CSPI01G34340 (gene) Wild cucumber (PI 183967)

NameCSPI01G34340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 29243028 .. 29243366 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCATCCTTTACGGCTAAGTTATCGACCATAAATGAGCTTTTGATGGTCTTAGTTAAGGTATAATTGTCTTCAAGTTTCCCTATTGCTTGTTTTTTTTTTATTTAAGGAGTAACAATGGTGTTTCTATTGCTTCGTTAATAGGACAAGGCGGTTGACTCCCAACAATGCTATGGTGGTAGTGAAGGTTCGTCGTTTAATGCATCAGAAGTTGAGAATAGAGTGGATGATGTATTCATGGATGTTCCCACTCCAAACATTGATGATCAACACGTTGACGACAAGACAATAACATCCATCAGTGAAGATCTTGGAGATGGTATCGTATCTAGATAA

mRNA sequence

ATGCAGTCATCCTTTACGGCTAAGTTATCGACCATAAATGAGCTTTTGATGGTCTTAGTTAAGGACAAGGCGGTTGACTCCCAACAATGCTATGGTGGTAGTGAAGGTTCGTCGTTTAATGCATCAGAAGTTGAGAATAGAGTGGATGATGTATTCATGGATGTTCCCACTCCAAACATTGATGATCAACACGTTGACGACAAGACAATAACATCCATCAGTGAAGATCTTGGAGATGGTATCGTATCTAGATAA

Coding sequence (CDS)

ATGCAGTCATCCTTTACGGCTAAGTTATCGACCATAAATGAGCTTTTGATGGTCTTAGTTAAGGACAAGGCGGTTGACTCCCAACAATGCTATGGTGGTAGTGAAGGTTCGTCGTTTAATGCATCAGAAGTTGAGAATAGAGTGGATGATGTATTCATGGATGTTCCCACTCCAAACATTGATGATCAACACGTTGACGACAAGACAATAACATCCATCAGTGAAGATCTTGGAGATGGTATCGTATCTAGATAA
BLAST of CSPI01G34340 vs. TrEMBL
Match: A0A0A0M3R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701370 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-35
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 1

Query: 1   MQSSFTAKLSTINELLMVLVKDKAVDSQQCYGGSEGSSFNASEVENRVDDVFMDVPTPNI 60
           MQSSFTAKLS INELLMVLVKDKAVDSQQCYGG EG SFNASEVENRVDDVFMDVPTPNI
Sbjct: 75  MQSSFTAKLSAINELLMVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNI 134

Query: 61  DDQHVDDKTITSISEDLGDGIVSR 85
           DDQHVDDKT TSISEDLGDGIVSR
Sbjct: 135 DDQHVDDKTRTSISEDLGDGIVSR 158

BLAST of CSPI01G34340 vs. TrEMBL
Match: A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-11
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 8   KLSTINELLMVLVKDKAVDSQQCYGGSEGSSFNASEVENRVDDVFMDVPTPNIDDQHVDD 67
           KLS I ELLMVLVK   VDSQ  YGG EG SFN  E +  V D F+DV T  IDD+ VD+
Sbjct: 190 KLSIIRELLMVLVK--VVDSQPYYGGGEGLSFNTLESQTLVGDAFVDVFTSTIDDKLVDE 249

Query: 68  KTITSISEDLGDGIV 83
           +T TS+S++  DGI+
Sbjct: 250 ETRTSVSDNPKDGII 262

BLAST of CSPI01G34340 vs. NCBI nr
Match: gi|700211765|gb|KGN66861.1| (hypothetical protein Csa_1G701370 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 1

Query: 1   MQSSFTAKLSTINELLMVLVKDKAVDSQQCYGGSEGSSFNASEVENRVDDVFMDVPTPNI 60
           MQSSFTAKLS INELLMVLVKDKAVDSQQCYGG EG SFNASEVENRVDDVFMDVPTPNI
Sbjct: 75  MQSSFTAKLSAINELLMVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNI 134

Query: 61  DDQHVDDKTITSISEDLGDGIVSR 85
           DDQHVDDKT TSISEDLGDGIVSR
Sbjct: 135 DDQHVDDKTRTSISEDLGDGIVSR 158

BLAST of CSPI01G34340 vs. NCBI nr
Match: gi|659098576|ref|XP_008450207.1| (PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-20
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 1

Query: 1   MQSSFTAKLSTINELLMVLVKDKAVDSQQCYGGSEGSSFNASEVENRVDDVFMDVPTPNI 60
           MQSS TA+LSTI ELLM+LVK KAVDSQQCYGG EG+SFNAS+V N VDDVF+D   P I
Sbjct: 26  MQSSITAELSTIKELLMLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSAPII 85

Query: 61  DDQHVDDKTITSISEDLGDGI 82
           D+Q ++++  TSISED  DGI
Sbjct: 86  DNQTINEEMGTSISEDPEDGI 106

BLAST of CSPI01G34340 vs. NCBI nr
Match: gi|700194378|gb|KGN49555.1| (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 8   KLSTINELLMVLVKDKAVDSQQCYGGSEGSSFNASEVENRVDDVFMDVPTPNIDDQHVDD 67
           KLS I ELLMVLVK   VDSQ  YGG EG SFN  E +  V D F+DV T  IDD+ VD+
Sbjct: 190 KLSIIRELLMVLVK--VVDSQPYYGGGEGLSFNTLESQTLVGDAFVDVFTSTIDDKLVDE 249

Query: 68  KTITSISEDLGDGIV 83
           +T TS+S++  DGI+
Sbjct: 250 ETRTSVSDNPKDGII 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M3R6_CUCSA1.2e-3595.24Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701370 PE=4 SV=1[more]
A0A0A0KIM1_CUCSA7.9e-1157.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700211765|gb|KGN66861.1|1.7e-3595.24hypothetical protein Csa_1G701370 [Cucumis sativus][more]
gi|659098576|ref|XP_008450207.1|3.5e-2069.14PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo][more]
gi|700194378|gb|KGN49555.1|1.1e-1057.33hypothetical protein Csa_5G001020 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G34340.1CSPI01G34340.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G34340Csa1G701370Cucumber (Chinese Long) v2cpicuB001
CSPI01G34340CsaV3_1G046200Cucumber (Chinese Long) v3cpicucB000
CSPI01G34340CsGy1G032810Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None