CSPI02G10420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G10420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProline-rich protein
LocationChr2 : 10499242 .. 10499652 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCCTCAAAACACCTACCTCATTAATGGCAAAAAAAATAACCCCATCTATTGCTCTAAAAGGCCACAAAGTATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGATGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTCCAACTCCAACCAAGAACTTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCTCACTAA

mRNA sequence

ATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGATGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTCCAACTCCAACCAAGAACTTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCTCACTAA

Coding sequence (CDS)

ATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGATGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTCCAACTCCAACCAAGAACTTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCTCACTAA
Homology
[Close]
BLAST of CSPI02G10420 vs. TrEMBL
Match: A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-46
Identity = 102/112 (91.07%), Postives = 102/112 (91.07%), Query Frame = 1 

Query: 1   MRFPIGKTQTRKATMFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTT 60
           MRFPIGKTQTRKATMF KYFLLLLLA VLLTTTQALKHP NSNQE IPSTDLTHGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           ITDPNEESKFFRRPSPYKKPYKRPP      YKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPP------YKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10420 vs. TrEMBL
Match: A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-45
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 1   MRFPIGKTQTRKATMFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTT 60
           MRFP+GKTQT KATMFLKYFLLLLLA VLLTTTQALKHPSNSNQE+IP+TD+THGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           ITDPNEESKF+RRPSPYKKPYKRPP      YK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPP------YKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10420 vs. TrEMBL
Match: Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 88/98 (89.80%), Postives = 88/98 (89.80%), Query Frame = 1 

Query: 15  MFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MF KYFLLLLLA VLLTTTQALKHP NSNQE IPSTDLTHGKLPTTITDPNEESKFFRRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           SPYKKPYKRPP      YKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPP------YKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10420 vs. NCBI nr
Match: gi|700206487|gb|KGN61606.1| (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 8.4e-46
Identity = 102/112 (91.07%), Postives = 102/112 (91.07%), Query Frame = 1 

Query: 1   MRFPIGKTQTRKATMFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTT 60
           MRFPIGKTQTRKATMF KYFLLLLLA VLLTTTQALKHP NSNQE IPSTDLTHGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           ITDPNEESKFFRRPSPYKKPYKRPP      YKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPP------YKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10420 vs. NCBI nr
Match: gi|778668784|ref|XP_004147144.2| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 1   MRFPIGKTQTRKATMFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTT 60
           MRFP+GKTQT KATMFLKYFLLLLLA VLLTTTQALKHPSNSNQE+IP+TD+THGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           ITDPNEESKF+RRPSPYKKPYKRPP      YK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPP------YKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10420 vs. NCBI nr
Match: gi|525507184|ref|NP_001267631.1| (uncharacterized protein LOC101210961 precursor [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 88/98 (89.80%), Postives = 88/98 (89.80%), Query Frame = 1 

Query: 15  MFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MF KYFLLLLLA VLLTTTQALKHP NSNQE IPSTDLTHGKLPTTITDPNEESKFFRRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
           SPYKKPYKRPP      YKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPP------YKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10420 vs. NCBI nr
Match: gi|659121395|ref|XP_008460638.1| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 1 

Query: 15  MFLKYFLLLLLADVLLTTTQALKHPSNSNQELIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MFLKYFLLLLLA VLL+TTQALKHPS S+QE+IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 113
            PYKKPYKRPP      YKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  FPYKKPYKRPP------YKKYPPYKKRPPYKKYPPSSH 92

The following BLAST results are available for this feature:
BLAST of CSPI02G10420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G10420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNP2_CUCSA5.9e-4691.07Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1[more]
A0A0A0LI79_CUCSA1.7e-4587.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1[more]
Q8H0R6_CUCSA2.2e-3789.80Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1[more]
BLAST of CSPI02G10420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G10420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206487|gb|KGN61606.1|8.4e-4691.07hypothetical protein Csa_2G176690 [Cucumis sativus][more]
gi|778668784|ref|XP_004147144.2|2.4e-4587.50PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus][more]
gi|525507184|ref|NP_001267631.1|3.2e-3789.80uncharacterized protein LOC101210961 precursor [Cucumis sativus][more]
gi|659121395|ref|XP_008460638.1|1.6e-3381.63PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G10420.1CSPI02G10420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G10420Wax gourdcpiwgoB122
CSPI02G10420Wax gourdcpiwgoB142
CSPI02G10420Wax gourdcpiwgoB147
CSPI02G10420Wild cucumber (PI 183967)cpicpiB057
CSPI02G10420Wild cucumber (PI 183967)cpicpiB064
CSPI02G10420Cucumber (Gy14) v1cgycpiB378
CSPI02G10420Cucumber (Gy14) v1cgycpiB565
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB240
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB354
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB515
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB591
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB825
CSPI02G10420Cucurbita maxima (Rimu)cmacpiB899
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB503
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB228
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB346
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB580
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB812
CSPI02G10420Cucurbita moschata (Rifu)cmocpiB879
CSPI02G10420Cucumber (Chinese Long) v2cpicuB065
CSPI02G10420Cucumber (Chinese Long) v2cpicuB069
CSPI02G10420Cucumber (Chinese Long) v2cpicuB073
CSPI02G10420Melon (DHL92) v3.5.1cpimeB141
CSPI02G10420Melon (DHL92) v3.5.1cpimeB144
CSPI02G10420Watermelon (Charleston Gray)cpiwcgB141
CSPI02G10420Watermelon (Charleston Gray)cpiwcgB156
CSPI02G10420Watermelon (Charleston Gray)cpiwcgB163
CSPI02G10420Watermelon (97103) v1cpiwmB125
CSPI02G10420Watermelon (97103) v1cpiwmB121
CSPI02G10420Watermelon (97103) v1cpiwmB174
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB126
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB241
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB306
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB598
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB716
CSPI02G10420Cucurbita pepo (Zucchini)cpecpiB851
CSPI02G10420Bottle gourd (USVL1VR-Ls)cpilsiB085
CSPI02G10420Bottle gourd (USVL1VR-Ls)cpilsiB125
CSPI02G10420Bottle gourd (USVL1VR-Ls)cpilsiB127
CSPI02G10420Melon (DHL92) v3.6.1cpimedB134
CSPI02G10420Melon (DHL92) v3.6.1cpimedB137
CSPI02G10420Cucumber (Gy14) v2cgybcpiB056
CSPI02G10420Cucumber (Gy14) v2cgybcpiB100
CSPI02G10420Silver-seed gourdcarcpiB0259
CSPI02G10420Silver-seed gourdcarcpiB0265
CSPI02G10420Silver-seed gourdcarcpiB0783
CSPI02G10420Silver-seed gourdcarcpiB0812
CSPI02G10420Silver-seed gourdcarcpiB0995
CSPI02G10420Silver-seed gourdcarcpiB1112
CSPI02G10420Cucumber (Chinese Long) v3cpicucB080
CSPI02G10420Cucumber (Chinese Long) v3cpicucB088
CSPI02G10420Watermelon (97103) v2cpiwmbB133
CSPI02G10420Watermelon (97103) v2cpiwmbB149
CSPI02G10420Watermelon (97103) v2cpiwmbB157