CSPI01G34500 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G34500
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDNA-directed RNA polymerase II
LocationChr1 : 29409623 .. 29411233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTGTCAGAGGAAGAAATCACCAAACTCTTTAGAGCACGCAAAACCGTGTTACAGATGTTGAGAGACAGAGGATTCGTTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGGTGAGACCATGAAAAAAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGTATAGTTTCATGCTAGTTCGTACCTCCAAACTTGTTTGCCATGATTTCTGCCGAGGAACTTCATCTCGGCTCCTAAACACAGGATTCCTAATTCAATTCTAACATATTAACTCAAAATTTCCAACTCAATTTAGTGCCTCAAACACCTCTTAATTGTATAAAACAAGGTCTCAGTGACTCAGGCAGTTTGAACATGTTTAAACTTTACCTTGGTAAATTCCCTTAGGAGAAGTTTGTATTTGAGTCATTCTCAAGTATTTTGACATGGAAATTACTTAGCTATCTAACATCAAGTAATATATAATACTATTTGATAAATATTTACCAATTTTATGTTAAGTTTGGTTATAGGGATGTACAGGCTATTTGTTAATCCTTTTATTTGTTCCCCTCCGTTAATTTGTGACTCTTTTACGCAGATATATGTTTTCTTTCCTGAAGAGCCAAAGGTTAGTGTCAAGACAGTGCGAACATATATAAATCGTATGAAATCAGATAATGTTTTTAGAGCAATATTGGTTGTTCAAGAAAAATTGTCCTCCTTTGCTCGTTCTAGTATCTGCGAAGCACCTAAATTCCATTTGGAGGTTTTCCAGGTAAAAATTAATTAATCTCTGAATAATTTCTGGAGCCTTTTAATGTCAGATATACTATAAATATCTTCTATGCTCCTATCCTAAAACTAGTTCTCATACTTTTGTTGACTCTCACATCGACAGTGAGAATGAAGGGGTTTAGGGGGTAAATAATGGTAAGTTAGTTTGTAATTACATATGTGATTTCCGTTTTTCCATATAATAATGCTTTTGCATACACTCTTTTTTTTTTACTGAAGTTAATGTTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGCTGGTTAACATTAAAGATCACGTTCTCATTCCGGAGCACCAGTTGTTGACAAATGAAGATAAGAAGACGTTGCTGGAGAGGTATACGGTGAAAGATACACAAGTGAGTTTGTTTTATTTGATCTATTTTCTTGAAATACAAGAACATTGTGAGAATTGTTTCCATAAACATGTTGAAATGACATTGGTAGATTGGGCCTTGGTGAAGAAGGGCTTTGTAAATAATAGAACTTTTATGAAAGATTTAATATTCTCGGAGTTACATTGACTATCAAATATAGTAGGGTTAGGCAGTTTTGTTAGAACAGTACTGGAGGTGCATGCAACTTGGCTTTGACACTCTTGGATACATGTTGAAATGTGTGTAGGTTAGTTCCTAATGTGATTTCGTATTTTGTCTTAGCTACCTCGCATGCAGGTTACTGATCCAATTGCTAGATATTATGGAATGAAGCGTGGACAGGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACATACAGATATGTTGTTTGA

mRNA sequence

ATGGTGTTGTCAGAGGAAGAAATCACCAAACTCTTTAGAGCACGCAAAACCGTGTTACAGATGTTGAGAGACAGAGGATTCGTTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGGTGAGACCATGAAAAAAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATGTTTTCTTTCCTGAAGAGCCAAAGGTTAGTGTCAAGACAGTGCGAACATATATAAATCGTATGAAATCAGATAATGTTTTTAGAGCAATATTGGTTGTTCAAGAAAAATTGTCCTCCTTTGCTCGTTCTAGTATCTGCGAAGCACCTAAATTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGCTGGTTAACATTAAAGATCACGTTCTCATTCCGGAGCACCAGTTGTTGACAAATGAAGATAAGAAGACGTTGCTGGAGAGGTATACGGTGAAAGATACACAACTACCTCGCATGCAGGTTACTGATCCAATTGCTAGATATTATGGAATGAAGCGTGGACAGGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACATACAGATATGTTGTTTGA

Coding sequence (CDS)

ATGGTGTTGTCAGAGGAAGAAATCACCAAACTCTTTAGAGCACGCAAAACCGTGTTACAGATGTTGAGAGACAGAGGATTCGTTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGGTGAGACCATGAAAAAAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATGTTTTCTTTCCTGAAGAGCCAAAGGTTAGTGTCAAGACAGTGCGAACATATATAAATCGTATGAAATCAGATAATGTTTTTAGAGCAATATTGGTTGTTCAAGAAAAATTGTCCTCCTTTGCTCGTTCTAGTATCTGCGAAGCACCTAAATTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGCTGGTTAACATTAAAGATCACGTTCTCATTCCGGAGCACCAGTTGTTGACAAATGAAGATAAGAAGACGTTGCTGGAGAGGTATACGGTGAAAGATACACAACTACCTCGCATGCAGGTTACTGATCCAATTGCTAGATATTATGGAATGAAGCGTGGACAGGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACATACAGATATGTTGTTTGA
Homology
[Close]
BLAST of CSPI01G34500 vs. Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-78
Identity = 143/205 (69.76%), Postives = 182/205 (88.78%), Query Frame = 1 

Query: 2   VLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMR 61
           +L+EEE+ +L+R +KT++QMLRDRG+ + D EL M+++QF  ++G+ MK+EDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APKF 121
           N++SDQ+Y+FFP+E KV VKT++ Y NRMKS+NVFRAILVVQ+ L+ FAR+ I E + KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 181
           HLEVFQEAE+LVNIK+HVL+PEHQ+LT E+KKTLLERYTVK+TQLPR+QVTDPIARY+G+
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 206
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]
BLAST of CSPI01G34500 vs. Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-52
Identity = 100/206 (48.54%), Postives = 152/206 (73.79%), Query Frame = 1 

Query: 5   EEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETM-----KKEDLVINKS 64
           EEE  +L++ RKT++Q+  DRG++V   EL  + E+FK Q+G+       ++ DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-AP 124
             ++ +DQ++VFFPEEPKV +KT++ Y  RM+ +N+ RA++VVQ+ ++  A+ S+ + AP
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 184
           K+ LE F + ELL+NI +H L+PEH ++T E+   LL RY ++++QLPR+Q  DP+ARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 205
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]
BLAST of CSPI01G34500 vs. Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-52
Identity = 100/206 (48.54%), Postives = 152/206 (73.79%), Query Frame = 1 

Query: 5   EEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETM-----KKEDLVINKS 64
           EEE  +L++ RKT++Q+  DRG++V   EL  + E+FK Q+G+       ++ DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-AP 124
             ++ +DQ++VFFPEEPKV +KT++ Y  RM+ +N+ RA++VVQ+ ++  A+ S+ + AP
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 184
           K+ LE F + ELL+NI +H L+PEH ++T E+   LL RY ++++QLPR+Q  DP+ARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 205
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]
BLAST of CSPI01G34500 vs. Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 99/206 (48.06%), Postives = 151/206 (73.30%), Query Frame = 1 

Query: 5   EEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETM-----KKEDLVINKS 64
           EEE  +L++ RKT++Q+  DRG++V   EL  + E+F+ Q+G+       ++ DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-AP 124
             ++ +DQ++VFFPEEPKV +KT++ Y  RM+ +N+ RA++VVQ+ ++  A+ S+ + AP
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 184
           K+ LE F + ELL+NI +H L+PEH ++T E+   LL RY +++ QLPR+Q  DP+ARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 205
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]
BLAST of CSPI01G34500 vs. Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-51
Identity = 108/211 (51.18%), Postives = 150/211 (71.09%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKE-----DLV 60
           M   E E  +L+R RKTVLQM+ DRG++V   EL    E FK QYG+   ++     DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 61  INKSMRNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSIC 120
           I  +  ++ +DQ++VFFPE+ K+ +KT++    +M+  N+ RAI+VVQ  ++  A+ SI 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 E-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPI 180
           + APK+ LE F EAEL+VNI +H L+PEH ++T E+K  LL RY +KD+QLPR+Q  DP+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180

Query: 181 ARYYGMKRGQVVKIIRPSETAGRYVTYRYVV 206
           ARY+G++RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]
BLAST of CSPI01G34500 vs. TrEMBL
Match: A0A0A0LYM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702030 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 9.8e-108
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM
Sbjct: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120
           RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF
Sbjct: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120

Query: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180
           HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM
Sbjct: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180

Query: 181 KRGQVVKIIRPSETAGRYVTYRYVV 206
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]
BLAST of CSPI01G34500 vs. TrEMBL
Match: W9RWL5_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_003651 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.6e-86
Identity = 161/205 (78.54%), Postives = 190/205 (92.68%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSE+EIT+LFR R+TV+QMLRDR ++VGDFEL M++EQF+N+YGE MK+EDL+INKS 
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APK 120
           RN+S DQIYVFFPEE KV VKT++TYINRMKS+NV RA+LVVQ+ L+ FAR+ I E + K
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYG 180
           FHLEVFQEAELLVNIK+HVL+PEHQ+LTNE+KKTLLERYTVK+TQLPR+QVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYV 205
           +KRGQVVKIIRPSETAGRY+TYRYV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYV 205

[Close]
BLAST of CSPI01G34500 vs. TrEMBL
Match: A0A0A0K8L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.7e-86
Identity = 164/207 (79.23%), Postives = 186/207 (89.86%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEIT+LFR RKTV QMLRDRG+ VGDFE+ M+REQFK +YGE MK+ED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEA--P 120
           RN+SSDQIYVFFPEE KV +K ++TY  RMKS+NVFRAILVVQ+ L+ FAR+ + EA   
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 180
            FHLEVFQEAELLVNIKDHVL+PEHQLL NE+KKTLLERYTVK+TQLPR+QVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GMKRGQVVKIIRPSETAGRYVTYRYVV 206
           G+KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]
BLAST of CSPI01G34500 vs. TrEMBL
Match: V4UJN2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009504mg PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.4e-84
Identity = 160/206 (77.67%), Postives = 189/206 (91.75%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           M LS+EEI +LFR R+TV+QMLRDRG+ VGDFE+ MS+EQF  ++GE MK+EDLVINK++
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APK 120
           RN+SSDQIYVFFP+E KV VKT++TY NRMKS+NVFRAILVVQ+ L+ FAR+ I E + K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 121 FHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYG 180
           FHLEVFQEAELLVNIK+HVL+PEHQ+LTNE+KKTLL+RYTVK+TQLPR+QVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 206
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]
BLAST of CSPI01G34500 vs. TrEMBL
Match: A0A0A0KF69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.4e-84
Identity = 163/207 (78.74%), Postives = 181/207 (87.44%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MV  EEEITKLFR RKTVLQML+DRG+ VGDFEL MS+ QFKN++GE MK+EDLVINKS 
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE--AP 120
           RNNSSDQIYVFFPEEPKV +K V TY+ RMKS+NVFRAI VVQ  L+ FAR+ I E  + 
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 180
           K HLEVFQE ELLVNIK+HVLIPEHQ LT+E+KKTLL RYTVK+TQLPRMQVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GMKRGQVVKIIRPSETAGRYVTYRYVV 206
           G+KRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]
BLAST of CSPI01G34500 vs. TAIR10
Match: AT3G22320.1 (AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-79
Identity = 143/205 (69.76%), Postives = 182/205 (88.78%), Query Frame = 1 

Query: 2   VLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMR 61
           +L+EEE+ +L+R +KT++QMLRDRG+ + D EL M+++QF  ++G+ MK+EDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APKF 121
           N++SDQ+Y+FFP+E KV VKT++ Y NRMKS+NVFRAILVVQ+ L+ FAR+ I E + KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 181
           HLEVFQEAE+LVNIK+HVL+PEHQ+LT E+KKTLLERYTVK+TQLPR+QVTDPIARY+G+
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 206
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]
BLAST of CSPI01G34500 vs. TAIR10
Match: AT5G57980.1 (AT5G57980.1 RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 96/206 (46.60%), Postives = 144/206 (69.90%), Query Frame = 1 

Query: 5   EEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKK---EDLVINKSMR 64
           ++EIT++F+ R+TVLQMLRDRG+ + + +L + RE+F  ++ +TM K   E L ++ +  
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYVFFPEEPKVSVKTVRTYIN-RMKSDNVFRAILVVQEKLSSFARSSICEAPKF 124
            N +D+IYVF+PE PKV V  ++  +  +M+ D V R I+VV   +++ AR ++ E  K 
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 -HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYG 184
             +EVF+EAEL+ NI +H L+ ++ +L ++ KK LL  YTV+DTQLPR+ VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 MKRGQVVKIIRPSETAGRYVTYRYVV 206
           +KRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]
BLAST of CSPI01G34500 vs. TAIR10
Match: AT2G41340.1 (AT2G41340.1 RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 76/202 (37.62%), Postives = 127/202 (62.87%), Query Frame = 1 

Query: 4   SEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMRNN 63
           S  E  K + AR+T ++MLRDRG+ V D ++ +S +QF+  YGE    + L I+   R +
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYVFFPEEPKVSVKTVRTY-INRMKSDNVFRAILVVQEKLSSFARSSICEAPKFHL 123
           SS +I V F     V V  +R    + +  +N+   ILV+Q  +++ A  ++ E   F +
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAV-ELFSFKV 136

Query: 124 EVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMKR 183
           E+F+  +LLVN+  HVL P+HQ+L +++K++LL+++++++ QLPR+   DPI RYYG++ 
Sbjct: 137 ELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLET 196

Query: 184 GQVVKIIRPSETAGRYVTYRYV 205
           GQV+K+    E +  +VTYR V
Sbjct: 197 GQVMKVTYKDELSESHVTYRCV 217

[Close]
BLAST of CSPI01G34500 vs. TAIR10
Match: AT3G57080.1 (AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 75/203 (36.95%), Postives = 124/203 (61.08%), Query Frame = 1 

Query: 3   LSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMRN 62
           LS EE  + + AR+  LQMLRDRG+ V D ++ +S   F+  YGE    + L I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  NSSDQIYVFFPEEPKVSVKTVRTYI-NRMKSDNVFRAILVVQEKLSSFARSSICEAPKFH 122
           +S+ ++ + F     V V  +R+ + + +  + +   ILV+Q  +++ A  +I E   F 
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFSFK 139

Query: 123 LEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMK 182
           +E+FQ  +LLVNI  H L P+HQ+L +E+K TLL+++++++ QLPR+   D I RYYG++
Sbjct: 140 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLE 199

Query: 183 RGQVVKIIRPSETAGRYVTYRYV 205
           +GQVVK+    E    +V +R V
Sbjct: 200 KGQVVKVNYRGELTESHVAFRCV 221

[Close]
BLAST of CSPI01G34500 vs. TAIR10
Match: AT3G54490.1 (AT3G54490.1 RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-30
Identity = 73/200 (36.50%), Postives = 120/200 (60.00%), Query Frame = 1 

Query: 7   EITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMRNNSSD 66
           E  + + AR T  +MLRDRG+ V + EL+++  +F++ +GE  + E L I   +R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEPKVSVKTVRT-YINRMKSDNVFRAILVVQEKLSSFARSSICEAPKFHLEVF 126
           +I V F     ++VK+VR  +I    +  +   ILV+Q K++ FA+ ++   P F +E F
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFP-FTVETF 154

Query: 127 QEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMKRGQV 186
              +LLVNI  H+  P+ ++L  E+K+ LL ++ ++D QLP +Q  D   RYYG+K+ QV
Sbjct: 155 PIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQV 214

Query: 187 VKIIRPSETAGRYVTYRYVV 206
           VKI    E  G +VTYR ++
Sbjct: 215 VKITYSKEPVGDFVTYRCII 233

[Close]
BLAST of CSPI01G34500 vs. NCBI nr
Match: gi|449455411|ref|XP_004145446.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM
Sbjct: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120
           RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF
Sbjct: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120

Query: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180
           HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM
Sbjct: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180

Query: 181 KRGQVVKIIRPSETAGRYVTYRYVV 206
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]
BLAST of CSPI01G34500 vs. NCBI nr
Match: gi|659118294|ref|XP_008459046.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 2.9e-105
Identity = 199/205 (97.07%), Postives = 204/205 (99.51%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEIT+LFR RKTVLQMLRDRGF+VGDFELAMSREQFKNQ+GETMKKED+VINKSM
Sbjct: 1   MVLSEEEITRLFRVRKTVLQMLRDRGFLVGDFELAMSREQFKNQFGETMKKEDIVINKSM 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120
           RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF
Sbjct: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEAPKF 120

Query: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180
           HLEVFQEAELLVNIKDHVLIPEHQLLTNE+KKTLLERYTVKDTQLPRMQVTDPIARYYGM
Sbjct: 121 HLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTLLERYTVKDTQLPRMQVTDPIARYYGM 180

Query: 181 KRGQVVKIIRPSETAGRYVTYRYVV 206
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]
BLAST of CSPI01G34500 vs. NCBI nr
Match: gi|659100689|ref|XP_008451219.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.8e-86
Identity = 165/207 (79.71%), Postives = 187/207 (90.34%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEIT+LFR RKTV QMLRDRG+ VGDFE+ M+REQFK +YGE MK+ED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEA--P 120
           RN+SSDQIYVFFPEE KV +K ++TY  RMKS+NVFRAILVVQ+ L+ FAR+ + EA   
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 180
            FHLEVFQEAELLVNIKDHVL+PEHQLLTNE+KKTLLERYTVK+TQLPR+QVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GMKRGQVVKIIRPSETAGRYVTYRYVV 206
           G+KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]
BLAST of CSPI01G34500 vs. NCBI nr
Match: gi|703140945|ref|XP_010107375.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus notabilis])

HSP 1 Score: 325.9 bits (834), Expect = 5.2e-86
Identity = 161/205 (78.54%), Postives = 190/205 (92.68%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSE+EIT+LFR R+TV+QMLRDR ++VGDFEL M++EQF+N+YGE MK+EDL+INKS 
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APK 120
           RN+S DQIYVFFPEE KV VKT++TYINRMKS+NV RA+LVVQ+ L+ FAR+ I E + K
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYG 180
           FHLEVFQEAELLVNIK+HVL+PEHQ+LTNE+KKTLLERYTVK+TQLPR+QVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYV 205
           +KRGQVVKIIRPSETAGRY+TYRYV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYV 205

[Close]
BLAST of CSPI01G34500 vs. NCBI nr
Match: gi|449462431|ref|XP_004148944.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 6.8e-86
Identity = 164/207 (79.23%), Postives = 186/207 (89.86%), Query Frame = 1 

Query: 1   MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
           MVLSEEEIT+LFR RKTV QMLRDRG+ VGDFE+ M+REQFK +YGE MK+ED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICEA--P 120
           RN+SSDQIYVFFPEE KV +K ++TY  RMKS+NVFRAILVVQ+ L+ FAR+ + EA   
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KFHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYY 180
            FHLEVFQEAELLVNIKDHVL+PEHQLL NE+KKTLLERYTVK+TQLPR+QVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GMKRGQVVKIIRPSETAGRYVTYRYVV 206
           G+KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

The following BLAST results are available for this feature:
BLAST of CSPI01G34500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB5A_ARATH2.3e-7869.76DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRP... [more]
RPAB1_MOUSE4.9e-5248.54DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Po... [more]
RPAB1_RAT4.9e-5248.54DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ... [more]
RPAB1_PONAB1.4e-5148.06DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=PO... [more]
RPAB1_CAEEL1.9e-5151.18DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele... [more]
BLAST of CSPI01G34500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYM6_CUCSA9.8e-108100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702030 PE=3 SV=1[more]
W9RWL5_9ROSA3.6e-8678.54DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN... [more]
A0A0A0K8L9_CUCSA4.7e-8679.23Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1[more]
V4UJN2_9ROSI4.4e-8477.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009504mg PE=3 SV=1[more]
A0A0A0KF69_CUCSA4.4e-8478.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1[more]
BLAST of CSPI01G34500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22320.11.3e-7969.76 Eukaryotic rpb5 RNA polymerase subunit family protein[more]
AT5G57980.11.6e-4546.60 RNA polymerase II fifth largest subunit, C[more]
AT2G41340.12.3e-3137.62 RNA polymerase II fifth largest subunit, D[more]
AT3G57080.11.5e-3036.95 Eukaryotic rpb5 RNA polymerase subunit family protein[more]
AT3G54490.17.3e-3036.50 RNA polymerase II fifth largest subunit, E[more]
BLAST of CSPI01G34500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455411|ref|XP_004145446.1|1.4e-107100.00PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativ... [more]
gi|659118294|ref|XP_008459046.1|2.9e-10597.07PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis melo][more]
gi|659100689|ref|XP_008451219.1|1.8e-8679.71PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo][more]
gi|703140945|ref|XP_010107375.1|5.2e-8678.54DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus notabilis][more]
gi|449462431|ref|XP_004148944.1|6.8e-8679.23PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000783RNA_pol_subH/Rpb5_C
IPR005571RNA_pol_Rpb5_N
IPR014381DNA_RNA_pol_RPB5_euk/virus
IPR020609RpoH/RPB5
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051604 protein maturation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0000418 DNA-directed RNA polymerase IV complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G34500.1CSPI01G34500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPRODOMPD005155coord: 139..204
score: 4.0
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalGENE3DG3DSA:3.90.940.20coord: 133..205
score: 2.5
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 132..204
score: 4.1
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalunknownSSF55287RPB5-like RNA polymerase subunitcoord: 130..205
score: 1.96
IPR005571RNA polymerase, Rpb5, N-terminalGENE3DG3DSA:3.40.1340.10coord: 4..132
score: 2.5
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 5..90
score: 7.9
IPR005571RNA polymerase, Rpb5, N-terminalunknownSSF53036Eukaryotic RPB5 N-terminal domaincoord: 5..133
score: 1.83
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRPIRSF000747RPB5coord: 1..205
score: 2.0
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 132..205
score: 2
NoneNo IPR availablePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 4..205
score: 2.0E
NoneNo IPR availablePANTHERPTHR10535:SF4SUBFAMILY NOT NAMEDcoord: 4..205
score: 2.0E