CSPI01G34000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G34000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 28942352 .. 28942879 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTTAGACTTATCATCGTGCAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

mRNA sequence

ATGCGGTTTAGACTTATCATCGTGCAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

Coding sequence (CDS)

ATGCGGTTTAGACTTATCATCGTGCAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

Homology

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BLAST of CSPI01G34000 vs. TrEMBL
Match: A0A0A0LY75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699050 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.7e-88
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60
           MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG
Sbjct: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60

Query: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120
           VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK
Sbjct: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120

Query: 121 FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 176
           FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS
Sbjct: 121 FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 175

[Close]

BLAST of CSPI01G34000 vs. NCBI nr
Match: gi|700211729|gb|KGN66825.1| (hypothetical protein Csa_1G699050 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 8.1e-88
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60
           MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG
Sbjct: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60

Query: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120
           VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK
Sbjct: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120

Query: 121 FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 176
           FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS
Sbjct: 121 FKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 175

The following BLAST results are available for this feature:

BLAST of CSPI01G34000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G34000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY75_CUCSA	5.7e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699050 PE=4 SV=1	[more]

BLAST of CSPI01G34000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G34000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211729\|gb\|KGN66825.1\|	8.1e-88	100.00	hypothetical protein Csa_1G699050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G34000.1	CSPI01G34000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G34000	Csa1G699050	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G34000	CsaV3_1G045870	Cucumber (Chinese Long) v3	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G34000	Cucumber (Gy14) v1	cgycpiB496
CSPI01G34000	Cucurbita maxima (Rimu)	cmacpiB209
CSPI01G34000	Cucurbita maxima (Rimu)	cmacpiB400
CSPI01G34000	Cucurbita moschata (Rifu)	cmocpiB196
CSPI01G34000	Cucurbita moschata (Rifu)	cmocpiB390
CSPI01G34000	Melon (DHL92) v3.5.1	cpimeB013
CSPI01G34000	Watermelon (Charleston Gray)	cpiwcgB026
CSPI01G34000	Watermelon (97103) v1	cpiwmB045
CSPI01G34000	Cucurbita pepo (Zucchini)	cpecpiB520
CSPI01G34000	Cucurbita pepo (Zucchini)	cpecpiB532
CSPI01G34000	Bottle gourd (USVL1VR-Ls)	cpilsiB034
CSPI01G34000	Melon (DHL92) v3.6.1	cpimedB013
CSPI01G34000	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G34000	Silver-seed gourd	carcpiB0256
CSPI01G34000	Watermelon (97103) v2	cpiwmbB011
CSPI01G34000	Wax gourd	cpiwgoB066