CSPI01G34120 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G34120
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 29041892 .. 29042279 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAACAAAGTGGTGGAGAAAAAGAAAAGAAATCTTCATTTTTTTTCTTTTTTGGGTCTTCTAAACTTGATTCTAGTTATAGGAAGGAAGAAATTTTATCATTATCATCATTATCATAACTGGGTTCCTAAGTTAATGTCCATACATGGGCCAAAATTTCTTTTTGGTTAAATAAATGGGCAAAAAACCCTAACTTGAGGAGATGGGAGACGACGGGCGAGTTCGATGGGCGACGATAGCCAATGACAAAGACGTTCAGAGATGGTCGGTTGCGTTTCAAGTGGTTGAGTTTGTTCGAATATTGTCGGCGGCGTTCGGTGGCATTCGAAGCTGTTCGATGGTCTACGAGCGTTTTCGGAGAGGATGAGAGTGTGAGAAAGGCTTAGGG

mRNA sequence

ATGGGAGACGACGGGCGAGTTCGATGGGCGACGATAGCCAATGACAAAGACGTTCAGAGATGGTCGGTTGCGTTTCAAGTGGTTGAGTTTGTTCGAATATTGTCGGCGGCGTTCGGTGGCATTCGAAGCTGTTCGATGGTCTACGAGCGTTTTCGGAGAGGATGA

Coding sequence (CDS)

ATGGGAGACGACGGGCGAGTTCGATGGGCGACGATAGCCAATGACAAAGACGTTCAGAGATGGTCGGTTGCGTTTCAAGTGGTTGAGTTTGTTCGAATATTGTCGGCGGCGTTCGGTGGCATTCGAAGCTGTTCGATGGTCTACGAGCGTTTTCGGAGAGGATGA
Homology
[Close]
BLAST of CSPI01G34120 vs. TrEMBL
Match: A0A0A0LYH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G700650 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.6e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MGDDGRVRWATIANDKDVQRWSVAFQVVEFVRILSAAFGGIRSCSMVYERFRRG 55
          MGDDGRVRWATIANDKDVQRWSVAF+VVEFVRILSAAFGGIRSCSMVYERFRRG
Sbjct: 1  MGDDGRVRWATIANDKDVQRWSVAFEVVEFVRILSAAFGGIRSCSMVYERFRRG 54

[Close]
BLAST of CSPI01G34120 vs. NCBI nr
Match: gi|700211742|gb|KGN66838.1| (hypothetical protein Csa_1G700650 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MGDDGRVRWATIANDKDVQRWSVAFQVVEFVRILSAAFGGIRSCSMVYERFRRG 55
          MGDDGRVRWATIANDKDVQRWSVAF+VVEFVRILSAAFGGIRSCSMVYERFRRG
Sbjct: 1  MGDDGRVRWATIANDKDVQRWSVAFEVVEFVRILSAAFGGIRSCSMVYERFRRG 54

The following BLAST results are available for this feature:
BLAST of CSPI01G34120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G34120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYH5_CUCSA7.6e-2398.15Uncharacterized protein OS=Cucumis sativus GN=Csa_1G700650 PE=4 SV=1[more]
BLAST of CSPI01G34120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G34120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211742|gb|KGN66838.1|1.1e-2298.15hypothetical protein Csa_1G700650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G34120.1CSPI01G34120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G34120Csa1G700650Cucumber (Chinese Long) v2cpicuB001
CSPI01G34120CsaV3_1G046010Cucumber (Chinese Long) v3cpicucB000
CSPI01G34120CsGy1G032620Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G34120Cucurbita moschata (Rifu)cmocpiB196
CSPI01G34120Cucurbita moschata (Rifu)cmocpiB390
CSPI01G34120Melon (DHL92) v3.5.1cpimeB013
CSPI01G34120Watermelon (Charleston Gray)cpiwcgB026
CSPI01G34120Watermelon (97103) v1cpiwmB045
CSPI01G34120Watermelon (97103) v1cpiwmB053
CSPI01G34120Cucurbita pepo (Zucchini)cpecpiB520
CSPI01G34120Cucurbita pepo (Zucchini)cpecpiB532
CSPI01G34120Bottle gourd (USVL1VR-Ls)cpilsiB034
CSPI01G34120Melon (DHL92) v3.6.1cpimedB013
CSPI01G34120Melon (DHL92) v3.6.1cpimedB022
CSPI01G34120Silver-seed gourdcarcpiB0126
CSPI01G34120Silver-seed gourdcarcpiB0256
CSPI01G34120Watermelon (97103) v2cpiwmbB011
CSPI01G34120Wax gourdcpiwgoB031
CSPI01G34120Cucumber (Gy14) v1cgycpiB496
CSPI01G34120Cucurbita maxima (Rimu)cmacpiB209
CSPI01G34120Cucurbita maxima (Rimu)cmacpiB404