CSPI01G33680 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33680
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pseudouridine synthase family protein
Location	Chr1 : 28635332 .. 28637665 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGGATTTCCATAGGGAATTTTCGATTACCAGTATGACTGGGAGCTATCGGAGAGTTTTTCAAAGACCAAAGGACTACGAGTGGTACTTTCTGTTAAGTTCAAATTATTTATTCCTAGCATTTATGTATCCACTAGAAGATTGAATTCTGTTGTTTGGCAGGGAATTGATCTCATATGTTGATCGTAATTTACCTCTGGCACAGAGTGATTTACATAACCTTTTGAAGTCTCAAAGTGTTGAAATTAGCAAGGAAGAAAAGATAGCCAATAAATCTAAAAATGAAGATTCATTGGATTCCACTGATCAATCAGTGTGCTGTAAAAAGAATATTCAACTTGAAGCAGGGGGAAAGGAGAATGAAAATGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGCTGAGCTTTACTCTCCCGGCATCTTCTTATGCTACGATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCACTTTTTCTCTTTTTCATTACTAGATAATAATTATTGTCTCGTTCAAATGTAAGATTTTGGTTGAAGTAGATTTCTGCAAACTTTCTCTAAACCTTTACTGTAGAGTATATGCAATCTGAATGTCGTGTTATTGTTTGTTATTGTTTTACTTTAGAAGTCTTGGAGTTATTGTTTGTTTGTTATTTCAGGTTGCTTTCCACAAAACTTTAAACTAGGGATTAGCTTTGCCATACATGGAGACTGATGGGAATTCAGAGAAGTTCAGTAGGAGCATGAAGGTAAAACAAACTTCCTACTTACTTCGGAAGTTGATTGCTTTTATGTGGGTGGTAAAATAATGAAAAATACAGAATGTGATTCTAAGTTTCTTTTGTACATTGCAAATGTTGCTTGTTGGTTGTTTAGCCTTTAAAAATAGGTGGGTGAGTCAATTTTAACCTTAAACTTTCAATTTCATCAATTTAAACTGAAGACGTATGGTTACTTTTGAAAGCAAGTGAGCAAAATAAAGAAATAAATCACACAAAATTCATTAACAAATTGATCAAATAAAAAATTCTCATACTTATCAATAAAATATCCAAATCCAACTGGCTAAAAACATCCAACATAAGTAAAACTAATACCAGCAAAAAAGTCTTACTCAATGATAAGAATGCCTGTCGTTCTATCCATAGGAGCACAGATGTAGATACAAATATAGACACAGCGTGGACAGACTGACGTAACATTTAAAAAAATTTAGGGCACGTCTGTGATTATTACATACATTTTTTAAAATGTGTACATTTTTAAACAAGGAAATTTGAAGTCAATTTATTTATGCATTTATAATCTTAAATAGTTCGTTTTATGTATTTCCTTCTCAAATTTTATTATTATGTGGTGCCTATTTAGTATGTAATAAGTGCTCGATACACATCTAAGGGATGTTGGTCCTATTGTGACTTTGTACAACTAGTGTCTAGTGACTTTGTACAACTAGTGTCTAGCACATTTATTGTACTAACAAGTGTCTAAAACTAGGAACTTGACCAATTTTTTTAGCACATCTTATGTAGTTCAAATAATCAATGATTTTCACGAAAAGGCTGTGCGAATATACAATCAATCAGCAAGTGGTAAGTATTTTTATCATCATCTACTATTAATGAAAGAAATCTACCACCCTACACTCATTTGTTTAGTGAGTTCTTAAGAAACAGTCTTGATTTGGTTCAATTTTGTTGTCAGTTCTCCAGATTTTTTTCTTATTTTTATTCTGTGCGCAAACGTGGGCACCCCTAGCCCTCACTCACTCCTACCTTGTGTTATTGTCTTTCGAAGTTGTAGATACATGATAGATGAACCAGGTTTTGCATTTGCAAAGCTTGGTAAGTATTTTTATAATTATCTACCATTAATTAAAGAAATCTACTACCCTAAACTCGTTTGTTTGGTGAATTCTTAAGAAACAGTCTTTGATTTGGTTCAGTTCCAGTTCTCCAGGCTATTTTCGTATTCTTTTCTGTGTACAGGGACATGTGCACCCCTGGCCCTCACTAACTTTTGCCTTGTGATATTGCATTTTGAGGTTTTAGATACATGATAGAAGAACCAAGAGTTGCATATGCAAAGCTTAGTGCCCGCATGGGTCAATGTAGTTGCATTGCGTTGAATGCAGGCTTTATCATTACCTATTTTCTGGTGGTTATTTTCTTGAATAATTTGAATATTTTCTATAATCCTGCCCGTTTGTCTGTTTGCAGAGAGAACCTGGGGACAAGGGGCACTTCGGAGAACACGAAAATCTTTCTAGTGAGCCAATCTGCTGTTTCAGTTTGGACCAATTCCGTTTGAGGTAG

mRNA sequence

ATGGAACCGGATTTCCATAGGGAATTTTCGATTACCAGTATGACTGGGAGCTATCGGAGAGTTTTTCAAAGACCAAAGGACTACGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCTCTGGCACAGAGTGATTTACATAACCTTTTGAAGTCTCAAAGTGTTGAAATTAGCAAGGAAGAAAAGATAGCCAATAAATCTAAAAATGAAGATTCATTGGATTCCACTGATCAATCAGTGTGCTGTAAAAAGAATATTCAACTTGAAGCAGGGGGAAAGGAGAATGAAAATGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGCTGAGCTTTACTCTCCCGGCATCTTCTTATGCTACGATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGGATTAGCTTTGCCATACATGGAGACTGATGGGAATTCAGAGAAGTTCAGTAGGAGCATGAAGAGAGAACCTGGGGACAAGGGGCACTTCGGAGAACACGAAAATCTTTCTAGTGAGCCAATCTGCTGTTTCAGTTTGGACCAATTCCGTTTGAGGTAG

Coding sequence (CDS)

ATGGAACCGGATTTCCATAGGGAATTTTCGATTACCAGTATGACTGGGAGCTATCGGAGAGTTTTTCAAAGACCAAAGGACTACGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCTCTGGCACAGAGTGATTTACATAACCTTTTGAAGTCTCAAAGTGTTGAAATTAGCAAGGAAGAAAAGATAGCCAATAAATCTAAAAATGAAGATTCATTGGATTCCACTGATCAATCAGTGTGCTGTAAAAAGAATATTCAACTTGAAGCAGGGGGAAAGGAGAATGAAAATGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGCTGAGCTTTACTCTCCCGGCATCTTCTTATGCTACGATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGGATTAGCTTTGCCATACATGGAGACTGATGGGAATTCAGAGAAGTTCAGTAGGAGCATGAAGAGAGAACCTGGGGACAAGGGGCACTTCGGAGAACACGAAAATCTTTCTAGTGAGCCAATCTGCTGTTTCAGTTTGGACCAATTCCGTTTGAGGTAG

Homology

[Close]

BLAST of CSPI01G33680 vs. TrEMBL
Match: A0A0A0LYD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690350 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-78
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+
Sbjct: 27  KEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAD 86

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 126
           KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR
Sbjct: 87  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 146

Query: 127 ELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG 163
           ELLKTSTSGLALPYMETDGNSEKFSRS+KREPGDKG
Sbjct: 147 ELLKTSTSGLALPYMETDGNSEKFSRSIKREPGDKG 182

[Close]

BLAST of CSPI01G33680 vs. TrEMBL
Match: W9QVC1_9ROSA (Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/137 (51.82%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKI-- 66
           +EFSITSMTGSYRRVFQ+P DYEWEL++Y +  +PLA++DL  + KS+   +++E ++  
Sbjct: 604 KEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSKPAHVAEENEVNG 663

Query: 67  -------ANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPA 126
                  + + +NE  L + D  V  ++  +L+A   E+  G  +Q+PQMALKLSFTLPA
Sbjct: 664 NEESTKRSKRVENEAVLQTDDNKVDGEREAELQA---ESTCGTNSQEPQMALKLSFTLPA 723

Query: 127 SSYATMAIRELLKTSTS 135
           S YATMAIRELLKTSTS
Sbjct: 724 SCYATMAIRELLKTSTS 737

[Close]

BLAST of CSPI01G33680 vs. TrEMBL
Match: U5GGM8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05300g PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 72/137 (52.55%), Postives = 90/137 (65.69%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQ+P D+EWEL++Y D N PLA++DL  + K+ S  I K+E+   
Sbjct: 607 KEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKTGSTNIIKQEEQGK 666

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENE---------NGQGTQDPQMALKLSFTLPA 126
             ++ D  D T   VC + +I L +   E           +G   Q+ QMALKLS TLPA
Sbjct: 667 GDEDNDLSDCTKLPVCSRNSIALSSDTNEESEREVESEQVSGSNWQETQMALKLSLTLPA 726

Query: 127 SSYATMAIRELLKTSTS 135
           S YATMAIRELLKTSTS
Sbjct: 727 SCYATMAIRELLKTSTS 743

[Close]

BLAST of CSPI01G33680 vs. TrEMBL
Match: A0A067DBE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009530mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.2e-25
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTG+YRRVFQ+P D+EWEL++Y+D N PLA++DL  + K++ V I KEE+   
Sbjct: 384 KEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVC 443

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGK-------------ENENGQGTQDPQMALKLSF 126
            +K +D  D   QS    K+I+L                  E+  G  +Q  QMALKL  
Sbjct: 444 GNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGL 503

Query: 127 TLPASSYATMAIRELLKTSTS 135
           TLP+S YATMAIRELLKTSTS
Sbjct: 504 TLPSSCYATMAIRELLKTSTS 524

[Close]

BLAST of CSPI01G33680 vs. TrEMBL
Match: V4V316_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003382mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 70/141 (49.65%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTG+YRRVFQ+P D+EWEL++Y+D N PLA++DL  + K +   I KEE+   
Sbjct: 546 KEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVKEEEAVC 605

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGK-------------ENENGQGTQDPQMALKLSF 126
            +K +D  D   QS    K+I+L                  E+  G  +Q  QMALKL  
Sbjct: 606 GNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGL 665

Query: 127 TLPASSYATMAIRELLKTSTS 135
           TLP+S YATMAIRELLKTSTS
Sbjct: 666 TLPSSCYATMAIRELLKTSTS 686

[Close]

BLAST of CSPI01G33680 vs. TAIR10
Match: AT3G04820.1 (AT3G04820.1 Pseudouridine synthase family protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-24
Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVE-ISKEEKIA 66
           +EFSITSMTG YRRVFQ+P D+EWEL++Y D N PLA++DL  +  ++ VE +   E+I 
Sbjct: 580 KEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIPMNKPVEKVGSTEEIE 639

Query: 67  NKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQD---PQMALKLSFTLPASSYAT 126
           ++S   D    T+     + N++ +    E E   G  D    QMALK++ TLP+S YAT
Sbjct: 640 DESMKSD----TNPHDSGETNLKDQTDSNEAEKDTGNPDSEQTQMALKMALTLPSSCYAT 699

Query: 127 MAIRELLKTSTS 135
           MAIRELLKTSTS
Sbjct: 700 MAIRELLKTSTS 707

[Close]

BLAST of CSPI01G33680 vs. NCBI nr
Match: gi|700211702|gb|KGN66798.1| (hypothetical protein Csa_1G690350 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 4.7e-78
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+
Sbjct: 27  KEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAD 86

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 126
           KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR
Sbjct: 87  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 146

Query: 127 ELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG 163
           ELLKTSTSGLALPYMETDGNSEKFSRS+KREPGDKG
Sbjct: 147 ELLKTSTSGLALPYMETDGNSEKFSRSIKREPGDKG 182

[Close]

BLAST of CSPI01G33680 vs. NCBI nr
Match: gi|778664378|ref|XP_011660284.1| (PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+
Sbjct: 583 KEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAD 642

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 126
           KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR
Sbjct: 643 KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 702

Query: 127 ELLKTSTS 135
           ELLKTSTS
Sbjct: 703 ELLKTSTS 710

[Close]

BLAST of CSPI01G33680 vs. NCBI nr
Match: gi|659125508|ref|XP_008462718.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSVEISKEEKIAN
Sbjct: 553 KEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHKLLKSQSVEISKEEKIAN 612

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 126
           KSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQMALKLSFTLPASSYATMAIR
Sbjct: 613 KSKIEDSLDSTDQSVCCKKDIQLEAGGNETEYGQGTPDPQMALKLSFTLPASSYATMAIR 672

Query: 127 ELLKTSTS 135
           ELLKTSTS
Sbjct: 673 ELLKTSTS 680

[Close]

BLAST of CSPI01G33680 vs. NCBI nr
Match: gi|659125504|ref|XP_008462716.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIAN 66
           +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSVEISKEEKIAN
Sbjct: 583 KEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHKLLKSQSVEISKEEKIAN 642

Query: 67  KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATMAIR 126
           KSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQMALKLSFTLPASSYATMAIR
Sbjct: 643 KSKIEDSLDSTDQSVCCKKDIQLEAGGNETEYGQGTPDPQMALKLSFTLPASSYATMAIR 702

Query: 127 ELLKTSTS 135
           ELLKTSTS
Sbjct: 703 ELLKTSTS 710

[Close]

BLAST of CSPI01G33680 vs. NCBI nr
Match: gi|703076110|ref|XP_010090257.1| (Multisubstrate pseudouridine synthase 7 [Morus notabilis])

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 71/137 (51.82%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 7   REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKI-- 66
           +EFSITSMTGSYRRVFQ+P DYEWEL++Y +  +PLA++DL  + KS+   +++E ++  
Sbjct: 604 KEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSKPAHVAEENEVNG 663

Query: 67  -------ANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPA 126
                  + + +NE  L + D  V  ++  +L+A   E+  G  +Q+PQMALKLSFTLPA
Sbjct: 664 NEESTKRSKRVENEAVLQTDDNKVDGEREAELQA---ESTCGTNSQEPQMALKLSFTLPA 723

Query: 127 SSYATMAIRELLKTSTS 135
           S YATMAIRELLKTSTS
Sbjct: 724 SCYATMAIRELLKTSTS 737

The following BLAST results are available for this feature:

BLAST of CSPI01G33680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYD2_CUCSA	3.3e-78	98.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690350 PE=4 SV=1	[more]
W9QVC1_9ROSA	1.3e-26	51.82	Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 S...	[more]
U5GGM8_POPTR	2.2e-26	52.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05300g PE=4 SV=1	[more]
A0A067DBE6_CITSI	3.2e-25	50.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009530mg PE=4 SV=1	[more]
V4V316_9ROSI	1.2e-24	49.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003382mg PE=4 SV=1	[more]

BLAST of CSPI01G33680 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04820.1	1.9e-24	49.24	Pseudouridine synthase family protein	[more]

BLAST of CSPI01G33680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211702\|gb\|KGN66798.1\|	4.7e-78	98.08	hypothetical protein Csa_1G690350 [Cucumis sativus]	[more]
gi\|778664378\|ref\|XP_011660284.1\|	1.1e-61	98.44	PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus]	[more]
gi\|659125508\|ref\|XP_008462718.1\|	4.6e-57	93.75	PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo]	[more]
gi\|659125504\|ref\|XP_008462716.1\|	4.6e-57	93.75	PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo]	[more]
gi\|703076110\|ref\|XP_010090257.1\|	1.9e-26	51.82	Multisubstrate pseudouridine synthase 7 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001656	PsdUridine_synth_TruD
IPR020103	PsdUridine_synth_cat_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0009982	pseudouridine synthase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33680.1	CSPI01G33680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001656	Pseudouridine synthase, TruD	PANTHER	PTHR13326	TRNA PSEUDOURIDINE SYNTHASE D	coord: 8..77 score: 1.8E-29coord: 103..134 score: 1.8
IPR020103	Pseudouridine synthase, catalytic domain	unknown	SSF55120	Pseudouridine synthase	coord: 9..36 score: 4.32E-11coord: 108..131 score: 4.32
None	No IPR available	PANTHER	PTHR13326:SF8	SUBFAMILY NOT NAMED	coord: 8..77 score: 1.8E-29coord: 103..134 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G33680	Csa1G690350	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33680	CsaV3_1G045610	Cucumber (Chinese Long) v3	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33680	Silver-seed gourd	carcpiB0948
CSPI01G33680	Watermelon (97103) v2	cpiwmbB076
CSPI01G33680	Watermelon (97103) v2	cpiwmbB083
CSPI01G33680	Wax gourd	cpiwgoB112
CSPI01G33680	Watermelon (97103) v1	cpiwmB093
CSPI01G33680	Cucumber (Gy14) v1	cgycpiB440
CSPI01G33680	Cucurbita maxima (Rimu)	cmacpiB069
CSPI01G33680	Cucurbita maxima (Rimu)	cmacpiB090
CSPI01G33680	Cucurbita moschata (Rifu)	cmocpiB063
CSPI01G33680	Cucurbita moschata (Rifu)	cmocpiB083
CSPI01G33680	Melon (DHL92) v3.5.1	cpimeB045
CSPI01G33680	Watermelon (Charleston Gray)	cpiwcgB078
CSPI01G33680	Watermelon (Charleston Gray)	cpiwcgB087
CSPI01G33680	Cucurbita pepo (Zucchini)	cpecpiB644
CSPI01G33680	Cucurbita pepo (Zucchini)	cpecpiB703
CSPI01G33680	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33680	Bottle gourd (USVL1VR-Ls)	cpilsiB079
CSPI01G33680	Silver-seed gourd	carcpiB0016
CSPI01G33680	Melon (DHL92) v3.6.1	cpimedB039
CSPI01G33680	Cucumber (Gy14) v2	cgybcpiB002