CSPI02G10030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G10030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 10084092 .. 10084346 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCACGTCCTCGACGTCATGACCAATGTATTGGTGAAGGTTTGCCCAACGCCACATTGGAAGTCCCTCTTGGCTGACGCAGAGAGGGACGTTGAAAGTCCCTATTACCGGCGTGTTGTGTCCATCAAATTGCCTGCGTCGGGAGTAAGGCATTCTCGATGTCTTTTCGTTTGCACGTCGAGAGTGCCTCACCAACGTACTACTCACGACTTCCTTTTCGACGGCACCGTGTACCTCGAGATCCTTTCCTGA

mRNA sequence

ATGAGGCACGTCCTCGACGTCATGACCAATGTATTGGTGAAGGTTTGCCCAACGCCACATTGGAAGTCCCTCTTGGCTGACGCAGAGAGGGACGTTGAAAGTCCCTATTACCGGCGTGTTGTGTCCATCAAATTGCCTGCGTCGGGAGTAAGGCATTCTCGATGTCTTTTCGTTTGCACGTCGAGAGTGCCTCACCAACGTACTACTCACGACTTCCTTTTCGACGGCACCGTGTACCTCGAGATCCTTTCCTGA

Coding sequence (CDS)

ATGAGGCACGTCCTCGACGTCATGACCAATGTATTGGTGAAGGTTTGCCCAACGCCACATTGGAAGTCCCTCTTGGCTGACGCAGAGAGGGACGTTGAAAGTCCCTATTACCGGCGTGTTGTGTCCATCAAATTGCCTGCGTCGGGAGTAAGGCATTCTCGATGTCTTTTCGTTTGCACGTCGAGAGTGCCTCACCAACGTACTACTCACGACTTCCTTTTCGACGGCACCGTGTACCTCGAGATCCTTTCCTGA

Homology

[Close]

BLAST of CSPI02G10030 vs. TrEMBL
Match: A0A0A0LI52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171865 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MRHVLDVMTNVLVKVCPTPHWKSLLADAERDVESPYYRRVVSIKLPASGVRHSRCLFVCT 60
          MRHVLDVMTNVL KVCPTPHWKS LADAERDVESPYYRRVVSIKLPASGVRHSRC+FVCT
Sbjct: 1  MRHVLDVMTNVLEKVCPTPHWKSFLADAERDVESPYYRRVVSIKLPASGVRHSRCVFVCT 60

Query: 61 SRVPHQRTTHDFLFDGTVYLEILS 85
          SRVPHQRTTHDFLFDGT+YLEILS
Sbjct: 61 SRVPHQRTTHDFLFDGTMYLEILS 84

[Close]

BLAST of CSPI02G10030 vs. TrEMBL
Match: B0F826_CUCSA (Putative uncharacterized protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-37
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1  MRHVLDVMTNVLVKVCPTPHWKSLLADAERDVESPYYRRVVSIKLPASGVRHSRCLFVCT 60
          MRHVLDVMTNVL KVCPTPHWKS LADAERDVESPYYRRVVSIKLPASGVRHSRC+FVCT
Sbjct: 1  MRHVLDVMTNVLEKVCPTPHWKSFLADAERDVESPYYRRVVSIKLPASGVRHSRCVFVCT 60

Query: 61 SRVPHQRTTHDFLFDGTV 79
          SRVPHQRTTHDFLFDGT+
Sbjct: 61 SRVPHQRTTHDFLFDGTI 78

[Close]

BLAST of CSPI02G10030 vs. NCBI nr
Match: gi|700206446|gb|KGN61565.1| (hypothetical protein Csa_2G171865 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MRHVLDVMTNVLVKVCPTPHWKSLLADAERDVESPYYRRVVSIKLPASGVRHSRCLFVCT 60
          MRHVLDVMTNVL KVCPTPHWKS LADAERDVESPYYRRVVSIKLPASGVRHSRC+FVCT
Sbjct: 1  MRHVLDVMTNVLEKVCPTPHWKSFLADAERDVESPYYRRVVSIKLPASGVRHSRCVFVCT 60

Query: 61 SRVPHQRTTHDFLFDGTVYLEILS 85
          SRVPHQRTTHDFLFDGT+YLEILS
Sbjct: 61 SRVPHQRTTHDFLFDGTMYLEILS 84

[Close]

BLAST of CSPI02G10030 vs. NCBI nr
Match: gi|164449277|gb|ABY56105.1| (hypothetical protein [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-37
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1  MRHVLDVMTNVLVKVCPTPHWKSLLADAERDVESPYYRRVVSIKLPASGVRHSRCLFVCT 60
          MRHVLDVMTNVL KVCPTPHWKS LADAERDVESPYYRRVVSIKLPASGVRHSRC+FVCT
Sbjct: 1  MRHVLDVMTNVLEKVCPTPHWKSFLADAERDVESPYYRRVVSIKLPASGVRHSRCVFVCT 60

Query: 61 SRVPHQRTTHDFLFDGTV 79
          SRVPHQRTTHDFLFDGT+
Sbjct: 61 SRVPHQRTTHDFLFDGTI 78

The following BLAST results are available for this feature:

BLAST of CSPI02G10030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G10030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI52_CUCSA	1.6e-40	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171865 PE=4 SV=1	[more]
B0F826_CUCSA	2.2e-37	94.87	Putative uncharacterized protein OS=Cucumis sativus PE=4 SV=1	[more]

BLAST of CSPI02G10030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G10030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206446\|gb\|KGN61565.1\|	2.3e-40	95.24	hypothetical protein Csa_2G171865 [Cucumis sativus]	[more]
gi\|164449277\|gb\|ABY56105.1\|	3.1e-37	94.87	hypothetical protein [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G10030.1	CSPI02G10030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G10030	CsaV3_2G012460	Cucumber (Chinese Long) v3	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G10030	Silver-seed gourd	carcpiB0259
CSPI02G10030	Silver-seed gourd	carcpiB0265
CSPI02G10030	Silver-seed gourd	carcpiB0783
CSPI02G10030	Silver-seed gourd	carcpiB0812
CSPI02G10030	Silver-seed gourd	carcpiB0995
CSPI02G10030	Silver-seed gourd	carcpiB1112
CSPI02G10030	Cucumber (Chinese Long) v3	cpicucB088
CSPI02G10030	Cucumber (Chinese Long) v3	cpicucB097
CSPI02G10030	Watermelon (97103) v2	cpiwmbB133
CSPI02G10030	Watermelon (97103) v2	cpiwmbB149
CSPI02G10030	Watermelon (97103) v2	cpiwmbB157
CSPI02G10030	Wax gourd	cpiwgoB122
CSPI02G10030	Wax gourd	cpiwgoB142
CSPI02G10030	Wax gourd	cpiwgoB147
CSPI02G10030	Wild cucumber (PI 183967)	cpicpiB057
CSPI02G10030	Wild cucumber (PI 183967)	cpicpiB070
CSPI02G10030	Cucumber (Gy14) v1	cgycpiB378
CSPI02G10030	Cucumber (Gy14) v1	cgycpiB565
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB240
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB354
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB515
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB591
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB825
CSPI02G10030	Cucurbita maxima (Rimu)	cmacpiB899
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB503
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB228
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB346
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB580
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB812
CSPI02G10030	Cucurbita moschata (Rifu)	cmocpiB879
CSPI02G10030	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G10030	Cucumber (Chinese Long) v2	cpicuB069
CSPI02G10030	Cucumber (Chinese Long) v2	cpicuB079
CSPI02G10030	Melon (DHL92) v3.5.1	cpimeB126
CSPI02G10030	Melon (DHL92) v3.5.1	cpimeB141
CSPI02G10030	Melon (DHL92) v3.5.1	cpimeB144
CSPI02G10030	Watermelon (Charleston Gray)	cpiwcgB141
CSPI02G10030	Watermelon (Charleston Gray)	cpiwcgB156
CSPI02G10030	Watermelon (Charleston Gray)	cpiwcgB163
CSPI02G10030	Watermelon (97103) v1	cpiwmB125
CSPI02G10030	Watermelon (97103) v1	cpiwmB121
CSPI02G10030	Watermelon (97103) v1	cpiwmB174
CSPI02G10030	Cucurbita pepo (Zucchini)	cpecpiB126
CSPI02G10030	Cucurbita pepo (Zucchini)	cpecpiB306
CSPI02G10030	Cucurbita pepo (Zucchini)	cpecpiB598
CSPI02G10030	Cucurbita pepo (Zucchini)	cpecpiB716
CSPI02G10030	Cucurbita pepo (Zucchini)	cpecpiB851
CSPI02G10030	Bottle gourd (USVL1VR-Ls)	cpilsiB085
CSPI02G10030	Bottle gourd (USVL1VR-Ls)	cpilsiB125
CSPI02G10030	Bottle gourd (USVL1VR-Ls)	cpilsiB127
CSPI02G10030	Melon (DHL92) v3.6.1	cpimedB122
CSPI02G10030	Melon (DHL92) v3.6.1	cpimedB134
CSPI02G10030	Melon (DHL92) v3.6.1	cpimedB137
CSPI02G10030	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G10030	Cucumber (Gy14) v2	cgybcpiB100