CSPI02G12210 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G12210
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	Chr2 : 12492615 .. 12496782 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAACGTAGAAAGGAGCAAACAACTCGGAAGTTACTTCACCCTTCCATACATCCTAATTCGTTGGTGAAATTCAAATACCATTTTAGCGTTTAGTCTTTCTTTATGTTGAAATGAACTGAAATTACATTTCTTATAGTTCAACTTTTTTGCTCCCTACAGCTAATTTTTCCTTTTTTTGATGCCAGGTTTATACCAATGGAACAACAGAAAGAGAAACCATCAACTGCTGCAAACCCACCCATTCCTTCCTGTCGAAAGAAGAAAAATGAAGAAGCTACATTTCTGGAGGATTTGAAGGATCACATCGACGAATTCATTAATGCATCAATGGACGAACACAAATCATGCTTCAAAAAGACTATCAACAAGGTTTACTTCTATATCCTTCTCTGAGCATCTAAAAAGAAATAAGTCATGTTCCTGAGGTATGTGGTGGATATATTTATTCACAAAATTCAAAAAAACTTTTGGTTGGTTACAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAATGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAAATTATCTTTTCTTCCTTTGTTCAAGTATAGTTTGTCTTCATCTTCAACCAACTGCATGAAGTCTCATGATTCTTGTTTTTGATTTATTTCTACTGTTTATAGTCCATGTGAATTGCTACTGTTGTTTGTGTTTCCCTGATGAGCTATAAATAGCTGTTATATTTTGCAAAAGAGTACTGTTTCTTGTTTGTTTGTTTACCTCTTGATGAATGAGAGTTTGCCTAATATTAAGGCTTAACGTGTTTGTTTCTTAATTTTAGCTTTTGTCATAAACATGTTTTGAAACTGTTCAAAACTATA

mRNA sequence

ATGGAACAACAGAAAGAGAAACCATCAACTGCTGCAAACCCACCCATTCCTTCCTGTCGAAAGAAGAAAAATGAAGAAGCTACATTTCTGGAGGATTTGAAGGATCACATCGACGAATTCATTAATGCATCAATGGACGAACACAAATCATGCTTCAAAAAGACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAATGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Coding sequence (CDS)

ATGGAACAACAGAAAGAGAAACCATCAACTGCTGCAAACCCACCCATTCCTTCCTGTCGAAAGAAGAAAAATGAAGAAGCTACATTTCTGGAGGATTTGAAGGATCACATCGACGAATTCATTAATGCATCAATGGACGAACACAAATCATGCTTCAAAAAGACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAATGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Homology

[Close]

BLAST of CSPI02G12210 vs. TrEMBL
Match: A0A0A0LIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 16  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 75
           MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF
Sbjct: 1   MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 76  RMSKVVADRNSETNGVESSLPLRTTVSE 104
           RMSKVVADRNSETNGVESSLPLRTTVSE
Sbjct: 61  RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of CSPI02G12210 vs. TrEMBL
Match: W9R2R5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 16  MEQQKEKP----STAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTI 75
           ME  K +P    S A  PP+ SCRKKK+EEATFLED+KDHIDEFI+ASMDEHK+CFKKTI
Sbjct: 1   MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 76  NKMFRMSKVVADRNSETNGVESSLPLRTTV 102
            KMF MSK+VA+R+SE  GVESSLPL+TTV
Sbjct: 61  QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

[Close]

BLAST of CSPI02G12210 vs. TrEMBL
Match: A0A022R7H7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 21  EKPSTAA-NPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFRMSK 80
           EKPS+AA NP + SCR+KKNE ATFLED+KDHIDEFI+ASMDEHK+CF+KTI KMF MSK
Sbjct: 9   EKPSSAAPNPAMASCRRKKNESATFLEDVKDHIDEFISASMDEHKTCFQKTIKKMFSMSK 68

Query: 81  VVADRNSETNGVESSLPLRTTVSE 104
           VVA+R+SET  VESSLPL+TTV+E
Sbjct: 69  VVAERSSETKEVESSLPLQTTVAE 92

[Close]

BLAST of CSPI02G12210 vs. TrEMBL
Match: M5W7M8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019871mg PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 15  PMEQQKEKPS-TAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINK 74
           P  Q + KPS  AA PPI SCR+KK ++A FLEDLKDHIDEF+NASMDEHK+CFKKT+ K
Sbjct: 4   PKSQLENKPSPAAATPPITSCRRKKKDDANFLEDLKDHIDEFVNASMDEHKTCFKKTMQK 63

Query: 75  MFRMSKVVADRNSETNGVESSLPLRTTVSE 104
           MF MSK+VA+R+S T  VESSLPLRTTV++
Sbjct: 64  MFGMSKIVAERSSGTKEVESSLPLRTTVAD 93

[Close]

BLAST of CSPI02G12210 vs. TrEMBL
Match: A0A166GEX9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001537 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.2e-26
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 17  EQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFR 76
           E+Q++ P+  A P IPSCRKKK+EEATFLED+K+HIDEFI+ASMDEH SCFKKTI+KMF 
Sbjct: 4   EEQRQSPAVTA-PAIPSCRKKKSEEATFLEDVKEHIDEFIHASMDEHASCFKKTIHKMFG 63

Query: 77  MSKVVADRNSETNGVESSLPLRTT 101
           MSK+VA+RNS T  VESSLPL+TT
Sbjct: 64  MSKIVAERNSRTEEVESSLPLQTT 86

[Close]

BLAST of CSPI02G12210 vs. TAIR10
Match: AT3G05570.1 (AT3G05570.1 unknown protein)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-23
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 16  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 75
           ME QK +      P   SCRKK  ++A FLED+KDHID+FINASMD+HK+CF KTI KMF
Sbjct: 1   METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 76  RMSKVVADR--NSETNGVESSLPLRTTVSE 104
            +SK VAD+  +    GVES LPL+TTVS+
Sbjct: 61  GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of CSPI02G12210 vs. TAIR10
Match: AT4G39235.1 (AT4G39235.1 unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 5.7e-23
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 29  PPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFRMSKVVADRNS-E 88
           P + SCRKK  ++ATF ED+KDHID+FI+ASMDEHKSCF+KTI KMF +SK VA++ + E
Sbjct: 11  PAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEKQAVE 70

Query: 89  TNGVESSLPLRTTVSE 104
             GVES LPL+TTVSE
Sbjct: 71  AKGVESQLPLQTTVSE 86

[Close]

BLAST of CSPI02G12210 vs. TAIR10
Match: AT2G21640.1 (AT2G21640.1 Encodes a protein of unknown function that is a marker for oxidative stress response.)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-13
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 28  NPPIP-----SCRKK-KNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKM---FRMS 87
           NPP P     SCRK+ K++ ATF  +LKDH+DEFI+ASMDEHK+CFK T++K+   F  +
Sbjct: 19  NPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKA 78

Query: 88  KVVADRNSETNG-VESSLPLRTTVSE 104
           + VA++  E    VE   PL+T V++
Sbjct: 79  EAVAEKQIEAKEVVEIHSPLQTAVTK 104

[Close]

BLAST of CSPI02G12210 vs. NCBI nr
Match: gi|449462228|ref|XP_004148843.1| (PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 16  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 75
           MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF
Sbjct: 1   MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 76  RMSKVVADRNSETNGVESSLPLRTTVSE 104
           RMSKVVADRNSETNGVESSLPLRTTVSE
Sbjct: 61  RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of CSPI02G12210 vs. NCBI nr
Match: gi|659122040|ref|XP_008460939.1| (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 16  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 75
           MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 1   MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 76  RMSKVVADRNSETNGVESSLPLRTTVSE 104
           RMSKVVADRNSETNGVESSLPLRTTVSE
Sbjct: 61  RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of CSPI02G12210 vs. NCBI nr
Match: gi|1009133080|ref|XP_015883712.1| (PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba])

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 19  QKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFRMS 78
           +KE  S  A PP+ SCRKKK +EATFLED+KDHIDEFI+ASMDEHK+CFKKTI KMFRMS
Sbjct: 9   EKEPSSAPAKPPVTSCRKKKKDEATFLEDIKDHIDEFIHASMDEHKTCFKKTIEKMFRMS 68

Query: 79  KVVADRNSETNGVESSLPLRTTV 102
           KVVA+RNSET  VESSLPL+TTV
Sbjct: 69  KVVAERNSETKEVESSLPLKTTV 91

[Close]

BLAST of CSPI02G12210 vs. NCBI nr
Match: gi|703071014|ref|XP_010088925.1| (hypothetical protein L484_018552 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 16  MEQQKEKP----STAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTI 75
           ME  K +P    S A  PP+ SCRKKK+EEATFLED+KDHIDEFI+ASMDEHK+CFKKTI
Sbjct: 1   MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 76  NKMFRMSKVVADRNSETNGVESSLPLRTTV 102
            KMF MSK+VA+R+SE  GVESSLPL+TTV
Sbjct: 61  QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

[Close]

BLAST of CSPI02G12210 vs. NCBI nr
Match: gi|645263544|ref|XP_008237285.1| (PREDICTED: uncharacterized protein LOC103336028 [Prunus mume])

HSP 1 Score: 129.0 bits (323), Expect = 4.7e-27
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 15  PMEQQKEKPSTA-ANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINK 74
           P  Q + KPS A A PPI SCR+KK ++A FLEDLKDHIDEF+NASMDEHK+CFKKT+ K
Sbjct: 4   PQSQHENKPSPAVATPPITSCRRKKKDDANFLEDLKDHIDEFVNASMDEHKTCFKKTMQK 63

Query: 75  MFRMSKVVADRNSETNGVESSLPLRTTVSE 104
           MF MSK+VA+RNS T  VESSLPLRTTV++
Sbjct: 64  MFGMSKIVAERNSGTKEVESSLPLRTTVAD 93

The following BLAST results are available for this feature:

BLAST of CSPI02G12210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G12210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ4_CUCSA	2.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1	[more]
W9R2R5_9ROSA	2.5e-27	72.22	Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1	[more]
A0A022R7H7_ERYGU	5.6e-27	77.38	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1	[more]
M5W7M8_PRUPE	2.1e-26	70.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019871mg PE=4 SV=1	[more]
A0A166GEX9_DAUCA	6.2e-26	73.81	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001537 PE=4 SV=1	[more]

BLAST of CSPI02G12210 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05570.1	4.4e-23	58.89	unknown protein	[more]
AT4G39235.1	5.7e-23	67.11	unknown protein	[more]
AT2G21640.1	3.2e-13	48.84	Encodes a protein of unknown function that is a marker for oxidative...	[more]

BLAST of CSPI02G12210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462228\|ref\|XP_004148843.1\|	3.4e-41	100.00	PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus]	[more]
gi\|659122040\|ref\|XP_008460939.1\|	1.3e-40	98.86	PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo]	[more]
gi\|1009133080\|ref\|XP_015883712.1\|	2.5e-28	78.31	PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba]	[more]
gi\|703071014\|ref\|XP_010088925.1\|	3.6e-27	72.22	hypothetical protein L484_018552 [Morus notabilis]	[more]
gi\|645263544\|ref\|XP_008237285.1\|	4.7e-27	71.11	PREDICTED: uncharacterized protein LOC103336028 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G12210.2	CSPI02G12210.2	mRNA
CSPI02G12210.1	CSPI02G12210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 2..88 score: 2.4
None	No IPR available	PANTHER	PTHR33622:SF3	SUBFAMILY NOT NAMED	coord: 2..88 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G12210	Cla016560	Watermelon (97103) v1	cpiwmB157
CSPI02G12210	Csa2G247070	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G12210	MELO3C023293	Melon (DHL92) v3.5.1	cpimeB090
CSPI02G12210	ClCG11G004390	Watermelon (Charleston Gray)	cpiwcgB111
CSPI02G12210	Lsi10G003680	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G12210	MELO3C023293.2	Melon (DHL92) v3.6.1	cpimedB081
CSPI02G12210	CsaV3_2G014720	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G12210	Cla97C11G211140	Watermelon (97103) v2	cpiwmbB112
CSPI02G12210	Bhi10G001618	Wax gourd	cpiwgoB181
CSPI02G12210	Cucsa.109610	Cucumber (Gy14) v1	cgycpiB134
CSPI02G12210	CmaCh02G003960	Cucurbita maxima (Rimu)	cmacpiB593
CSPI02G12210	CmaCh20G008490	Cucurbita maxima (Rimu)	cmacpiB547
CSPI02G12210	CmoCh20G008580	Cucurbita moschata (Rifu)	cmocpiB536
CSPI02G12210	CmoCh02G004020	Cucurbita moschata (Rifu)	cmocpiB582
CSPI02G12210	Cp4.1LG05g12660	Cucurbita pepo (Zucchini)	cpecpiB706
CSPI02G12210	Cp4.1LG16g02440	Cucurbita pepo (Zucchini)	cpecpiB269
CSPI02G12210	CsGy2G012200	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G12210	Carg22944	Silver-seed gourd	carcpiB0926
CSPI02G12210	Carg26480	Silver-seed gourd	carcpiB0509

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G12210	Wild cucumber (PI 183967)	cpicpiB065
CSPI02G12210	Cucumber (Gy14) v1	cgycpiB503
CSPI02G12210	Cucumber (Gy14) v1	cgycpiB556
CSPI02G12210	Cucurbita maxima (Rimu)	cmacpiB441
CSPI02G12210	Cucurbita moschata (Rifu)	cmocpiB429
CSPI02G12210	Cucurbita moschata (Rifu)	cmocpiB500
CSPI02G12210	Melon (DHL92) v3.5.1	cpimeB102
CSPI02G12210	Melon (DHL92) v3.5.1	cpimeB123
CSPI02G12210	Watermelon (Charleston Gray)	cpiwcgB131
CSPI02G12210	Watermelon (97103) v1	cpiwmB150
CSPI02G12210	Cucurbita pepo (Zucchini)	cpecpiB236
CSPI02G12210	Cucurbita pepo (Zucchini)	cpecpiB542
CSPI02G12210	Bottle gourd (USVL1VR-Ls)	cpilsiB097
CSPI02G12210	Melon (DHL92) v3.6.1	cpimedB096
CSPI02G12210	Cucumber (Gy14) v2	cgybcpiB062
CSPI02G12210	Cucumber (Gy14) v2	cgybcpiB303
CSPI02G12210	Silver-seed gourd	carcpiB0347
CSPI02G12210	Cucumber (Chinese Long) v3	cpicucB118
CSPI02G12210	Watermelon (97103) v2	cpiwmbB124
CSPI02G12210	Wax gourd	cpiwgoB146