CSPI02G00980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G00980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 638636 .. 642305 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGTGAGAAATGTTTTCATCCTTTTTTTTCTCTCTTTTTTCAGTTTTCTTTTTCTTTTTTTTCGCTCGGTCCCTCTCTTTTAGGCACGTGACCATTCTTTGTCCCGTTCCTCTTACTTTTCTTCGGATTTATTCTTTTCCAATTTTTTCCTTTACTAAAATAATTTTCGGAACTATATATATAATAACATGGTTTTCTAAACGGTCGGTTGTTGAATATATATATATATATTTAATTTTACAAATATACAGCGAGATCCGTAAGTCTATAAACGACTTAACGGTAGAAATCTATTATCATAATACACGACCATCTATCACTGAGAGAAGTCTATCACATGTATATTTTGTTATATTTACAATTTTATTTTAAATGTTGGTATATAAGAAGTTGCCACAAATTATAATTATCCCAAAAAAAGTGACGATTGAAATCAAGTGGGTTTTTTTTAGTATAGTTGCATCGGGTAATACTTTTAGGTATAATAAGTGTATAACAACTTTTATAAGAAATTGTAAACATAACAAAATCTATTAACGATAAACTATTACTATTGGTTATATGGTTAATCCCTTTAACAAAATCTATTTACACTCTATGACAAAACTAAGAGTAATGAGTGTTTGTACTAGGCTTTTGAGCGGTAAATAATTTGTCTTTTTTATTATTCTTGAAAAAACTCTAATATTACTCTTACTTTTAAATTGATAAAATATTTATACTTTATAAAAGGAACATTTTTAAATTTAGTATAATAAATTAAAATATTTACAAACTATCACAAAATTTTAGATTTTATCAACGATAGAAACTAATAATTTTTTATCACTATCTATGAATGTCACTTGGTAGAATCTGAAATTTTTTTATATGTTGTAAATATATGGTTAAATTTGTTATTTTTGTCGATTTTCCTTTATAAAAGAATCAAGTTTAATTAATTTTATTTTTAAGTAATTTTGTTATATTGAATGTAAATATTTTATCCATTTTTTCTATTTTGAAAAAAAAAAACCTCTATAATTTTCTTCATTTATTATCTCCATTTTATTAATTGTTTAAAAAAACAATTTTTAAGTTATTGTTTATATTTTAACGTTTGACAAACAATTCAACCATGGTTCTTAAAAATGATGCAAATTATTGTTTGAAATGGAGAGGAAATATGTTTCATTTTCAAACACAAAATGACATCCAATAAGGCTTTAAATAAGCATTCCGTTTTTAATTAAATTTACTAACATCTCTTCTATCTCTAAATCTTTTGCATAAATATCTTGTATTGATTTATATTTTAAAAATCGAGTCAAAATTTAAAATTTAAATTGTTTTTAAATTTTAGAATTTTTTTCCATTTTAAAATATATAAAAGAAATAGTCATTTATCCATAGTTTCATGATTGAAAGACATGAAACACTTTAGTAAAATCATAAATTTTCAATCATTATCAATAATTTATTAGGTCGCTATAAATGTGAAAAAAAGTTAGATATAAAATATCAATATAACAACATATATATTCTCTATTTTTAACTTGAATTTAAATTACTTACTCTAACAAAATAATTTAGTCATTTCTTCGTACTAGTTTTTGATTTATAAACTTATACAAATATTTAAAATAACTTTTTATTAGATTAGAATCTAATTTACGTATCTATTACCAAATAAATATTTAAAATCAAGAGACAGTATAGTTATACGTCTCTCTCGAGAAATTCAATAAAATTTGAACGATCTCTAAAAATAGAAACCTTTATATTCTTTTTTTTTTCTTTACAATATATGAACAAAACGACCTATTTAACATTTTACAATAGAAACAACAAGATATATGAGCAATGTTGGGTAAGACAACTCTAAAAGGTTGATTTGGTGCAATTTCATTGACTATAAAGTTTCTAATTAACCTCATTTTGTTAGAACTTGGGAAAAAAAGAATGTGATTACATTTATTGCAAGAAGTTGGTGCGCATAATTATTATATATGGGCATGTTACCTTTTTTCTTTTCTTTTTCCATATTCATATCACATTTATTTTAATCCTTAAAGTAGGTGACTTTTGGTGTTTAACACATTTTAGAATGATTTTAAAAGAGTTATTATATTTCACTTTTCATTAATTGATTGTCTGATAATGGAGTTTGAGTAACTATTTCGTTGTCAATGGGTGGTGCATATTCTTACAATATCTCTTTGGAAGCTAAAAGCTAAAATATATCACGTTTGTCAATACACAGAAAACTTGTTTCTAAGGATGATAAGGATAAAATTACCTTTCGCTTGTGAAAAGACTCGTTTAACCATGAGAATCTCCTGCTTGCATAATGATAGAAACTCAGCTCTCAGTACTAAATGCTCTCACTCATATTCATTGTTTGTCTTGCAAAAGTAGTCATGACAACTACTTGATGCTTGTGCTAAATGCTCCCACTTTGTCTCCCTGCATCTTTCTCGTTTGTCTTGTATATGGGAGAAATTGAGAGTCCGACATTGAAAAAATCAAGGAGACTCATACTCCATATAAGATAGATGAACTAGTTTGTAAAGTCATTGATATACTGTATTTGAAATTCCATGAGCAACTCCGGTAAAACATAAAAGAGAATGTGGAAAGGAAGATAAATGGGTAGAACGCGATATTAAAAAAATGACGAGAGAAGTTTTTGTACGAGGCACGACTAGGCGAGGAACAAACTAAATATTGGATTTAAAAAAGAATGAAAAAACCAGAGGAAAGAAAGAAGAAATATTGCATTCGAAATTAAAGTGATAATCCACCGTGACGTCGATATAAAAAAGGACCAAATTTCATTGATTTTCAAACTTGAGGTTAATTTTCATTAGGTAAATAGGTGAAATCCAATTTTCTCATTTAACTTAACAAAGTATAATTTCAATTTAAATTTTTATCTAATAAATTAATGCAACTAATTTTAAAACAGAGAGTTTGCAAAAATAGCAAAAAAAAAATTATGATAATAGAGTTAATTGTCACTTATATTCTCTAACTCGCAAAAATAACAAATTTAAAATCAAACTATAATTACTAGGCTTATTTATCAAATTTGCAATATATAAAAAGATGTGTTATCAAATTTGCAATATATAAAAAGATGTGTTATGAGTCGTTTTTTCAATTTTTTTTTCTTGTCATTGAATGCAATTTACGTTTTAGTATCATGAGCAGTAAATTTATATTTATAATCTTGAAATAATGAACTAAATTTATAGTTTCAAAATTTAGAATCAAATAGATATATAGTTTTAAATTGACCTAATAATTGTTGTAATATACACTTTTACCCTTACTTCCTATTAATATTGAGATAAACTAAAATTTATTTATAAGTCTTTTATTTTCCAGGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

mRNA sequence

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

Coding sequence (CDS)

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA
Homology
[Close]
BLAST of CSPI02G00980 vs. TrEMBL
Match: A0A0A0LIS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G002520 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.6e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

[Close]
BLAST of CSPI02G00980 vs. NCBI nr
Match: gi|700205478|gb|KGN60597.1| (hypothetical protein Csa_2G002520 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 6.6e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

The following BLAST results are available for this feature:
BLAST of CSPI02G00980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G00980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIS3_CUCSA4.6e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G002520 PE=4 SV=1[more]
BLAST of CSPI02G00980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G00980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205478|gb|KGN60597.1|6.6e-50100.00hypothetical protein Csa_2G002520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G00980.1CSPI02G00980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G00980Csa2G002520Cucumber (Chinese Long) v2cpicuB065
CSPI02G00980CsaV3_2G002060Cucumber (Chinese Long) v3cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G00980Cucumber (Chinese Long) v3cpicucB073
CSPI02G00980Watermelon (97103) v2cpiwmbB105
CSPI02G00980Watermelon (97103) v2cpiwmbB151
CSPI02G00980Watermelon (97103) v2cpiwmbB159
CSPI02G00980Wax gourdcpiwgoB144
CSPI02G00980Wax gourdcpiwgoB132
CSPI02G00980Wax gourdcpiwgoB214
CSPI02G00980Wild cucumber (PI 183967)cpicpiB009
CSPI02G00980Cucumber (Gy14) v1cgycpiB152
CSPI02G00980Cucumber (Gy14) v1cgycpiB349
CSPI02G00980Cucurbita maxima (Rimu)cmacpiB073
CSPI02G00980Cucurbita maxima (Rimu)cmacpiB116
CSPI02G00980Cucurbita maxima (Rimu)cmacpiB174
CSPI02G00980Cucurbita maxima (Rimu)cmacpiB800
CSPI02G00980Cucurbita moschata (Rifu)cmocpiB066
CSPI02G00980Cucurbita moschata (Rifu)cmocpiB108
CSPI02G00980Cucurbita moschata (Rifu)cmocpiB158
CSPI02G00980Cucurbita moschata (Rifu)cmocpiB159
CSPI02G00980Cucurbita moschata (Rifu)cmocpiB787
CSPI02G00980Melon (DHL92) v3.5.1cpimeB131
CSPI02G00980Melon (DHL92) v3.5.1cpimeB140
CSPI02G00980Watermelon (Charleston Gray)cpiwcgB102
CSPI02G00980Watermelon (Charleston Gray)cpiwcgB165
CSPI02G00980Watermelon (97103) v1cpiwmB123
CSPI02G00980Watermelon (97103) v1cpiwmB165
CSPI02G00980Watermelon (97103) v1cpiwmB176
CSPI02G00980Cucurbita pepo (Zucchini)cpecpiB100
CSPI02G00980Cucurbita pepo (Zucchini)cpecpiB370
CSPI02G00980Cucurbita pepo (Zucchini)cpecpiB665
CSPI02G00980Cucurbita pepo (Zucchini)cpecpiB822
CSPI02G00980Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G00980Bottle gourd (USVL1VR-Ls)cpilsiB130
CSPI02G00980Melon (DHL92) v3.6.1cpimedB133
CSPI02G00980Cucumber (Gy14) v2cgybcpiB056
CSPI02G00980Cucumber (Gy14) v2cgybcpiB104
CSPI02G00980Silver-seed gourdcarcpiB0044
CSPI02G00980Silver-seed gourdcarcpiB0143
CSPI02G00980Silver-seed gourdcarcpiB0224
CSPI02G00980Silver-seed gourdcarcpiB0603
CSPI02G00980Silver-seed gourdcarcpiB0934