CSPI02G04420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G04420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	Chr2 : 3172654 .. 3176752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCCTCAAATTAGCACTGAGCTCAGCCTCAGTCTTCTTCAATTTCATCGAATTTTTCATCAATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGAAGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGTAGGTTTTTCTCTTAATTTGCCTAAAATTGCTTCTAGTGTTACTATCTTTGGCTTGAATTTGTTTAAATTTTTTTGTTTCTAAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATGTAGGTTTCTAAACTTTGCGGCGATGTTCGTAATTTAATTTGAAAATTGAAATTGGTTTTGTTAGCTTAACTATCAACCAGGAGTCTGTTTTAGTTCTGAATGATAACGAAATGAAAACTCTTAAATTCGAATAGGGATATATTGCTTTGGAGTTCACTGGAAAGGAAATTGAAATTATTACTGATTAGGAGTTAGGATTAATGATTTATTCCTAATCCATAGCAGTGCATTAGTTAATTAATATAGATTTCGTTATCGTTGTTATCAGATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGGTACCAATCTTCTTCAAATTTTCTTTTCTACTACATTTATGTCTTATGATAGTAACAAATGCAGAGAAGAAGCAGAAATGGGTTTGTCAAGTCATTGAAAAATAATTTTTTTTGCATCTGCTTGAGTTAGCATTGGTACAAATAAAATTATGTTAATTTGGATGAGTTTGAATAGTTGAAGTAGGAATCTCTTTTTAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAAGCTAAAATTTGATTGTGGCAAAATATCTTTGAGATGATAAAAGCACGGATGAAATATTTGCATGAGATTGATGGAGTGAGTTTAGGATGAATTTTGCTTAAAATAATTGGAAGTTACGGGTTTCGAAACTCTCACCTTTAGGATGAAAGGTCATGTCAATTACCGCTGTCTCACGAGTTTGAGATGAATTTTGAGGGTGGTATTTTAAGTGAAACACATTTTTGTTTTCAAGAAACACTAATTAATTTATAGCAAACTCATCATAATCATATTTGGAAGTTTTACAATGAATGCAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAAGTACGGAATTTCTGCCTATTTTGAATTATCTTTGATTTTCCTTTTAAGTCATTTGGTCACTACCTTTGTTTTTTCTGAAGTATCTATTATTCTGTTTAAATTATTTTCAATGATGTTGCCCCGACGTAATTCGCTTGTTGACAAACGATCTCTAAGTTACTTTTTAGATGCACCATTTTGCTAAGTGTGTTGTTTAATTTTCTAGATTATGAGCTGACAGAGAGTTGTTTTTACTTCATAGCTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAATGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGGTTAGGTTAAAACACTTGCTAACTCTTTACTGTTTTTTAGTCTCTGAAAAATCATTGAATAATAACCCGAAGTAATATTCTTGTCCTTTTACCATGCCCACAACTATGAGATTCAGGCTTTTCTTTGATAGCTACATAACTAGGATCAAACATTCTGTTATTCCAAAGTAGAACATATCATCTTGCAATAGAATTGAAATCATACCCCAATTATTAGATTGTGCTCATGATCTAATGTCAATGGTTTTCTGAGCAGTTTCGCCCAACCAAAGGTTGGTTCCGAAAGGCAACAAGGAAGGATTCTAAGTTATTAAGTTTGATCATTTGAACTTTTAAATTTAAGCTTCTAAACACTACTTCTACCTTCGAGTTTGGTTGCATACCCGTATTTTTAAAAACAAAGTCAAGTTTTAAAAATTAAAAATAACAATAAAACTTTGTTTTTGTTTTTAAAATTTGACTAAGAATTCAATTGTATATTTAAGAAAAACGAAAAGTATAGAAAGAAAAATTATAAGTGAACAAGTATAATATATATATTTTTATGAGAAACGATTTCATTCAATAAATGAAATATCCAAGAGTATATAAAAGACTCTTTCGAAGAGCGTACAGGTAAGATCCCTTTGAAGAGTATACAAATGATGCTAATTCCAATTTTTTATTAAAGAAGAAAACCCAGGGCTCTTGATCATCTGTATATCTTTACACCATAAGAAGGCATTTGTGATCGCTAACTCTAAAACCCCAATCTCCTTGAAAAATTTGTCTGTGCACTGAAAAATTCTACCATCTCTTTCTCCCCAAACCTTCCACAAAATAGCTGAGTCTGATCTCCTCAGTATACTCATGATGTGTCTTCCATCCTCCGTAAAGTTTGTTCTACTCAAGATTTGTGATAAAGTATTTTGTGATGAGGCTGTTCCAATTGAGTCGCAGAAATGCTTGACAGCTTGGGTCCAAAGTACTTTCCTAAACAATGGCAGATATTTCTTTAAGGAGAAGAAGCATTTTATCCTCAAACTTTGCCTCTCTTAAGCCAACCCAGGTGCTTATCTTCACTGTAAAGTATCCAATAATTCTGTTTTTGGGATCATAACCTAGCATGTTGACATATCCAACTCACTCAATGAAGTTAAATATTAAAATAGGTGTCTTCTTTTCTACAACCTCTCCCGCATGCTCGAAACAAGCATACATTTCAAAAATAGAAAACTGAAAATGAAAGAATTATAAAAATTGGGGGAAAATTTTCAACTTAGGAAAATGAAGTTTGAGCTTAAAAGTTATCTCCAAACATCTGAACTCCTGATTTTATACCCTTTCAGAGTAATAACAACTACACTAGTTGAAGTTTATCTCCTTAACTACCCTAGTTACAATATCTAATAAAACAAAAGGTTTATTTTTAGGACTAGTTTGATACCCATTAGCTTTTAGTTTAAATAGCATACTCCAATAAACTCAATCAAGAAAACACACTTGTCAATCCTTATGATTTTTATGGATGTACCAAAACTGTGTTTCATGTGGAGATAAGATGACGCAAGCATAATACTTGGTTCCAGCATAAAAATCATTTGCAATATTTCTTCTCTAGAACGGCTGGAAAGTGATTTTCTGGGATTGTAATTTCCTTTTCGCAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGGACAGAGGTATGAGTCTACAATAAATAAAGTTCAAAGAAATCCACGTCTTTTGTGCAACCAATTTAATTAGTTCAAGTTTAAATGGTAAATTTGGTTCTATCATGGTTAGAATTTAGTCCAAATGATTTATCATAAAATCCTCATAAATAGTTCTTAAGGACTAAATTATAGGTTTTAAAAACCACAAAGACTGAACTCTAACTTTCTTCAAACAATGCAGACAAGAGTTATAATGGAAGTTCGATTAATGGGCAATGTCTCTCCTCTTTTCAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAGTAAAATTCTAAGCTATATTCTACCGTTCCTTTTCCTTCTTGTGTACAATCTACTTTTTCAGATCGAGATTCAGATTCTAATGAATTTTTGGGGGTTACTGAGATTGTTGACCAAAAAAATTCTTGGCTTGAAGCTTCTATTAGTAATATATTTACTTCAAGTTAGGTCAAAAGAAGAAAGAAAGAATGTTGGAAATATGTTAGTGTGATTTGAATGTAACGAGAG

mRNA sequence

ATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGAAGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAACTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAATGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGGACAGAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAG

Coding sequence (CDS)

ATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGAAGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAACTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAATGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGGACAGAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAG

Homology

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BLAST of CSPI02G04420 vs. TrEMBL
Match: A0A0A0LGH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032740 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 1.8e-149
Identity = 266/267 (99.63%), Postives = 266/267 (99.63%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL
Sbjct: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240

Query: 241 STYGQRSDDYMAALAKVHCLCRNWSFS 268
           STY QRSDDYMAALAKVHCLCRNWSFS
Sbjct: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267

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BLAST of CSPI02G04420 vs. TrEMBL
Match: A0A067JTV5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23268 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.9e-107
Identity = 205/267 (76.78%), Postives = 221/267 (82.77%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MA S +LK +I +S     S    SF  S KT       S++P  I     P   LSRR+
Sbjct: 1   MALSQNLKPTILISSISCNSSPNTSFPLSLKTQTDLSFFSTIPSSIHNLQRPLPILSRRV 60

Query: 61  FVPSVSGIWDALTGG--NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYL 120
           F+PSVSGIWDALTGG  NNPR AV  IRRGM LFR+GDVLGSLAEFDKAIELD RQKAYL
Sbjct: 61  FLPSVSGIWDALTGGGGNNPRQAVLKIRRGMSLFREGDVLGSLAEFDKAIELDSRQKAYL 120

Query: 121 WQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRD 180
           WQRGLSLYYLDRFEEGA+QFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVGRD
Sbjct: 121 WQRGLSLYYLDRFEEGAKQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRD 180

Query: 181 PRPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAA 240
           PRPVMREAYNMFKDGG PEKLV AFS+G ENEYFYASLYAGLYHE++KK+DAAK  IVAA
Sbjct: 181 PRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLDAAKFHIVAA 240

Query: 241 CQSTYGQRSDDYMAALAKVHCLCRNWS 266
           C+S YGQRSDDYMAAL+KVHCLCRNWS
Sbjct: 241 CKSLYGQRSDDYMAALSKVHCLCRNWS 267

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BLAST of CSPI02G04420 vs. TrEMBL
Match: A0A0S3SQI8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G175300 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.2e-105
Identity = 198/268 (73.88%), Postives = 221/268 (82.46%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           M+ S +LK SI VS SLH S + P   +S +   + H               PL+L+RRL
Sbjct: 5   MSISHNLKPSILVSPSLHHSSSFPILLSSKQPFSLTH---------------PLNLTRRL 64

Query: 61  FVPSVSGIWDALTGG-NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLW 120
           F+PSVSGIWDALTG  NN R+AV AIRRGM LFRQGDV GSL EFDKAI+LDPRQKAYLW
Sbjct: 65  FLPSVSGIWDALTGASNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAIQLDPRQKAYLW 124

Query: 121 QRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDP 180
           QRGLSLYYL+RFEEGAEQFR DVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVG DP
Sbjct: 125 QRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDP 184

Query: 181 RPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAAC 240
           RPVMREAYNMFKDGG PEKLVAAFS GR++EYFYASLYAGLY+E++ ++DAAK  IVAAC
Sbjct: 185 RPVMREAYNMFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNEIDAAKVHIVAAC 244

Query: 241 QSTYGQRSDDYMAALAKVHCLCRNWSFS 268
           QS+YGQRSDDYMAAL+KVHC CRNW F+
Sbjct: 245 QSSYGQRSDDYMAALSKVHCQCRNWVFN 257

[Close]

BLAST of CSPI02G04420 vs. TrEMBL
Match: B9I7A8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01390g PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.7e-105
Identity = 195/255 (76.47%), Postives = 215/255 (84.31%), Query Frame = 1


Query: 12  SVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRLFVPSVSGIWDA 71
           S S   H   T   F+  T T   F S +++P RI     P  + +RRLF+PSVSGIWDA
Sbjct: 16  SSSKHKHSLTTTLPFSPKTHTNSHFFS-TNIPSRIHNLQNPLPTFTRRLFLPSVSGIWDA 75

Query: 72  LTGGNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDR 131
           LTGGNN PR+AV AIRRGMLLFRQGDVLGSL EFDKAIELD RQKAYLWQRGLSLYY+DR
Sbjct: 76  LTGGNNNPREAVMAIRRGMLLFRQGDVLGSLVEFDKAIELDTRQKAYLWQRGLSLYYVDR 135

Query: 132 FEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPRPVMREAYNMF 191
           FEEGA+QFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVGRDPRPVMREAYNMF
Sbjct: 136 FEEGAQQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMF 195

Query: 192 KDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQSTYGQRSDDY 251
           KDGG PEK   AFS+G+ NEYFYASLYAGLYHEA+K+ +AAK  I+AAC+S YGQRSDDY
Sbjct: 196 KDGGDPEKFATAFSNGQGNEYFYASLYAGLYHEAQKEPEAAKVQIIAACRSPYGQRSDDY 255

Query: 252 MAALAKVHCLCRNWS 266
           MA+LAKVHCLCRNWS
Sbjct: 256 MASLAKVHCLCRNWS 269

[Close]

BLAST of CSPI02G04420 vs. TrEMBL
Match: A0A067H254_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021611mg PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.6e-104
Identity = 201/265 (75.85%), Postives = 221/265 (83.40%), Query Frame = 1


Query: 3   TSSSLKSSISVS-HSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRLF 62
           T   LK +I+   +S H+S        S +T    +S  S P    L +  P + +RRLF
Sbjct: 47  TQHVLKPTINPPLYSFHRSLLTSKAPLSVQTH--INSLFSTPRGHYLQNRAP-TFTRRLF 106

Query: 63  VPSVSGIWDALTGGNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 122
           +PSVSGIWDALTGGNN  R+AV AIRRGMLLFRQGDV+GS+AEFDKAIELDPRQKAYLWQ
Sbjct: 107 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ 166

Query: 123 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 182
           RGLSLYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR RFLEVGRDPR
Sbjct: 167 RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPR 226

Query: 183 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 242
           PVMREAYNMFK GG PEKLVAAFSSGRENEYFYASLYAGL++E++KK DAAK  I+AAC+
Sbjct: 227 PVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 286

Query: 243 STYGQRSDDYMAALAKVHCLCRNWS 266
           S YGQRSDDYMAALAKVH LCRNWS
Sbjct: 287 SPYGQRSDDYMAALAKVHSLCRNWS 308

[Close]

BLAST of CSPI02G04420 vs. TAIR10
Match: AT3G05625.1 (AT3G05625.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-99
Identity = 171/216 (79.17%), Postives = 194/216 (89.81%), Query Frame = 1


Query: 52  PPLSLSRRLFVPSVSGIWDALTGG--NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIE 111
           PP +LSRRLF+PSVS IWDA+TGG  +NPR+A+AA+RRGM LFRQGDV GS+AEFD+AI 
Sbjct: 38  PPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAII 97

Query: 112 LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR 171
           LDPRQKAYLWQRGLSLYY+DRFEEGAEQFR+DVAQNPNDTEESIWCF+CEA+L+GVD AR
Sbjct: 98  LDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVAR 157

Query: 172 RRFLEVGRDPRPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVD 231
            +FLEVGRD RPVMREAYN+FK+GG PEKLV  FSSG+ +EYFYASLYAGLY+EAE K +
Sbjct: 158 TQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSE 217

Query: 232 AAKQDIVAACQSTYGQRSDDYMAALAKVHCLCRNWS 266
            AK  + AAC S YGQRSDDYMA+LAKVHCLCRNWS
Sbjct: 218 NAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWS 253

[Close]

BLAST of CSPI02G04420 vs. NCBI nr
Match: gi|449454057|ref|XP_004144772.1| (PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus])

HSP 1 Score: 536.6 bits (1381), Expect = 2.5e-149
Identity = 266/267 (99.63%), Postives = 266/267 (99.63%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL
Sbjct: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240

Query: 241 STYGQRSDDYMAALAKVHCLCRNWSFS 268
           STY QRSDDYMAALAKVHCLCRNWSFS
Sbjct: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267

[Close]

BLAST of CSPI02G04420 vs. NCBI nr
Match: gi|659070214|ref|XP_008453971.1| (PREDICTED: uncharacterized protein LOC103494530 [Cucumis melo])

HSP 1 Score: 509.2 bits (1310), Expect = 4.3e-141
Identity = 253/267 (94.76%), Postives = 259/267 (97.00%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVL SLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLESLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGR NEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRVNEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYGQRSDDYMAALAKVHCLCRNWSFS 268
           STYGQRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CSPI02G04420 vs. NCBI nr
Match: gi|802755995|ref|XP_012088962.1| (PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas])

HSP 1 Score: 395.6 bits (1015), Expect = 7.0e-107
Identity = 205/267 (76.78%), Postives = 221/267 (82.77%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MA S +LK +I +S     S    SF  S KT       S++P  I     P   LSRR+
Sbjct: 1   MALSQNLKPTILISSISCNSSPNTSFPLSLKTQTDLSFFSTIPSSIHNLQRPLPILSRRV 60

Query: 61  FVPSVSGIWDALTGG--NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYL 120
           F+PSVSGIWDALTGG  NNPR AV  IRRGM LFR+GDVLGSLAEFDKAIELD RQKAYL
Sbjct: 61  FLPSVSGIWDALTGGGGNNPRQAVLKIRRGMSLFREGDVLGSLAEFDKAIELDSRQKAYL 120

Query: 121 WQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRD 180
           WQRGLSLYYLDRFEEGA+QFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVGRD
Sbjct: 121 WQRGLSLYYLDRFEEGAKQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRD 180

Query: 181 PRPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAA 240
           PRPVMREAYNMFKDGG PEKLV AFS+G ENEYFYASLYAGLYHE++KK+DAAK  IVAA
Sbjct: 181 PRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLDAAKFHIVAA 240

Query: 241 CQSTYGQRSDDYMAALAKVHCLCRNWS 266
           C+S YGQRSDDYMAAL+KVHCLCRNWS
Sbjct: 241 CKSLYGQRSDDYMAALSKVHCLCRNWS 267

[Close]

BLAST of CSPI02G04420 vs. NCBI nr
Match: gi|965608598|dbj|BAT95089.1| (hypothetical protein VIGAN_08175300 [Vigna angularis var. angularis])

HSP 1 Score: 391.0 bits (1003), Expect = 1.7e-105
Identity = 198/268 (73.88%), Postives = 221/268 (82.46%), Query Frame = 1


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           M+ S +LK SI VS SLH S + P   +S +   + H               PL+L+RRL
Sbjct: 5   MSISHNLKPSILVSPSLHHSSSFPILLSSKQPFSLTH---------------PLNLTRRL 64

Query: 61  FVPSVSGIWDALTGG-NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLW 120
           F+PSVSGIWDALTG  NN R+AV AIRRGM LFRQGDV GSL EFDKAI+LDPRQKAYLW
Sbjct: 65  FLPSVSGIWDALTGASNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAIQLDPRQKAYLW 124

Query: 121 QRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDP 180
           QRGLSLYYL+RFEEGAEQFR DVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVG DP
Sbjct: 125 QRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDP 184

Query: 181 RPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAAC 240
           RPVMREAYNMFKDGG PEKLVAAFS GR++EYFYASLYAGLY+E++ ++DAAK  IVAAC
Sbjct: 185 RPVMREAYNMFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNEIDAAKVHIVAAC 244

Query: 241 QSTYGQRSDDYMAALAKVHCLCRNWSFS 268
           QS+YGQRSDDYMAAL+KVHC CRNW F+
Sbjct: 245 QSSYGQRSDDYMAALSKVHCQCRNWVFN 257

[Close]

BLAST of CSPI02G04420 vs. NCBI nr
Match: gi|224125100|ref|XP_002319500.1| (hypothetical protein POPTR_0013s01390g [Populus trichocarpa])

HSP 1 Score: 389.8 bits (1000), Expect = 3.8e-105
Identity = 195/255 (76.47%), Postives = 215/255 (84.31%), Query Frame = 1


Query: 12  SVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRLFVPSVSGIWDA 71
           S S   H   T   F+  T T   F S +++P RI     P  + +RRLF+PSVSGIWDA
Sbjct: 16  SSSKHKHSLTTTLPFSPKTHTNSHFFS-TNIPSRIHNLQNPLPTFTRRLFLPSVSGIWDA 75

Query: 72  LTGGNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDR 131
           LTGGNN PR+AV AIRRGMLLFRQGDVLGSL EFDKAIELD RQKAYLWQRGLSLYY+DR
Sbjct: 76  LTGGNNNPREAVMAIRRGMLLFRQGDVLGSLVEFDKAIELDTRQKAYLWQRGLSLYYVDR 135

Query: 132 FEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPRPVMREAYNMF 191
           FEEGA+QFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR+RFLEVGRDPRPVMREAYNMF
Sbjct: 136 FEEGAQQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMF 195

Query: 192 KDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQSTYGQRSDDY 251
           KDGG PEK   AFS+G+ NEYFYASLYAGLYHEA+K+ +AAK  I+AAC+S YGQRSDDY
Sbjct: 196 KDGGDPEKFATAFSNGQGNEYFYASLYAGLYHEAQKEPEAAKVQIIAACRSPYGQRSDDY 255

Query: 252 MAALAKVHCLCRNWS 266
           MA+LAKVHCLCRNWS
Sbjct: 256 MASLAKVHCLCRNWS 269

The following BLAST results are available for this feature:

BLAST of CSPI02G04420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G04420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGH0_CUCSA	1.8e-149	99.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032740 PE=4 SV=1	[more]
A0A067JTV5_JATCU	4.9e-107	76.78	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23268 PE=4 SV=1	[more]
A0A0S3SQI8_PHAAN	1.2e-105	73.88	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G175300 PE=...	[more]
B9I7A8_POPTR	2.7e-105	76.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01390g PE=4 SV=1	[more]
A0A067H254_CITSI	6.6e-104	75.85	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021611mg PE=4 SV=1	[more]

BLAST of CSPI02G04420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05625.1	1.5e-99	79.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CSPI02G04420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454057\|ref\|XP_004144772.1\|	2.5e-149	99.63	PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus]	[more]
gi\|659070214\|ref\|XP_008453971.1\|	4.3e-141	94.76	PREDICTED: uncharacterized protein LOC103494530 [Cucumis melo]	[more]
gi\|802755995\|ref\|XP_012088962.1\|	7.0e-107	76.78	PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]	[more]
gi\|965608598\|dbj\|BAT95089.1\|	1.7e-105	73.88	hypothetical protein VIGAN_08175300 [Vigna angularis var. angularis]	[more]
gi\|224125100\|ref\|XP_002319500.1\|	3.8e-105	76.47	hypothetical protein POPTR_0013s01390g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04420.1	CSPI02G04420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 77..240 score: 3.5
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 77..234 score: 4.88
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 81..148 score: 13
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 115..148 score: 5.9coord: 81..114 score: 9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G04420	Cla019942	Watermelon (97103) v1	cpiwmB149
CSPI02G04420	Csa2G032740	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G04420	MELO3C004212	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G04420	ClCG02G015230	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G04420	Lsi11G006080	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G04420	MELO3C004212.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G04420	CsaV3_2G006780	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G04420	Cla97C02G041010	Watermelon (97103) v2	cpiwmbB120
CSPI02G04420	Bhi06G001299	Wax gourd	cpiwgoB129
CSPI02G04420	Cucsa.090940	Cucumber (Gy14) v1	cgycpiB097
CSPI02G04420	CmaCh05G010940	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G04420	CmoCh05G011090	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G04420	Cp4.1LG11g08960	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G04420	CsGy2G004560	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G04420	Carg12022	Silver-seed gourd	carcpiB0596

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G04420	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G04420	Cucurbita maxima (Rimu)	cmacpiB357
CSPI02G04420	Cucurbita maxima (Rimu)	cmacpiB900
CSPI02G04420	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G04420	Cucurbita moschata (Rifu)	cmocpiB349
CSPI02G04420	Cucumber (Chinese Long) v2	cpicuB063
CSPI02G04420	Melon (DHL92) v3.5.1	cpimeB113
CSPI02G04420	Watermelon (Charleston Gray)	cpiwcgB161
CSPI02G04420	Watermelon (97103) v1	cpiwmB120
CSPI02G04420	Watermelon (97103) v1	cpiwmB180
CSPI02G04420	Cucurbita pepo (Zucchini)	cpecpiB821
CSPI02G04420	Bottle gourd (USVL1VR-Ls)	cpilsiB134
CSPI02G04420	Melon (DHL92) v3.6.1	cpimedB109
CSPI02G04420	Silver-seed gourd	carcpiB0073
CSPI02G04420	Silver-seed gourd	carcpiB0916
CSPI02G04420	Cucumber (Chinese Long) v3	cpicucB078
CSPI02G04420	Watermelon (97103) v2	cpiwmbB154
CSPI02G04420	Wild cucumber (PI 183967)	cpicpiB013