CSPI01G33740 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G33740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCalmodulin-binding transcription activator
LocationChr1 : 28692907 .. 28693110 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTGAAGTTGAGGTTTCTACAGAAGTTTTGACAAACAATGTACTTGGATGTCGAACTCCTCCTTTCCATGCTCCAGGGCGTATTCCCTTCTATGTGACACGCTACAATAGGCTAGCCTGCAGTGAGGTTAGAGAGTTTGAATATCGTGAGAAGCCACCAACCCTTTCAGTATCTAATGCCCCCAAGTGTGCACCATAA

mRNA sequence

ATGTTTGGTGAAGTTGAGGTTTCTACAGAAGTTTTGACAAACAATGTACTTGGATGTCGAACTCCTCCTTTCCATGCTCCAGGGCGTATTCCCTTCTATGTGACACGCTACAATAGGCTAGCCTGCAGTGAGGTTAGAGAGTTTGAATATCGTGAGAAGCCACCAACCCTTTCAGTATCTAATGCCCCCAAGTGTGCACCATAA

Coding sequence (CDS)

ATGTTTGGTGAAGTTGAGGTTTCTACAGAAGTTTTGACAAACAATGTACTTGGATGTCGAACTCCTCCTTTCCATGCTCCAGGGCGTATTCCCTTCTATGTGACACGCTACAATAGGCTAGCCTGCAGTGAGGTTAGAGAGTTTGAATATCGTGAGAAGCCACCAACCCTTTCAGTATCTAATGCCCCCAAGTGTGCACCATAA
Homology
[Close]
BLAST of CSPI01G33740 vs. Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYR 52
           MFG+ EV  +V++N +L C   P H  GR+PFYVT  NRLACSEVREFEY+
Sbjct: 502 MFGQTEVPADVISNGILQC-VAPMHEAGRVPFYVTCSNRLACSEVREFEYK 551

[Close]
BLAST of CSPI01G33740 vs. Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-11
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEY 51
           MFGEVEV  E+L + VL C  PP H  G +PFYVT  NR ACSEVREF++
Sbjct: 450 MFGEVEVPAEILVDGVLCCHAPP-HTAGHVPFYVTCSNRFACSEVREFDF 498

[Close]
BLAST of CSPI01G33740 vs. Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEY 51
           MFGEVEV  ++L + VL C  PP H  GR+PFY+T  +R +CSEVREF++
Sbjct: 499 MFGEVEVPADILVDGVLCCHAPP-HEVGRVPFYITCSDRFSCSEVREFDF 547

[Close]
BLAST of CSPI01G33740 vs. Swiss-Prot
Match: CMTA4_ARATH (Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFG  +V  E++   V+ C  P    PG++   +T  + L CSE+REFEYREKP T    
Sbjct: 482 MFGNAQVPFEIIKEGVIRCEAPQC-GPGKVNLCITSGDGLLCSEIREFEYREKPDTC--- 541

Query: 61  NAPKCA 67
             PKC+
Sbjct: 542 -CPKCS 542

[Close]
BLAST of CSPI01G33740 vs. TrEMBL
Match: A0A0A0KXF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304810 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-25
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEV  EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEY EKP TLS+ 
Sbjct: 413 MFGEVEVPAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYLEKPSTLSLP 472

Query: 61  NAPKCAP 68
           NAPKCAP
Sbjct: 473 NAPKCAP 479

[Close]
BLAST of CSPI01G33740 vs. TrEMBL
Match: D7T677_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00630 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-18
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGE+EVS EVLTNNV+ C  P  HAPGR+PFYVT  NRLACSEVREFEYREKP  ++ S
Sbjct: 484 MFGEIEVSAEVLTNNVIRCHAP-LHAPGRVPFYVTCSNRLACSEVREFEYREKPSRVAFS 543

Query: 61  NAPKCAP 68
            A +  P
Sbjct: 544 MAVRSTP 549

[Close]
BLAST of CSPI01G33740 vs. TrEMBL
Match: A0A0D2UVU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-18
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGE+EVS EVLT NV+ C+ P  H PGR+PFY+T  NRLACSEVREFEYREKPP  S  
Sbjct: 480 MFGEIEVSAEVLTKNVIRCQVPS-HVPGRVPFYITCSNRLACSEVREFEYREKPPGFSFF 539

Query: 61  NAPKC 66
            A KC
Sbjct: 540 TAVKC 543

[Close]
BLAST of CSPI01G33740 vs. TrEMBL
Match: A0A0D2UW74_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-18
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGE+EVS EVLT NV+ C+ P  H PGR+PFY+T  NRLACSEVREFEYREKPP  S  
Sbjct: 477 MFGEIEVSAEVLTKNVIRCQVPS-HVPGRVPFYITCSNRLACSEVREFEYREKPPGFSFF 536

Query: 61  NAPKC 66
            A KC
Sbjct: 537 TAVKC 540

[Close]
BLAST of CSPI01G33740 vs. TrEMBL
Match: A0A0D2UVU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-18
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGE+EVS EVLT NV+ C+ P  H PGR+PFY+T  NRLACSEVREFEYREKPP  S  
Sbjct: 480 MFGEIEVSAEVLTKNVIRCQVPS-HVPGRVPFYITCSNRLACSEVREFEYREKPPGFSFF 539

Query: 61  NAPKC 66
            A KC
Sbjct: 540 TAVKC 543

[Close]
BLAST of CSPI01G33740 vs. TAIR10
Match: AT2G22300.1 (AT2G22300.1 signal responsive 1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-13
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYR 52
           MFG+ EV  +V++N +L C   P H  GR+PFYVT  NRLACSEVREFEY+
Sbjct: 502 MFGQTEVPADVISNGILQC-VAPMHEAGRVPFYVTCSNRLACSEVREFEYK 551

[Close]
BLAST of CSPI01G33740 vs. TAIR10
Match: AT5G09410.3 (AT5G09410.3 ethylene induced calmodulin binding protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEY 51
           MFGEVEV  E+L + VL C  PP H  G +PFYVT  NR ACSEVREF++
Sbjct: 509 MFGEVEVPAEILVDGVLCCHAPP-HTAGHVPFYVTCSNRFACSEVREFDF 557

[Close]
BLAST of CSPI01G33740 vs. TAIR10
Match: AT5G64220.1 (AT5G64220.1 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-11
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEY 51
           MFGEVEV  ++L + VL C  PP H  GR+PFY+T  +R +CSEVREF++
Sbjct: 499 MFGEVEVPADILVDGVLCCHAPP-HEVGRVPFYITCSDRFSCSEVREFDF 547

[Close]
BLAST of CSPI01G33740 vs. TAIR10
Match: AT1G67310.1 (AT1G67310.1 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains)

HSP 1 Score: 59.7 bits (143), Expect = 8.1e-10
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFG  +V  E++   V+ C  P    PG++   +T  + L CSE+REFEYREKP T    
Sbjct: 482 MFGNAQVPFEIIKEGVIRCEAPQC-GPGKVNLCITSGDGLLCSEIREFEYREKPDTC--- 541

Query: 61  NAPKCA 67
             PKC+
Sbjct: 542 -CPKCS 542

[Close]
BLAST of CSPI01G33740 vs. NCBI nr
Match: gi|659069234|ref|XP_008448822.1| (PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 60/67 (89.55%), Postives = 60/67 (89.55%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEVS EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEYREKPPTLSV 
Sbjct: 441 MFGEVEVSAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYREKPPTLSVP 500

Query: 61  NAPKCAP 68
           NA KCAP
Sbjct: 501 NATKCAP 507

[Close]
BLAST of CSPI01G33740 vs. NCBI nr
Match: gi|659069236|ref|XP_008448831.1| (PREDICTED: calmodulin-binding transcription activator 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 60/67 (89.55%), Postives = 60/67 (89.55%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEVS EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEYREKPPTLSV 
Sbjct: 417 MFGEVEVSAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYREKPPTLSVP 476

Query: 61  NAPKCAP 68
           NA KCAP
Sbjct: 477 NATKCAP 483

[Close]
BLAST of CSPI01G33740 vs. NCBI nr
Match: gi|659069238|ref|XP_008448838.1| (PREDICTED: calmodulin-binding transcription activator 3-like isoform X4 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 60/67 (89.55%), Postives = 60/67 (89.55%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEVS EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEYREKPPTLSV 
Sbjct: 326 MFGEVEVSAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYREKPPTLSVP 385

Query: 61  NAPKCAP 68
           NA KCAP
Sbjct: 386 NATKCAP 392

[Close]
BLAST of CSPI01G33740 vs. NCBI nr
Match: gi|659069232|ref|XP_008448813.1| (PREDICTED: calmodulin-binding transcription activator 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 60/67 (89.55%), Postives = 60/67 (89.55%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEVS EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEYREKPPTLSV 
Sbjct: 444 MFGEVEVSAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYREKPPTLSVP 503

Query: 61  NAPKCAP 68
           NA KCAP
Sbjct: 504 NATKCAP 510

[Close]
BLAST of CSPI01G33740 vs. NCBI nr
Match: gi|778693657|ref|XP_011653672.1| (PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 1   MFGEVEVSTEVLTNNVLGCRTPPFHAPGRIPFYVTRYNRLACSEVREFEYREKPPTLSVS 60
           MFGEVEV  EVLTNNVL CRTPP HAPGRIPFYVT  NRLACSEVREFEY EKP TLS+ 
Sbjct: 295 MFGEVEVPAEVLTNNVLRCRTPPLHAPGRIPFYVTCCNRLACSEVREFEYLEKPSTLSLP 354

Query: 61  NAPKCAP 68
           NAPKCAP
Sbjct: 355 NAPKCAP 361

The following BLAST results are available for this feature:
BLAST of CSPI01G33740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CMTA3_ARATH6.2e-1260.78Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE... [more]
CMTA1_ARATH1.8e-1162.00Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE... [more]
CMTA2_ARATH2.0e-1056.00Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE... [more]
CMTA4_ARATH1.4e-0842.42Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE... [more]
BLAST of CSPI01G33740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXF3_CUCSA1.5e-2585.07Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304810 PE=4 SV=1[more]
D7T677_VITVI4.1e-1868.66Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00630 PE=4 SV=... [more]
A0A0D2UVU6_GOSRA4.1e-1869.23Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1[more]
A0A0D2UW74_GOSRA4.1e-1869.23Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1[more]
A0A0D2UVU1_GOSRA4.1e-1869.23Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204700 PE=4 SV=1[more]
BLAST of CSPI01G33740 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22300.13.5e-1360.78 signal responsive 1[more]
AT5G09410.31.0e-1262.00 ethylene induced calmodulin binding protein[more]
AT5G64220.11.1e-1156.00 Calmodulin-binding transcription activator protein with CG-1 and Ank... [more]
AT1G67310.18.1e-1042.42 Calmodulin-binding transcription activator protein with CG-1 and Ank... [more]
BLAST of CSPI01G33740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069234|ref|XP_008448822.1|4.0e-2789.55PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 [Cucumis... [more]
gi|659069236|ref|XP_008448831.1|4.0e-2789.55PREDICTED: calmodulin-binding transcription activator 3-like isoform X3 [Cucumis... [more]
gi|659069238|ref|XP_008448838.1|4.0e-2789.55PREDICTED: calmodulin-binding transcription activator 3-like isoform X4 [Cucumis... [more]
gi|659069232|ref|XP_008448813.1|4.0e-2789.55PREDICTED: calmodulin-binding transcription activator 3-like isoform X1 [Cucumis... [more]
gi|778693657|ref|XP_011653672.1|2.2e-2585.07PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 [Cucumis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR014756Ig_E-set
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33740.1CSPI01G33740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 1..52
score: 2.
IPR014756Immunoglobulin E-setunknownSSF81296E set domainscoord: 1..51
score: 2.3
NoneNo IPR availablePANTHERPTHR23335CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTAcoord: 1..62
score: 3.2
NoneNo IPR availablePANTHERPTHR23335:SF10SUBFAMILY NOT NAMEDcoord: 1..62
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G33740Cucurbita moschata (Rifu)cmocpiB083
CSPI01G33740Cucumber (Chinese Long) v2cpicuB001
CSPI01G33740Melon (DHL92) v3.5.1cpimeB045
CSPI01G33740Watermelon (Charleston Gray)cpiwcgB078
CSPI01G33740Watermelon (Charleston Gray)cpiwcgB087
CSPI01G33740Cucurbita pepo (Zucchini)cpecpiB644
CSPI01G33740Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G33740Bottle gourd (USVL1VR-Ls)cpilsiB079
CSPI01G33740Melon (DHL92) v3.6.1cpimedB039
CSPI01G33740Cucumber (Gy14) v2cgybcpiB002
CSPI01G33740Silver-seed gourdcarcpiB0948
CSPI01G33740Cucumber (Chinese Long) v3cpicucB000
CSPI01G33740Watermelon (97103) v2cpiwmbB076
CSPI01G33740Watermelon (97103) v2cpiwmbB083
CSPI01G33740Wax gourdcpiwgoB094
CSPI01G33740Wax gourdcpiwgoB112
CSPI01G33740Watermelon (97103) v1cpiwmB093
CSPI01G33740Cucurbita maxima (Rimu)cmacpiB090