CSPI01G33290 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33290
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 28165887 .. 28166528 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAATCTATTAAAGATTTTACTAAAAATCTTATTCACTCCTCGGTTTTTGCTATATTTTCTGCCGCCATCACCAAATTTATCATTCCCACGGACACTAAAATTGAGAAGAAATTTGGGCCTAAAAAAGTGTGGGATTCATTTGGGCTGAAGTTATTTATACCTTTCACTGCAACTACTAGGGTTAGCCTTCAAATCTGAAGAAAGAGTTAAGGAAACGGAAAAAGGAAATCAATTTTCCCCTTCCCACGCCCTCTCTCTCTCACGCAGCCCACGCCACAGTTTCCACCCAGCAGTCGCCGGCCAGCTTCCGGCAAACCACGCTGCCAGTAACCTGCTCCTCCTTCTCTTATCTTTGACTCTCTTCATAGCCAACAGCAGCAAGAACTCAGCGCCGCTCTGCTGACCATCGTTCCGTCATCCGTGACACTCCGACGACTAGTCGCTCGCCACTCCAACTTCCGGCCTCGGTCGCTCAGGCCATCTGTGGGCTTTCTTAGGGTGATTTTTTCTTACATTTGGCGCTGGAATTTTTCGTTACCCATTATATTTCTGGCCCCGTAACTGATTGCCCACTATGTGTTGTCCAGTTGTTTTAGTATTGAGTTTTATTTGGTGAATTTTTGGTGAGAAATGCGG

mRNA sequence

ATGGGAAAATCTATTAAAGATTTTACTAAAAATCTTATTCACTCCTCGGTTTTTGCTATATTTTCTGCCGCCATCACCAAATTTATCATTCCCACGGACACTAAAATTGAGAAGAAATTTGGGCCTAAAAAAGTGTGGGATTCATTTGGGCTGAAGTTATTTATACCTTTCACTGCAACTACTAGGCCCACGCCACAGTTTCCACCCAGCAGTCGCCGGCCAGCTTCCGGCAAACCACGCTGCCACCAACAGCAGCAAGAACTCAGCGCCGCTCTGCTGACCATCGTTCCGTCATCCGTGACACTCCGACGACTAGTCGCTCGCCACTCCAACTTCCGGCCTCGGTCGCTCAGGCCATCTGTGGGCTTTCTTAGGGTGATTTTTTCTTACATTTGGCGCTGGAATTTTTCGTTACCCATTATATTTCTGGCCCCGTAA

Coding sequence (CDS)

ATGGGAAAATCTATTAAAGATTTTACTAAAAATCTTATTCACTCCTCGGTTTTTGCTATATTTTCTGCCGCCATCACCAAATTTATCATTCCCACGGACACTAAAATTGAGAAGAAATTTGGGCCTAAAAAAGTGTGGGATTCATTTGGGCTGAAGTTATTTATACCTTTCACTGCAACTACTAGGCCCACGCCACAGTTTCCACCCAGCAGTCGCCGGCCAGCTTCCGGCAAACCACGCTGCCACCAACAGCAGCAAGAACTCAGCGCCGCTCTGCTGACCATCGTTCCGTCATCCGTGACACTCCGACGACTAGTCGCTCGCCACTCCAACTTCCGGCCTCGGTCGCTCAGGCCATCTGTGGGCTTTCTTAGGGTGATTTTTTCTTACATTTGGCGCTGGAATTTTTCGTTACCCATTATATTTCTGGCCCCGTAA

Homology

[Close]

BLAST of CSPI01G33290 vs. TrEMBL
Match: A0A0A0M0D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G679570 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.5e-75
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MGKSIKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT 60
           MGK IKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT
Sbjct: 1   MGKFIKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT 60

Query: 61  TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRSLRPS 120
           TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRS RPS
Sbjct: 61  TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRSFRPS 120

Query: 121 VGFLRVIFSYIWRWNFSLPIIFLAP 146
           VGFLRVIFSYIWRWNFSLPIIFLAP
Sbjct: 121 VGFLRVIFSYIWRWNFSLPIIFLAP 145

[Close]

BLAST of CSPI01G33290 vs. NCBI nr
Match: gi|700211663|gb|KGN66759.1| (hypothetical protein Csa_1G679570 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MGKSIKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT 60
           MGK IKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT
Sbjct: 1   MGKFIKDFTKNLIHSSVFAIFSAAITKFIIPTDTKIEKKFGPKKVWDSFGLKLFIPFTAT 60

Query: 61  TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRSLRPS 120
           TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRS RPS
Sbjct: 61  TRPTPQFPPSSRRPASGKPRCHQQQQELSAALLTIVPSSVTLRRLVARHSNFRPRSFRPS 120

Query: 121 VGFLRVIFSYIWRWNFSLPIIFLAP 146
           VGFLRVIFSYIWRWNFSLPIIFLAP
Sbjct: 121 VGFLRVIFSYIWRWNFSLPIIFLAP 145

The following BLAST results are available for this feature:

BLAST of CSPI01G33290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0D4_CUCSA	3.5e-75	98.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G679570 PE=4 SV=1	[more]

BLAST of CSPI01G33290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211663\|gb\|KGN66759.1\|	5.0e-75	98.62	hypothetical protein Csa_1G679570 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33290.1	CSPI01G33290.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G33290	Csa1G679570	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33290	CsaV3_1G045280	Cucumber (Chinese Long) v3	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33290	Cucumber (Gy14) v1	cgycpiB441
CSPI01G33290	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33290	Watermelon (Charleston Gray)	cpiwcgB087
CSPI01G33290	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33290	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33290	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G33290	Watermelon (97103) v2	cpiwmbB083