CSPI02G09880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G09880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 9970458 .. 9970923 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGGATTACCATGACACCAATTTTGCTAATTTCAATGCTTTAGGATTTAATGATGGTGCAAGTTGGGCATTTGACTCATTATTTGTCCCAAAAGTTTCTTGCAAGGCTTTAACCCTTAAACCCACAATTTCTCCCTCGCGACACCTACTCCACGCTGCGACCTCTTGAACGCGACTCCTTCTGCACGCCAGTGAACAGCTCACAACAAACAGACAGCGGCGCACCATCGGAGCGGGTTCTGTTCTGTAAAAAGTCCTCTTCTCTCCCGTTACCAGCTACTGCAGACCTCCCCGCCGCACGCTTCCCTCTCAGCTGCCACAGTCTCTGCCACCCACGAACTCACCGCCGCTCCCTCCATCAGGCACTTATTTCGGTCGTGTTGTTAGCTTACTCCGAAACAGAAACTGTGGTTCAGCTCCTAACGCCCGGCGTTCGTGGTCGCGCCGCTGCTCATTCTTAG

mRNA sequence

ATGAAATTGGATTACCATGACACCAATTTTGCTAATTTCAATGCTTTAGGATTTAATGATGGTGCAATGAACAGCTCACAACAAACAGACAGCGGCGCACCATCGGAGCGGGTTCTGTTCTGTAAAAAGTCCTCTTCTCTCCCGTTACCAGCTACTGCAGACCTCCCCGCCGCACGCTTCCCTCTCAGCTGCCACAGTCTCTGCCACCCACGAACTCACCGCCGCTCCCTCCATCAGGCACTTATTTCGGTCGTGTTGTTAGCTTACTCCGAAACAGAAACTGTGGTTCAGCTCCTAACGCCCGGCGTTCGTGGTCGCGCCGCTGCTCATTCTTAG

Coding sequence (CDS)

ATGAAATTGGATTACCATGACACCAATTTTGCTAATTTCAATGCTTTAGGATTTAATGATGGTGCAATGAACAGCTCACAACAAACAGACAGCGGCGCACCATCGGAGCGGGTTCTGTTCTGTAAAAAGTCCTCTTCTCTCCCGTTACCAGCTACTGCAGACCTCCCCGCCGCACGCTTCCCTCTCAGCTGCCACAGTCTCTGCCACCCACGAACTCACCGCCGCTCCCTCCATCAGGCACTTATTTCGGTCGTGTTGTTAGCTTACTCCGAAACAGAAACTGTGGTTCAGCTCCTAACGCCCGGCGTTCGTGGTCGCGCCGCTGCTCATTCTTAG
Homology
[Close]
BLAST of CSPI02G09880 vs. TrEMBL
Match: A0A0A0LI41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169740 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-54
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   MKLDYHDTNFANFNALGFNDGAMNSSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF 60
           MKLDYHDTNFANFNALGFNDGAM SSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF
Sbjct: 1   MKLDYHDTNFANFNALGFNDGAMTSSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF 60

Query: 61  PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS 112
           PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS
Sbjct: 61  PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS 111

[Close]
BLAST of CSPI02G09880 vs. NCBI nr
Match: gi|700206431|gb|KGN61550.1| (hypothetical protein Csa_2G169740 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-54
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   MKLDYHDTNFANFNALGFNDGAMNSSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF 60
           MKLDYHDTNFANFNALGFNDGAM SSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF
Sbjct: 1   MKLDYHDTNFANFNALGFNDGAMTSSQQTDSGAPSERVLFCKKSSSLPLPATADLPAARF 60

Query: 61  PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS 112
           PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS
Sbjct: 61  PLSCHSLCHPRTHRRSLHQALISVVLLAYSETETVVQLLTPGVRGRAAAHS 111

The following BLAST results are available for this feature:
BLAST of CSPI02G09880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G09880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI41_CUCSA1.2e-5499.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169740 PE=4 SV=1[more]
BLAST of CSPI02G09880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G09880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206431|gb|KGN61550.1|1.7e-5499.10hypothetical protein Csa_2G169740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G09880.1CSPI02G09880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G09880Csa2G169740Cucumber (Chinese Long) v2cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G09880Melon (DHL92) v3.6.1cpimedB122
CSPI02G09880Melon (DHL92) v3.6.1cpimedB134
CSPI02G09880Melon (DHL92) v3.6.1cpimedB137
CSPI02G09880Cucumber (Gy14) v2cgybcpiB056
CSPI02G09880Cucumber (Gy14) v2cgybcpiB100
CSPI02G09880Silver-seed gourdcarcpiB0259
CSPI02G09880Silver-seed gourdcarcpiB0265
CSPI02G09880Silver-seed gourdcarcpiB0812
CSPI02G09880Silver-seed gourdcarcpiB0995
CSPI02G09880Silver-seed gourdcarcpiB1112
CSPI02G09880Cucumber (Chinese Long) v3cpicucB080
CSPI02G09880Cucumber (Chinese Long) v3cpicucB088
CSPI02G09880Cucumber (Chinese Long) v3cpicucB097
CSPI02G09880Watermelon (97103) v2cpiwmbB133
CSPI02G09880Watermelon (97103) v2cpiwmbB149
CSPI02G09880Watermelon (97103) v2cpiwmbB157
CSPI02G09880Wax gourdcpiwgoB122
CSPI02G09880Wax gourdcpiwgoB127
CSPI02G09880Wax gourdcpiwgoB147
CSPI02G09880Wild cucumber (PI 183967)cpicpiB057
CSPI02G09880Wild cucumber (PI 183967)cpicpiB070
CSPI02G09880Cucumber (Gy14) v1cgycpiB378
CSPI02G09880Cucumber (Gy14) v1cgycpiB565
CSPI02G09880Cucurbita maxima (Rimu)cmacpiB240
CSPI02G09880Cucurbita maxima (Rimu)cmacpiB354
CSPI02G09880Cucurbita maxima (Rimu)cmacpiB591
CSPI02G09880Cucurbita maxima (Rimu)cmacpiB825
CSPI02G09880Cucurbita maxima (Rimu)cmacpiB899
CSPI02G09880Cucurbita moschata (Rifu)cmocpiB228
CSPI02G09880Cucurbita moschata (Rifu)cmocpiB346
CSPI02G09880Cucurbita moschata (Rifu)cmocpiB580
CSPI02G09880Cucurbita moschata (Rifu)cmocpiB812
CSPI02G09880Cucurbita moschata (Rifu)cmocpiB879
CSPI02G09880Cucumber (Chinese Long) v2cpicuB069
CSPI02G09880Cucumber (Chinese Long) v2cpicuB079
CSPI02G09880Melon (DHL92) v3.5.1cpimeB126
CSPI02G09880Melon (DHL92) v3.5.1cpimeB141
CSPI02G09880Melon (DHL92) v3.5.1cpimeB144
CSPI02G09880Watermelon (Charleston Gray)cpiwcgB141
CSPI02G09880Watermelon (Charleston Gray)cpiwcgB156
CSPI02G09880Watermelon (Charleston Gray)cpiwcgB163
CSPI02G09880Watermelon (97103) v1cpiwmB125
CSPI02G09880Watermelon (97103) v1cpiwmB121
CSPI02G09880Watermelon (97103) v1cpiwmB174
CSPI02G09880Cucurbita pepo (Zucchini)cpecpiB126
CSPI02G09880Cucurbita pepo (Zucchini)cpecpiB306
CSPI02G09880Cucurbita pepo (Zucchini)cpecpiB598
CSPI02G09880Cucurbita pepo (Zucchini)cpecpiB851
CSPI02G09880Bottle gourd (USVL1VR-Ls)cpilsiB085
CSPI02G09880Bottle gourd (USVL1VR-Ls)cpilsiB125
CSPI02G09880Bottle gourd (USVL1VR-Ls)cpilsiB127