CSPI01G33220 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G33220
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 28102018 .. 28102561 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCTTTGGCACGAGGCTTGTGATAGCCGCGTAGATGTAATTGATCAACGATTTGTTATGCCTGTCAGAACACAAAGAAGCTTTCTTAATCAAACGCACTATCACATTTGTTTTTCGCTTTTAAGCTCGCAATCTCAGAGGCAAGCTGATTGTGTTGACCTTCATGATGATTGTCAATCTTAACTTCGAATCCAGAATCTGCTTCTCATGTCTTAAAGCGCGTTCTTGCAAATTTGTTTGGTTTTGGAAAATTTCTTTGAGTCCATCCATCATTGGTTTGCTTAATCGTATTGTTGATGAACTTGAAGTACTCATCATCATCGCTTTCTCTCGCCACGTTACTTTGTTGATCTTTTGTTTGTTTTAGCGGCGAGGGATCACATGTCTCACCTGCTTCCTCAAAGGAGATTTATTTACCTTTGAGGAGTGGTTCATCAACAGGCTCCTCCAAGACTTCTTCTCTTTGCAACCCAACAGGAACTAAGGTCGTGCTCTCTGGATCCTTGGTAATTTCTTCATTGATTAGAGGTTTATCGTAG

mRNA sequence

ATGGCAAGCTTTGGCACGAGGCTTGTGATAGCCGCCGGCGAGGGATCACATGTCTCACCTGCTTCCTCAAAGGAGATTTATTTACCTTTGAGGAGTGGTTCATCAACAGGCTCCTCCAAGACTTCTTCTCTTTGCAACCCAACAGGAACTAAGGTCGTGCTCTCTGGATCCTTGGTAATTTCTTCATTGATTAGAGGTTTATCGTAG

Coding sequence (CDS)

ATGGCAAGCTTTGGCACGAGGCTTGTGATAGCCGCCGGCGAGGGATCACATGTCTCACCTGCTTCCTCAAAGGAGATTTATTTACCTTTGAGGAGTGGTTCATCAACAGGCTCCTCCAAGACTTCTTCTCTTTGCAACCCAACAGGAACTAAGGTCGTGCTCTCTGGATCCTTGGTAATTTCTTCATTGATTAGAGGTTTATCGTAG
Homology
[Close]
BLAST of CSPI01G33220 vs. TrEMBL
Match: A0A0A0M0D0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G677540 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.2e-26
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MASFGTRLVIAAGEGSHVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI 60
          MASFGTRLVIAAGEG+HVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI
Sbjct: 1  MASFGTRLVIAAGEGAHVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI 60

Query: 61 SSLIRGLS 69
          SSLIRGLS
Sbjct: 61 SSLIRGLS 68

[Close]
BLAST of CSPI01G33220 vs. NCBI nr
Match: gi|700211658|gb|KGN66754.1| (hypothetical protein Csa_1G677540 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MASFGTRLVIAAGEGSHVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI 60
          MASFGTRLVIAAGEG+HVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI
Sbjct: 1  MASFGTRLVIAAGEGAHVSPASSKEIYLPLRSGSSTGSSKTSSLCNPTGTKVVLSGSLVI 60

Query: 61 SSLIRGLS 69
          SSLIRGLS
Sbjct: 61 SSLIRGLS 68

The following BLAST results are available for this feature:
BLAST of CSPI01G33220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G33220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0D0_CUCSA9.2e-2698.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G677540 PE=4 SV=1[more]
BLAST of CSPI01G33220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G33220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211658|gb|KGN66754.1|1.3e-2598.53hypothetical protein Csa_1G677540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33220.1CSPI01G33220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G33220Csa1G677540Cucumber (Chinese Long) v2cpicuB001
CSPI01G33220CsaV3_1G045220Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G33220Melon (DHL92) v3.5.1cpimeB044
CSPI01G33220Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G33220Melon (DHL92) v3.6.1cpimedB038
CSPI01G33220Cucumber (Gy14) v2cgybcpiB002
CSPI01G33220Cucumber (Gy14) v1cgycpiB584