CSPI02G04920 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G04920
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 3507043 .. 3508509 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAGGAATAAAGGTGGTGGAGAAGTTCTATAGAGTGTAGGATCCACGAAGACTTGAGATATTGGAGTCAACCGATCAAAATTAAAAAAACAAGCCGCCAAGGCATGGTTGGAAATTAAGGCAAAAGAGAATGGCTCATCATTTCATTTTTGGGTCAAACCACTATGGCTTTTCATAGCTTAAATCTCAACCCATCAAATTAACACAATGACATACTAAGAGGTAACCAAAAATATTATGGCTCATTTATTTCTTAATTATCTAAATGTAGATTCACTTTTCATATCAAAATTGTTTTTGATATTATGAGTAAGAGGTAACAAAATTATACTTTTTCTCTCTGTTTTGTTCATTATCCAAATTTGTAGTATAGCCCAAGTTGATGAGGCTATACAAAACATAAAATAACATAAGAAACTCAATTACTTTTTAATTCTCTCAGTAAAACTTTCCACATGTCTCTGCACAAACCTGTCTTCAACAGTTCTATGTGAATCATCTCTCTCTCTCTCTCTCTCTCTCTCTAATCCATTTCCACCAGCTATGGAAGGAGGAAGAAAAAGAAGAAAGTTACAGAATAATGAGAAAGAAGAAGAGGAAGAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAATGAAATATTCAAAAGAATTAACCGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATAATTACAATAATAAGTCCAACATAACTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAGAAAAACAGAGCAATGAACAGAAACAAGAACAAGAACAAGATGAAGATGAAGATAAGGTAAGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGATTTTTTTTTTTTTTTTTTGTTGCTTTTTTGTGTGTTATTAACACTGTTTTATAATGGGTCGTTGTTTTTGGTTTACCTTTATTCTAATTTGGTTGTTATCTTCTTAGCATTTTGGTTTATGCTTTTGAGCTTGCTCTGTTTCTTGTGTTCTGTTTCCATTGAGAATTTGAAGAACCTTTCTTTGGTACTCTATGGCAAATTTTAATTAATGTGGTTTCAAGGGAAAAGTTGTTGAAGACAAAGGTACTCTTTGTGAGAATGAAGCAACGTTTTTTTAGGACCGAAAGTGAGGTTAATCAATCTCAAGTTCATATGCTCGAGTTAGTATGTTTGTGCTTTAGGATTTGACTCATCATAATTGGAAGAAGTAGAAGAAGTAGATTAAGAAAGTAAGATTCAACTACTAAAGCTCAGCAGTGTTTAAAATCCAAGTTGAGTCGTTTACACCAACTCCAACCATCCCTTGATTTTAGTTCAATCCTATCTTTGTTATCACATTTTCTTGTATGTAAC

mRNA sequence

ATGGAAGGAGGAAGAAAAAGAAGAAAGTTACAGAATAATGAGAAAGAAGAAGAGGAAGAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAATGAAATATTCAAAAGAATTAACCGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATAATTACAATAATAAGTCCAACATAACTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAGAAAAACAGAGCAATGAACAGAAACAAGAACAAGAACAAGATGAAGATGAAGATAAGGTAAGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAGGAGGAAGAAAAAGAAGAAAGTTACAGAATAATGAGAAAGAAGAAGAGGAAGAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAATGAAATATTCAAAAGAATTAACCGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATAATTACAATAATAAGTCCAACATAACTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAGAAAAACAGAGCAATGAACAGAAACAAGAACAAGAACAAGATGAAGATGAAGATAAGGTAAGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Homology

[Close]

BLAST of CSPI02G04920 vs. TrEMBL
Match: A0A0A0LJ23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034770 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.4e-38
Identity = 102/135 (75.56%), Postives = 109/135 (80.74%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEEEEEEEKKMELFYALIQNTKAMRDRMKYSKELTEE 60
           ME GRKRRKLQ            EEEEEEE++KMELFYALIQNTKAMRD MKYSKELTEE
Sbjct: 1   MESGRKRRKLQ------------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEE 60

Query: 61  EKSKGVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQKQEQEQDEDED 120
           EKSKGVWNPKFQPEDF EEDGYNYNNKSNI PLQLSAASSST KQ NE+KQ++E  +   
Sbjct: 61  EKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE--DKHY 120

Query: 121 KVRKGKNGLDLNLSL 136
           KV + K GLDLNLSL
Sbjct: 121 KVVEVKKGLDLNLSL 121

[Close]

BLAST of CSPI02G04920 vs. TrEMBL
Match: A0A061F4Z3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026807 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-10
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEE-EEEEEKKMELFYALIQNTKAMRDRMKY----SK 60
           ME GRK+RK+ N E+EE++E EEEE+ EEEEE+K+E F+ALI++T+ MRDR++     SK
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  ELTEEEKSK-----GVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQK 120
           E  E +K +      VWNPKFQPEDF+E+            P  L A + +    + EQ+
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMEDS----------KPKNLLAVNEAGPSSNREQE 120

Query: 121 QEQEQDEDEDKVRKGKNGLDLNLSL 136
           Q Q+  E  +       GLDL LSL
Sbjct: 121 QGQDTKEGGE-----DGGLDLKLSL 130

[Close]

BLAST of CSPI02G04920 vs. TrEMBL
Match: V7BGK0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G203700g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEEEEEEEKKMELFYALIQNTKAMRDRMKYSKELTEE 60
           MEGGR++RK+        E  EE EEEE EE++ME F+ALI++TK  RDR+   K   EE
Sbjct: 6   MEGGRRKRKM--------EREEESEEEESEEEQMEKFFALIKSTKDARDRLSKEK---EE 65

Query: 61  EKSKGVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQKQEQEQDEDED 120
           EK+KGVW P F+PEDF+++            P     +   TEK+ +     Q   + ++
Sbjct: 66  EKAKGVWKPTFEPEDFMDDQELAKIKYKEDAP---GPSGKVTEKEPSPDATTQPHPQPQN 125

Query: 121 -KVRKGKNGLDLNLSL 136
               K  + LDL LSL
Sbjct: 126 GNNNKPSHDLDLTLSL 127

[Close]

BLAST of CSPI02G04920 vs. NCBI nr
Match: gi|700205905|gb|KGN61024.1| (hypothetical protein Csa_2G034770 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 7.8e-38
Identity = 102/135 (75.56%), Postives = 109/135 (80.74%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEEEEEEEKKMELFYALIQNTKAMRDRMKYSKELTEE 60
           ME GRKRRKLQ            EEEEEEE++KMELFYALIQNTKAMRD MKYSKELTEE
Sbjct: 1   MESGRKRRKLQ------------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEE 60

Query: 61  EKSKGVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQKQEQEQDEDED 120
           EKSKGVWNPKFQPEDF EEDGYNYNNKSNI PLQLSAASSST KQ NE+KQ++E  +   
Sbjct: 61  EKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE--DKHY 120

Query: 121 KVRKGKNGLDLNLSL 136
           KV + K GLDLNLSL
Sbjct: 121 KVVEVKKGLDLNLSL 121

[Close]

BLAST of CSPI02G04920 vs. NCBI nr
Match: gi|590644944|ref|XP_007031220.1| (Uncharacterized protein TCM_026807 [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEE-EEEEEKKMELFYALIQNTKAMRDRMKY----SK 60
           ME GRK+RK+ N E+EE++E EEEE+ EEEEE+K+E F+ALI++T+ MRDR++     SK
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  ELTEEEKSK-----GVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQK 120
           E  E +K +      VWNPKFQPEDF+E+            P  L A + +    + EQ+
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMEDS----------KPKNLLAVNEAGPSSNREQE 120

Query: 121 QEQEQDEDEDKVRKGKNGLDLNLSL 136
           Q Q+  E  +       GLDL LSL
Sbjct: 121 QGQDTKEGGE-----DGGLDLKLSL 130

[Close]

BLAST of CSPI02G04920 vs. NCBI nr
Match: gi|593688781|ref|XP_007145025.1| (hypothetical protein PHAVU_007G203700g [Phaseolus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-06
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 1


Query: 1   MEGGRKRRKLQNNEKEEEEENEEEEEEEEEEKKMELFYALIQNTKAMRDRMKYSKELTEE 60
           MEGGR++RK+        E  EE EEEE EE++ME F+ALI++TK  RDR+   K   EE
Sbjct: 6   MEGGRRKRKM--------EREEESEEEESEEEQMEKFFALIKSTKDARDRLSKEK---EE 65

Query: 61  EKSKGVWNPKFQPEDFIEEDGYNYNNKSNITPLQLSAASSSTEKQSNEQKQEQEQDEDED 120
           EK+KGVW P F+PEDF+++            P     +   TEK+ +     Q   + ++
Sbjct: 66  EKAKGVWKPTFEPEDFMDDQELAKIKYKEDAP---GPSGKVTEKEPSPDATTQPHPQPQN 125

Query: 121 -KVRKGKNGLDLNLSL 136
               K  + LDL LSL
Sbjct: 126 GNNNKPSHDLDLTLSL 127

The following BLAST results are available for this feature:

BLAST of CSPI02G04920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G04920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ23_CUCSA	5.4e-38	75.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034770 PE=4 SV=1	[more]
A0A061F4Z3_THECC	8.2e-10	44.14	Uncharacterized protein OS=Theobroma cacao GN=TCM_026807 PE=4 SV=1	[more]
V7BGK0_PHAVU	4.2e-06	39.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G203700g PE=4 SV=1	[more]

BLAST of CSPI02G04920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G04920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205905\|gb\|KGN61024.1\|	7.8e-38	75.56	hypothetical protein Csa_2G034770 [Cucumis sativus]	[more]
gi\|590644944\|ref\|XP_007031220.1\|	1.2e-09	44.14	Uncharacterized protein TCM_026807 [Theobroma cacao]	[more]
gi\|593688781\|ref\|XP_007145025.1\|	6.0e-06	39.71	hypothetical protein PHAVU_007G203700g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0010112	regulation of systemic acquired resistance

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04920.1	CSPI02G04920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..36 scor
None	No IPR available	PANTHER	PTHR33669	FAMILY NOT NAMED	coord: 10..135 score: 8.8
None	No IPR available	PANTHER	PTHR33669:SF2	SUBFAMILY NOT NAMED	coord: 10..135 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G04920	MELO3C004160	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G04920	Lsi11G006560	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G04920	MELO3C004160.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G04920	Bhi06G001359	Wax gourd	cpiwgoB129
CSPI02G04920	Cucsa.090410	Cucumber (Gy14) v1	cgycpiB097
CSPI02G04920	CmaCh05G010600	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G04920	CmoCh05G010700	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G04920	Cp4.1LG11g08550	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G04920	CsGy2G005060	Cucumber (Gy14) v2	cgybcpiB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G04920	Cucurbita moschata (Rifu)	cmocpiB349
CSPI02G04920	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G04920	Melon (DHL92) v3.5.1	cpimeB113
CSPI02G04920	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G04920	Watermelon (Charleston Gray)	cpiwcgB161
CSPI02G04920	Watermelon (97103) v1	cpiwmB120
CSPI02G04920	Watermelon (97103) v1	cpiwmB149
CSPI02G04920	Melon (DHL92) v3.6.1	cpimedB109
CSPI02G04920	Silver-seed gourd	carcpiB0596
CSPI02G04920	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G04920	Watermelon (97103) v2	cpiwmbB120
CSPI02G04920	Watermelon (97103) v2	cpiwmbB154