTDRPNPRLALQWILVKGFRLYSFQLPDSMSPVLLFIVTTSP 1040

[Close]

BLAST of CSPI02G12830 vs. NCBI nr
Match: gi|947068889|gb|KRH17780.1| (hypothetical protein GLYMA_13G015300 [Glycine max])

HSP 1 Score: 162.2 bits (409), Expect = 6.9e-37
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 24   NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILC----------------ERIAGKRDEPT 83
            NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL                 ERIAG+RDEPT
Sbjct: 959  NFTSDYEIRMPPTVPVNHYSDPEGQHNRIRILWCYPMLMYTERRLALRQERIAGRRDEPT 1018

Query: 84   GAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSP 115
            GAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSP
Sbjct: 1019 GAHRRRTDRPNPRLALQWILVKGFRLYSFQLPDSMSPVLLFIVTTSP 1065

The following BLAST results are available for this feature:

BLAST of CSPI02G12830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR19_CUCSA	2.2e-06	100.00	30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1	[more]
RR19_LIRTU	3.7e-06	91.30	30S ribosomal protein S19, chloroplastic OS=Liriodendron tulipifera GN=rps19 PE=...	[more]
RR19_CYCTA	8.2e-06	91.30	30S ribosomal protein S19, chloroplastic OS=Cycas taitungensis GN=rps19 PE=3 SV=...	[more]
RR19_MORIN	8.2e-06	91.30	30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1	[more]
RR19_PEA	8.2e-06	91.30	30S ribosomal protein S19, chloroplastic OS=Pisum sativum GN=rps19 PE=3 SV=2	[more]

BLAST of CSPI02G12830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072TIE8_MEDTR	6.9e-44	75.81	Uncharacterized protein OS=Medicago truncatula GN=MTR_0055s0030 PE=4 SV=1	[more]
A0A0R0GR22_SOYBN	5.0e-42	78.15	Uncharacterized protein OS=Glycine max GN=GLYMA_13G019700 PE=4 SV=1	[more]
A0A0R0GHF8_SOYBN	5.0e-42	78.15	Uncharacterized protein OS=Glycine max GN=GLYMA_13G022200 PE=4 SV=1	[more]
A0A0R0GH74_SOYBN	4.8e-37	77.57	Uncharacterized protein OS=Glycine max GN=GLYMA_13G017200 PE=4 SV=1	[more]
A0A0R0GUK0_SOYBN	4.8e-37	77.57	Uncharacterized protein OS=Glycine max GN=GLYMA_13G015300 PE=4 SV=1	[more]

BLAST of CSPI02G12830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G12830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922327137\|ref\|XP_013442961.1\|	1.0e-43	75.81	hypothetical protein MTR_0055s0030 [Medicago truncatula]	[more]
gi\|947068941\|gb\|KRH17832.1\|	7.1e-42	78.15	hypothetical protein GLYMA_13G019700 [Glycine max]	[more]
gi\|947068966\|gb\|KRH17857.1\|	7.1e-42	78.15	hypothetical protein GLYMA_13G022200 [Glycine max]	[more]
gi\|947068913\|gb\|KRH17804.1\|	6.9e-37	77.57	hypothetical protein GLYMA_13G017200 [Glycine max]	[more]
gi\|947068889\|gb\|KRH17780.1\|	6.9e-37	77.57	hypothetical protein GLYMA_13G015300 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002222	Ribosomal_S19
IPR023575	Ribosomal_S19_SF

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G12830.1	CSPI02G12830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 1..23 score: 5.
IPR023575	Ribosomal protein S19, superfamily	GENE3D	G3DSA:3.30.860.10		coord: 1..23 score: 1.
IPR023575	Ribosomal protein S19, superfamily	unknown	SSF54570	Ribosomal protein S19	coord: 1..23 score: 2.0
None	No IPR available	PANTHER	PTHR33047	FAMILY NOT NAMED	coord: 24..56 score: 1.2
None	No IPR available	PANTHER	PTHR33047:SF4	SUBFAMILY NOT NAMED	coord: 24..56 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G12830	Wild cucumber (PI 183967)	cpicpiB089
CSPI02G12830	Cucurbita maxima (Rimu)	cmacpiB441
CSPI02G12830	Cucurbita maxima (Rimu)	cmacpiB547
CSPI02G12830	Cucurbita maxima (Rimu)	cmacpiB593
CSPI02G12830	Cucurbita moschata (Rifu)	cmocpiB429
CSPI02G12830	Cucurbita moschata (Rifu)	cmocpiB500
CSPI02G12830	Cucurbita moschata (Rifu)	cmocpiB536
CSPI02G12830	Cucurbita moschata (Rifu)	cmocpiB582
CSPI02G12830	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G12830	Cucumber (Chinese Long) v2	cpicuB094
CSPI02G12830	Melon (DHL92) v3.5.1	cpimeB102
CSPI02G12830	Melon (DHL92) v3.5.1	cpimeB123
CSPI02G12830	Watermelon (Charleston Gray)	cpiwcgB111
CSPI02G12830	Watermelon (Charleston Gray)	cpiwcgB131
CSPI02G12830	Watermelon (97103) v1	cpiwmB150
CSPI02G12830	Watermelon (97103) v1	cpiwmB157
CSPI02G12830	Cucurbita pepo (Zucchini)	cpecpiB236
CSPI02G12830	Cucurbita pepo (Zucchini)	cpecpiB269
CSPI02G12830	Cucurbita pepo (Zucchini)	cpecpiB542
CSPI02G12830	Cucurbita pepo (Zucchini)	cpecpiB706
CSPI02G12830	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G12830	Bottle gourd (USVL1VR-Ls)	cpilsiB097
CSPI02G12830	Melon (DHL92) v3.6.1	cpimedB096
CSPI02G12830	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G12830	Cucumber (Gy14) v2	cgybcpiB062
CSPI02G12830	Cucumber (Gy14) v2	cgybcpiB303
CSPI02G12830	Silver-seed gourd	carcpiB0347
CSPI02G12830	Silver-seed gourd	carcpiB0468
CSPI02G12830	Silver-seed gourd	carcpiB0860
CSPI02G12830	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G12830	Cucumber (Chinese Long) v3	cpicucB118
CSPI02G12830	Watermelon (97103) v2	cpiwmbB112
CSPI02G12830	Watermelon (97103) v2	cpiwmbB124
CSPI02G12830	Wax gourd	cpiwgoB181