CSPI01G34270 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G34270
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 29154509 .. 29154787 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCGGCTGAGAGGAGACAGATCAGCACAAAACGACTCGCGTGAAGATGGGTAAGTCAAGGACTGACTTGTGCGCGCAACTCGACTTGAAAGGAAGGTAGACTAGAAGACTATTGGCTAGGCATGACGGGTTGTGGCATTTCTTCAATGGACAGTGGAGTTCGAAGGAAAAGCTCAGCTTCACTTGACCCAAACGGTTGGCGGCTTGTCAGACAGTGGAGCGATTGAACCACAGGGCAAAGGCGGACGACGAGGCGAAGGGGTCAATGGGGTCAAG

mRNA sequence

ATGATGCGGCTGAGAGGAGACAGATCAGCACAAAACGACTCGCTGGAGTTCGAAGGAAAAGCTCAGCTTCACTTGACCCAAACGGTTGGCGGCTTGTCAGACAGTGGAGCGATTGAACCACAGGGCAAAGGCGGACGACGAGGCGAAGGGGTCAATGGGGTCAAG

Coding sequence (CDS)

ATGATGCGGCTGAGAGGAGACAGATCAGCACAAAACGACTCGCTGGAGTTCGAAGGAAAAGCTCAGCTTCACTTGACCCAAACGGTTGGCGGCTTGTCAGACAGTGGAGCGATTGAACCACAGGGCAAAGGCGGACGACGAGGCGAAGGGGTCAATGGGGTCAAG
Homology
[Close]
BLAST of CSPI01G34270 vs. TrEMBL
Match: A0A0A0LYJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701290 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK 56
          MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK
Sbjct: 1  MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK 55

[Close]
BLAST of CSPI01G34270 vs. NCBI nr
Match: gi|700211757|gb|KGN66853.1| (hypothetical protein Csa_1G701290 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK 56
          MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK
Sbjct: 1  MMRLRGDRSAQNDSLEFEGKAQLHLTQTVGGLSDSGAIEPQGKGGRRGEGVNGVK 55

The following BLAST results are available for this feature:
BLAST of CSPI01G34270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G34270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ2_CUCSA1.1e-21100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701290 PE=4 SV=1[more]
BLAST of CSPI01G34270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G34270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211757|gb|KGN66853.1|1.6e-21100.00hypothetical protein Csa_1G701290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G34270.1CSPI01G34270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G34270Csa1G701290Cucumber (Chinese Long) v2cpicuB001
CSPI01G34270CsaV3_1G046120Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G34270Cucumber (Gy14) v1cgycpiB496
CSPI01G34270Cucurbita maxima (Rimu)cmacpiB209
CSPI01G34270Cucurbita maxima (Rimu)cmacpiB404
CSPI01G34270Cucurbita moschata (Rifu)cmocpiB196
CSPI01G34270Cucurbita moschata (Rifu)cmocpiB390
CSPI01G34270Melon (DHL92) v3.5.1cpimeB013
CSPI01G34270Watermelon (Charleston Gray)cpiwcgB026
CSPI01G34270Watermelon (97103) v1cpiwmB045
CSPI01G34270Watermelon (97103) v1cpiwmB053
CSPI01G34270Cucurbita pepo (Zucchini)cpecpiB520
CSPI01G34270Bottle gourd (USVL1VR-Ls)cpilsiB034
CSPI01G34270Melon (DHL92) v3.6.1cpimedB013
CSPI01G34270Melon (DHL92) v3.6.1cpimedB022
CSPI01G34270Cucumber (Gy14) v2cgybcpiB002
CSPI01G34270Silver-seed gourdcarcpiB0128
CSPI01G34270Watermelon (97103) v2cpiwmbB011
CSPI01G34270Wax gourdcpiwgoB031