CSPI02G08500 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G08500
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionGag-pol polyprotein
LocationChr2 : 8041839 .. 8042171 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG

mRNA sequence

ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG

Coding sequence (CDS)

ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG
Homology
[Close]
BLAST of CSPI02G08500 vs. TrEMBL
Match: W9R3W7_9ROSA (Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE I + N ++ D +N +F LGEK+   KLVRK LRSL  +F  KV  IEEA DI  
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  IRLDKLFGSLRTFELSFDDNT-SKKESSILFQGVSD 96
           I+LD+L GSLRTFE++ D+N   KKE SI FQ   D
Sbjct: 197 IKLDELMGSLRTFEMNLDENNEGKKEKSIAFQAEVD 232

[Close]
BLAST of CSPI02G08500 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 6.9e-15
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M E+E I E ++ +L+ +NA   LGE++++ KLVRK LRSL  +F+MKV  IEEA DI  
Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 171

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDD 97
           +R+D+L GSL+TFEL   D T KK  ++ F  VS+D
Sbjct: 172 MRVDELIGSLQTFELGLSDRTEKKSKNLAF--VSND 205

[Close]
BLAST of CSPI02G08500 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M E+E I + ++ +L+ +NA   LGE++++ KLVRK LRSL  +F+MKV  IEEA DI  
Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDD 97
           +R+D+L GSL+TFEL   D T KK  ++ F  VS+D
Sbjct: 199 LRVDELIGSLQTFELGLSDRTEKKSKNLAF--VSND 232

[Close]
BLAST of CSPI02G08500 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M E+E I + ++ +L+ +NA   LGE++++ KLVRK LRSL  +F+MKV  IEEA DI  
Sbjct: 139 MKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDD 97
           +R+D+L GSL+TFEL   D T KK  ++ F  VS+D
Sbjct: 199 MRVDELIGSLQTFELGLSDRTEKKSKNLAF--VSND 232

[Close]
BLAST of CSPI02G08500 vs. TrEMBL
Match: Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-14
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M E+E I + ++ +L+ +NA   LGE++++ KLVRK LRSL  +F+MKV  IEEA DI  
Sbjct: 140 MKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 199

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDD 97
           +R+D+L GSL+TFEL   D   KK  ++ F  VS+D
Sbjct: 200 MRVDELIGSLQTFELGLSDRNEKKSKNLAF--VSND 233

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           + EDE IVE NVRVLD +N SF L EKL+NTK VRK  RSL  +FNMKV TIEEANDI  
Sbjct: 144 LTEDETIVEFNVRVLDLANESFALSEKLTNTKQVRKVQRSLPPRFNMKVTTIEEANDILV 203

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKES 87
           IRLD+LF SLRTFELS D +   +ES
Sbjct: 204 IRLDELFDSLRTFELSLDLHLLIRES 229

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-19
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE I E  VRVL+ +N  +TLGEK+S++KLVRK LRSL S+FN+K+ TIEEAND++ 
Sbjct: 274 MEEDETIAEFIVRVLNIANELYTLGEKMSDSKLVRKVLRSLPSRFNIKITTIEEANDLSK 333

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAA 99
           ++LD+LFGSLRTFEL   D  S+++  +    V +  A
Sbjct: 334 MKLDELFGSLRTFELHLGDGESRRKIGLALTLVKEKLA 371

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: gi|659109377|ref|XP_008454684.1| (PREDICTED: uncharacterized protein LOC103495039 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE   E N RVL+ +N S  LGEK+  +K+VRK LRSL  +F++KV  IEEA DITT
Sbjct: 79  MIEDETASEYNERVLEIANDSLLLGEKIHESKIVRKVLRSLPRKFDIKVTAIEEAQDITT 138

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSD 96
           ++LD+LFGSL TFE++  D  SKK+  I F+ V D
Sbjct: 139 LKLDELFGSLLTFEMAMLDRESKKDKRIAFKSVYD 173

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: gi|659087166|ref|XP_008444307.1| (PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE + + N RVL+ +N S  L EK+ ++K+VRK L+SL   F +KVI IEEA+DITT
Sbjct: 86  MTEDEPVSDYNKRVLEIANESLMLDEKIPDSKIVRKVLQSLPRIFYLKVIAIEEAHDITT 145

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILF-------QGVSDDAANLS 102
           ++LD+LFGSL TFE++  D  SKK   I F       + VSD  AN++
Sbjct: 146 LKLDELFGSLLTFEMATTDRESKKGKGIAFKFTHVSEEAVSDTKANMN 193

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: gi|703072544|ref|XP_010089312.1| (Receptor-like protein 12 [Morus notabilis])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE I + N ++ D +N +F LGEK+   KLVRK LRSL  +F  KV  IEEA DI  
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  IRLDKLFGSLRTFELSFDDNT-SKKESSILFQGVSD 96
           I+LD+L GSLRTFE++ D+N   KKE SI FQ   D
Sbjct: 197 IKLDELMGSLRTFEMNLDENNEGKKEKSIAFQAEVD 232

The following BLAST results are available for this feature:
BLAST of CSPI02G08500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G08500 vs. TrEMBL
Match NameE-valueIdentityDescription
W9R3W7_9ROSA2.1e-1654.17Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1[more]
O65147_SOYBN6.9e-1550.00Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2[more]
V9H042_SOYBN1.2e-1448.96Gag-protease polyprotein OS=Glycine max PE=2 SV=1[more]
Q84VH6_SOYBN2.0e-1448.96Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI0_SOYBN5.8e-1447.92Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
BLAST of CSPI02G08500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G08500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072224|ref|XP_008464095.1|1.3e-1967.44PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo][more]
gi|659129626|ref|XP_008464761.1|8.6e-1954.08PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo][more]
gi|659109377|ref|XP_008454684.1|2.1e-1754.74PREDICTED: uncharacterized protein LOC103495039 [Cucumis melo][more]
gi|659087166|ref|XP_008444307.1|2.3e-1649.07PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo][more]
gi|703072544|ref|XP_010089312.1|3.1e-1654.17Receptor-like protein 12 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G08500.1CSPI02G08500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..75
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G08500Cucumber (Chinese Long) v2cpicuB065
CSPI02G08500Watermelon (Charleston Gray)cpiwcgB157
CSPI02G08500Bottle gourd (USVL1VR-Ls)cpilsiB086
CSPI02G08500Cucumber (Gy14) v2cgybcpiB056
CSPI02G08500Cucumber (Chinese Long) v3cpicucB080
CSPI02G08500Wax gourdcpiwgoB123
CSPI02G08500Cucumber (Gy14) v1cgycpiB403