CSPI01G33190 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33190
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, unclassified
Location	Chr1 : 28065503 .. 28066330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTATCACTTTGGAGTGTAAATTTCCAAGATTGGTTAGGATTGCAATCAATCCAAATGGGTCTGTTTCAGATCATTGTGACTCTTCAACCAATTCTTGGTCCATCTTGTTCAGAAGATTGCTAAATGTTGAGGAAATATTTTATTTCCAGACCTTGCTGAGTCAGATTTCTTCTTCACAGCCAGCCTCCTTTCCAGATCAAAGGTTTTGGTCCCTTAAAACCTCAGGCTTCTTCTCGGTAAAATCATTGGTTAAGCATCTTTCGACATTTTCTCCTTTGGAAAGTTCTTTGTACAAAAGGCTTTGGAAATCTAACAGCCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGGAAATTTAAACTGTGCCTCCGTACTTCAAAGAAAGCTTCCCTCTCATGCCCTCTCACCTCATGCCTGCCCCCTTTGTGTTTATAACATGGAAAGCATCCAGCACCTTTTATTTGATTGTGTCTTTGCTTCTAAAAGTTGGTTCCGCCTTCTCCAAGCATTCAATTTTTGTTGGGTTCTTGATCATGTTTTTAAGAACAATGTGTCTCAAATCCTTGCTGGTCCAAACTTGAAGAAGAAGACTGTTGAATGTTTGTGGGAAAATGCAGTAAAAGCTTTTTTAGCTGAAATCTGGTTTGAAAGAAACCAAAGAGTCTTCCATGATAAATCATCGACTTGGATGGAACGCTATGATTCTGCTCGTTTGAATGCATCTTCATGGTGCTCATTATCCAAATTTTTTCAGGATTATTCTTCGCAGGAGATTGTTTTAAATTGGCCAGCCTTTATAGCCTCCCCACCTTGA

mRNA sequence

ATGGACATTATCACTTTGGAGTGTAAATTTCCAAGATTGGTTAGGATTGCAATCAATCCAAATGGGTCTGTTTCAGATCATTGTGACTCTTCAACCAATTCTTGGTCCATCTTGTTCAGAAGATTGCTAAATGTTGAGGAAATATTTTATTTCCAGACCTTGCTGAGTCAGATTTCTTCTTCACAGCCAGCCTCCTTTCCAGATCAAAGGTTTTGGTCCCTTAAAACCTCAGGCTTCTTCTCGGTAAAATCATTGGTTAAGCATCTTTCGACATTTTCTCCTTTGGAAAGTTCTTTGTACAAAAGGCTTTGGAAATCTAACAGCCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGGAAATTTAAACTGTGCCTCCGTACTTCAAAGAAAGCTTCCCTCTCATGCCCTCTCACCTCATGCCTGCCCCCTTTGTGTTTATAACATGGAAAGCATCCAGCACCTTTTATTTGATTGTGTCTTTGCTTCTAAAAGTTGGTTCCGCCTTCTCCAAGCATTCAATTTTTGTTGGGTTCTTGATCATGTTTTTAAGAACAATGTGTCTCAAATCCTTGCTGGTCCAAACTTGAAGAAGAAGACTGTTGAATGTTTGTGGGAAAATGCAGTAAAAGCTTTTTTAGCTGAAATCTGGTTTGAAAGAAACCAAAGAGTCTTCCATGATAAATCATCGACTTGGATGGAACGCTATGATTCTGCTCGTTTGAATGCATCTTCATGGTGCTCATTATCCAAATTTTTTCAGGATTATTCTTCGCAGGAGATTGTTTTAAATTGGCCAGCCTTTATAGCCTCCCCACCTTGA

Coding sequence (CDS)

ATGGACATTATCACTTTGGAGTGTAAATTTCCAAGATTGGTTAGGATTGCAATCAATCCAAATGGGTCTGTTTCAGATCATTGTGACTCTTCAACCAATTCTTGGTCCATCTTGTTCAGAAGATTGCTAAATGTTGAGGAAATATTTTATTTCCAGACCTTGCTGAGTCAGATTTCTTCTTCACAGCCAGCCTCCTTTCCAGATCAAAGGTTTTGGTCCCTTAAAACCTCAGGCTTCTTCTCGGTAAAATCATTGGTTAAGCATCTTTCGACATTTTCTCCTTTGGAAAGTTCTTTGTACAAAAGGCTTTGGAAATCTAACAGCCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGGAAATTTAAACTGTGCCTCCGTACTTCAAAGAAAGCTTCCCTCTCATGCCCTCTCACCTCATGCCTGCCCCCTTTGTGTTTATAACATGGAAAGCATCCAGCACCTTTTATTTGATTGTGTCTTTGCTTCTAAAAGTTGGTTCCGCCTTCTCCAAGCATTCAATTTTTGTTGGGTTCTTGATCATGTTTTTAAGAACAATGTGTCTCAAATCCTTGCTGGTCCAAACTTGAAGAAGAAGACTGTTGAATGTTTGTGGGAAAATGCAGTAAAAGCTTTTTTAGCTGAAATCTGGTTTGAAAGAAACCAAAGAGTCTTCCATGATAAATCATCGACTTGGATGGAACGCTATGATTCTGCTCGTTTGAATGCATCTTCATGGTGCTCATTATCCAAATTTTTTCAGGATTATTCTTCGCAGGAGATTGTTTTAAATTGGCCAGCCTTTATAGCCTCCCCACCTTGA

Homology

[Close]

BLAST of CSPI01G33190 vs. TrEMBL
Match: M5XTH8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020284mg PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 87/272 (31.99%), Postives = 128/272 (47.06%), Query Frame = 1


Query: 10  FPRLVRIAINPNGSVSDHC--DSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQP-ASF 69
           FPRL  ++   N ++S     D    SW   FRR LN  EI     LL  +   +   S 
Sbjct: 215 FPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLLEGVRVITSR 274

Query: 70  PDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLFGNLN 129
            D+R W L  SG F+  S   H+      E  S Y ++WK+ +P ++ I +W  + G LN
Sbjct: 275 LDKRRWKLDPSGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFVWQAVLGKLN 334

Query: 130 CASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVLD--- 189
               LQR+ P   +SPH C LC    ES+ H+L  C F+ K W  LL+  N  WV+    
Sbjct: 335 TGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVNSVWVIPKGC 394

Query: 190 -HVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHD-KSSTWMERYDS 249
             +F      +  G     K  + LW + ++A +  +W ERN+R+F D K     E +D 
Sbjct: 395 FELFSIRFDALGRG-----KKAKILWGSLMQAVVWNLWMERNRRIFEDYKGVGVAELWDR 454

Query: 250 ARLNASSWCSLSKFFQDYSSQEIVLNWPAFIA 273
            +  A+ W S S  F+D     I+ N  A ++
Sbjct: 455 VKFWAALWASTSPAFKDVPYPIIMRNLLAVVS 481

[Close]

BLAST of CSPI01G33190 vs. TrEMBL
Match: M5WJI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020784mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.1e-27
Identity = 86/272 (31.62%), Postives = 128/272 (47.06%), Query Frame = 1


Query: 10  FPRLVRIAINPNGSVSDHC--DSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQP-ASF 69
           FPRL  ++   N ++S     D    SW   FRR LN  EI     LL  +   +  +S 
Sbjct: 238 FPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLLEGVRVFSSR 297

Query: 70  PDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLFGNLN 129
            D+R W L   G F+  S   H+      E  S Y ++WK+ +P ++ I +W  + G LN
Sbjct: 298 LDKRRWKLDPFGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFVWQAVLGKLN 357

Query: 130 CASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVLD--- 189
               LQR+ P   +SPH C LC    ES+ H+L  C F+ K W  LL+  N  WV+    
Sbjct: 358 TGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVNSVWVIPEGC 417

Query: 190 -HVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHD-KSSTWMERYDS 249
             +F      +  G     K  + LW + ++A +  +W ERN+R+F D K     E +D 
Sbjct: 418 FELFSIRFDALGRG-----KKAKILWGSLMQAVVWNLWMERNRRIFEDYKGVGVAELWDR 477

Query: 250 ARLNASSWCSLSKFFQDYSSQEIVLNWPAFIA 273
            +  A+ W S S  F+D     I+ N  A ++
Sbjct: 478 VKFWAALWASTSPAFKDVPYPIIMRNLLAVVS 504

[Close]

BLAST of CSPI01G33190 vs. TrEMBL
Match: A5AIV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028992 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 85/246 (34.55%), Postives = 119/246 (48.37%), Query Frame = 1


Query: 34  SWSILFRRLLNVEEIFYFQTLLSQISSSQ-PASFPDQRFWSLKTSGFFSVKSLVKHLSTF 93
           +W++ FRR L   EI   Q L+S +SS +   S  + R WSL +SG FSVKS    LS  
Sbjct: 56  AWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLANSRAWSLSSSGLFSVKSFFLALSKV 115

Query: 94  S-PLESSLYKRLWKSNSPRRINISIWIMLFGNLNCASVLQRKLPSHALSPHACPLCVYNM 153
           S P+     K LW S  P ++    WI+  G +N    LQ + P  +L P  C LC  N 
Sbjct: 116 SNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNG 175

Query: 154 ESIQHLLFDCVFASKSWFRLLQAFNFCWVLDHVFKNNVSQILA----GPNLKKKTVECLW 213
           ESI HL   C      W +L +     WVL   F++ +  ++A    G +L+ KT   LW
Sbjct: 176 ESIDHLFLHCPVTIGLWNKLFKLAGLVWVLSRSFEDML--VIAFKGLGNSLRGKT---LW 235

Query: 214 ENAVKAFLAEIWFERNQRVFHDKSSTWMERYDSARLNASSWCSLSKFFQDYSSQEIVLNW 273
           + A   F+  +W ERN R+F DK  +    +D     ++ W S S  F+      + LNW
Sbjct: 236 QVACLTFVWIVWQERNNRIFEDKGRSEETLWDLILFYSTLWASCSAAFRGVPLNVLQLNW 295

[Close]

BLAST of CSPI01G33190 vs. TrEMBL
Match: M5W647_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019748mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 82/258 (31.78%), Postives = 122/258 (47.29%), Query Frame = 1


Query: 10   FPRLVRIAINPNGSVSDHC--DSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQP-ASF 69
            FPRL  ++   N ++S     D    SW   FRR LN  EI     LL  +   +   S 
Sbjct: 911  FPRLFNLSRKQNHNISSFTGLDGFPLSWDFSFRRNLNELEITEAARLLDLLEGVRVITSR 970

Query: 70   PDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLFGNLN 129
             D+R W L   G F+  S   H+      E  S Y ++WK+ +P ++ I +W  + G LN
Sbjct: 971  LDKRRWKLDPFGLFTCHSFCSHIQNRDEREIFSPYTQIWKAKTPPKVKIFVWQAVLGKLN 1030

Query: 130  CASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVLD--- 189
                LQR+ P   +SPH C LC    +S+ HLL  C F+ K W  LL+  N  WV+    
Sbjct: 1031 TGDTLQRRCPYLCISPHWCALCNKAGQSVDHLLIHCPFSLKLWETLLKEVNTVWVIPEGC 1090

Query: 190  -HVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHD-KSSTWMERYDS 249
              +F      +  G     K  + LW + ++A +  +W ER++R+F D K     E +D 
Sbjct: 1091 FELFSIRFDALGRG-----KKAKILWGSLMQAVVWNLWMERSRRIFEDYKGVGVAELWDR 1150

Query: 250  ARLNASSWCSLSKFFQDY 259
             +  A+ W S S  F+D+
Sbjct: 1151 VKFWAALWASTSPAFKDW 1163

[Close]

BLAST of CSPI01G33190 vs. TrEMBL
Match: A5AUH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012130 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.7e-26
Identity = 90/267 (33.71%), Postives = 122/267 (45.69%), Query Frame = 1


Query: 5   TLECKFPRLVRIAINPNGSVSDHCDSSTN-SWSILFRRLLNVEEIFYFQTLLSQISSS-- 64
           TL  +F  L R+    N +VS+   +S   SW+  FRR L   EI   Q L+S + S   
Sbjct: 482 TLCAQFAELYRVISVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLL 541

Query: 65  QPASFPDQRFWSLKTSGFFSVKSLVKHLSTFS-PLESSLYKRLWKSNSPRRINISIWIML 124
            P+S  D R WSL +SG FSVKS    LS  S PL     K LW S  P ++    W++ 
Sbjct: 542 SPSS-SDSRAWSLSSSGSFSVKSFFYALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVA 601

Query: 125 FGNLNCASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWV 184
            G +N    LQ + P  AL P  C LC  N ESI HL   C      W RL       WV
Sbjct: 602 HGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWV 661

Query: 185 LDHVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHDKSSTWMERYDS 244
                ++ +     G     +  + LW+ A    +  +W ERN R+F DK  T    +D 
Sbjct: 662 PPRSIEDMLVISFKGLGNSVRG-KILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDL 721

Query: 245 ARLNASSWCSLSKFFQDYSSQEIVLNW 268
            R  +S W S ++ F+      + +NW
Sbjct: 722 IRFYSSLWASCTEAFRGVPLSILQINW 746

[Close]

BLAST of CSPI01G33190 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-07
Identity = 45/158 (28.48%), Postives = 66/158 (41.77%), Query Frame = 1


Query: 24  VSDHCDSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQPAS--FPDQRFWSLKTSGFFS 83
           VSD  D S   W        +V E+ + +     I   +P      D   W   +SG ++
Sbjct: 171 VSDLIDESGREWR------KDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYT 230

Query: 84  VKSLVKHLSTF-----SPLESS------LYKRLWKSNSPRRINISIWIMLFGNLNCASVL 143
           VKS    L+       SP E S      +Y+++WKS +  +I   +W  L  +L  A  L
Sbjct: 231 VKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGAL 290

Query: 144 QRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSW 169
             +   H     AC  C    E++ HLLF C FA  +W
Sbjct: 291 AYR---HLSKESACIRCPSCKETVNHLLFKCTFARLTW 319

[Close]

BLAST of CSPI01G33190 vs. TAIR10
Match: AT3G09510.1 (AT3G09510.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 49/198 (24.75%), Postives = 84/198 (42.42%), Query Frame = 1


Query: 67  PDQRFWSLKTSGFFSVKS---LVKH-----LSTFSPLESS--LYKRLWKSNSPRRINISI 126
           PD+  W+  T+G ++V+S   L+ H     +   +P   S  L  R+W      ++   +
Sbjct: 116 PDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFL 175

Query: 127 WIMLFGNLNCASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFN 186
           W  L   L     L  +     + P +CP C    ESI H LF C FA+ +W     +  
Sbjct: 176 WRALSQALATTERLTTR--GMRIDP-SCPRCHRENESINHALFTCPFATMAWRLSDSSLI 235

Query: 187 FCWVLDHVFKNNVSQILAGPNLKKKTVECLWENAVKAFLA-EIWFERNQRVFHDKSSTWM 246
              ++ + F+ N+S IL   N  + T    +   +  +L   IW  RN  VF+    +  
Sbjct: 236 RNQLMSNDFEENISNIL---NFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPS 295

Query: 247 ERYDSARLNASSWCSLSK 254
           +   SA+     W + ++
Sbjct: 296 KTVLSAKAETHDWLNATQ 307

[Close]

BLAST of CSPI01G33190 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 133.3 bits (334), Expect = 6.6e-28
Identity = 82/264 (31.06%), Postives = 129/264 (48.86%), Query Frame = 1


Query: 6   LECKFPRLVRIAINPNGSVSDHCDSSTNS--WSILFRRLLNVEEIFYFQTLLSQISSSQP 65
           L+ +FPRL  ++   N ++S   D STNS  W+  FRR LN  EI     LL ++   + 
Sbjct: 476 LKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFRRNLNEAEIEEAARLLQKVEEVRL 535

Query: 66  A-SFPDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLF 125
           + S  D R W ++ SG F+ KS    LS    ++    + ++WKS  P ++ I +W+   
Sbjct: 536 SQSRXDNRRWKMEASGLFTCKSYCSFLSNNGMMQYFQPHSQIWKSKVPPKVKILVWLAAK 595

Query: 126 GNLNCASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVL 185
           G LN    +QR+ P   LSP  C LC    ES+ H+   C +  + W++L Q     WV+
Sbjct: 596 GKLNTCDQIQRRSPFICLSPQWCSLCKAKEESVNHIFLHCSYTIQLWWKLFQEVRASWVI 655

Query: 186 DHVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHDKSSTWME-RYDS 245
                  +S         +K  + LW   V A    IW ERN+R+F D +   +E  +  
Sbjct: 656 XKGCFELLSTKFQALGSGRK-AKALWGCLVSAVFWNIWLERNKRIFEDYTGVGVEVLWGR 715

Query: 246 ARLNASSWCSLSKFFQDYSSQEIV 265
            +  A+ W S+S  F +YS  +++
Sbjct: 716 VKYWAALWASVSNVFNNYSISQLL 738

[Close]

BLAST of CSPI01G33190 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 133.3 bits (334), Expect = 6.6e-28
Identity = 82/264 (31.06%), Postives = 129/264 (48.86%), Query Frame = 1


Query: 6    LECKFPRLVRIAINPNGSVSDHCDSSTNS--WSILFRRLLNVEEIFYFQTLLSQISSSQP 65
            L+ +FPRL  ++   N ++S   D STNS  W+  FRR LN  EI     LL ++   + 
Sbjct: 1950 LKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFRRNLNEAEIEEAARLLQKVEEVRL 2009

Query: 66   A-SFPDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLF 125
            + S  D R W ++ SG F+ KS    LS    ++    + ++WKS  P ++ I +W+   
Sbjct: 2010 SQSRXDNRRWKMEASGLFTCKSYCSFLSNNGMMQYFQPHSQIWKSKVPPKVKILVWLAAK 2069

Query: 126  GNLNCASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVL 185
            G LN    +QR+ P   LSP  C LC    ES+ H+   C +  + W++L Q     WV+
Sbjct: 2070 GKLNTCDQIQRRSPFICLSPQWCSLCKAKEESVNHIFLHCSYTIQLWWKLFQEVRASWVI 2129

Query: 186  DHVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHDKSSTWME-RYDS 245
                   +S         +K  + LW   V A    IW ERN+R+F D +   +E  +  
Sbjct: 2130 XKGCFELLSTKFQALGSGRK-AKALWGCLVSAVFWNIWLERNKRIFEDYTGVGVEVLWGR 2189

Query: 246  ARLNASSWCSLSKFFQDYSSQEIV 265
             +  A+ W S+S  F +YS  +++
Sbjct: 2190 VKYWAALWASVSNVFNNYSISQLL 2212

[Close]

BLAST of CSPI01G33190 vs. NCBI nr
Match: gi|596062294|ref|XP_007221156.1| (hypothetical protein PRUPE_ppa020284mg [Prunus persica])

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 87/272 (31.99%), Postives = 128/272 (47.06%), Query Frame = 1


Query: 10  FPRLVRIAINPNGSVSDHC--DSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQP-ASF 69
           FPRL  ++   N ++S     D    SW   FRR LN  EI     LL  +   +   S 
Sbjct: 215 FPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLLEGVRVITSR 274

Query: 70  PDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLFGNLN 129
            D+R W L  SG F+  S   H+      E  S Y ++WK+ +P ++ I +W  + G LN
Sbjct: 275 LDKRRWKLDPSGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFVWQAVLGKLN 334

Query: 130 CASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVLD--- 189
               LQR+ P   +SPH C LC    ES+ H+L  C F+ K W  LL+  N  WV+    
Sbjct: 335 TGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVNSVWVIPKGC 394

Query: 190 -HVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHD-KSSTWMERYDS 249
             +F      +  G     K  + LW + ++A +  +W ERN+R+F D K     E +D 
Sbjct: 395 FELFSIRFDALGRG-----KKAKILWGSLMQAVVWNLWMERNRRIFEDYKGVGVAELWDR 454

Query: 250 ARLNASSWCSLSKFFQDYSSQEIVLNWPAFIA 273
            +  A+ W S S  F+D     I+ N  A ++
Sbjct: 455 VKFWAALWASTSPAFKDVPYPIIMRNLLAVVS 481

[Close]

BLAST of CSPI01G33190 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 86/269 (31.97%), Postives = 136/269 (50.56%), Query Frame = 1


Query: 6   LECKFPRLVRIAINPNGSVSDHCDSSTNS--WSILFRRLLNVEEIFYFQTLLSQISSSQP 65
           L+ +FP+L  ++     ++S   + S+NS  W+  FRR LN  EI    TLL ++   + 
Sbjct: 292 LKEQFPKLFLLSRKHGHNISRFVEGSSNSLSWNFDFRRNLNEMEIEEAATLLQKVEEVRL 351

Query: 66  A-SFPDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLF 125
           + S  D R W+L+ SG F+ KS    LS    +     Y ++WKS +P+++ I +W++  
Sbjct: 352 SPSKMDNRRWNLEASGLFTCKSYRSLLSNNGIVHYYPPYSQIWKSKAPQKVKILVWLVAN 411

Query: 126 GNLNCASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVL 185
           GNLN    +QR+ P   LSPH C LC     S+ H+   C ++ + W++L Q     WV+
Sbjct: 412 GNLNTCDRIQRRNPRMCLSPHWCSLCKAMEVSVNHIFLHCSYSIQLWWKLFQEVKVSWVI 471

Query: 186 DH-VFKNNVSQILAGPNLKK----KTVECLWENAVKAFLAEIWFERNQRVFHDKSSTWME 245
               F+      L G N K     K  + LW   V A    IW ERN+R+F D +    E
Sbjct: 472 PKGCFE------LLGTNFKALGKGKKSKALWGCLVSAIFWNIWLERNKRIFEDYTGVGAE 531

Query: 246 -RYDSARLNASSWCSLSKFFQDYSSQEIV 265
             +   +  A+ W S++K F + S  +I+
Sbjct: 532 VLWGRVKYWAAFWASVTKEFNNCSLSQIL 554

[Close]

BLAST of CSPI01G33190 vs. NCBI nr
Match: gi|595841355|ref|XP_007208194.1| (hypothetical protein PRUPE_ppa020784mg [Prunus persica])

HSP 1 Score: 129.8 bits (325), Expect = 7.3e-27
Identity = 86/272 (31.62%), Postives = 128/272 (47.06%), Query Frame = 1


Query: 10  FPRLVRIAINPNGSVSDHC--DSSTNSWSILFRRLLNVEEIFYFQTLLSQISSSQP-ASF 69
           FPRL  ++   N ++S     D    SW   FRR LN  EI     LL  +   +  +S 
Sbjct: 238 FPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLLEGVRVFSSR 297

Query: 70  PDQRFWSLKTSGFFSVKSLVKHLSTFSPLES-SLYKRLWKSNSPRRINISIWIMLFGNLN 129
            D+R W L   G F+  S   H+      E  S Y ++WK+ +P ++ I +W  + G LN
Sbjct: 298 LDKRRWKLDPFGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFVWQAVLGKLN 357

Query: 130 CASVLQRKLPSHALSPHACPLCVYNMESIQHLLFDCVFASKSWFRLLQAFNFCWVLD--- 189
               LQR+ P   +SPH C LC    ES+ H+L  C F+ K W  LL+  N  WV+    
Sbjct: 358 TGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVNSVWVIPEGC 417

Query: 190 -HVFKNNVSQILAGPNLKKKTVECLWENAVKAFLAEIWFERNQRVFHD-KSSTWMERYDS 249
             +F      +  G     K  + LW + ++A +  +W ERN+R+F D K     E +D 
Sbjct: 418 FELFSIRFDALGRG-----KKAKILWGSLMQAVVWNLWMERNRRIFEDYKGVGVAELWDR 477

Query: 250 ARLNASSWCSLSKFFQDYSSQEIVLNWPAFIA 273
            +  A+ W S S  F+D     I+ N  A ++
Sbjct: 478 VKFWAALWASTSPAFKDVPYPIIMRNLLAVVS 504

The following BLAST results are available for this feature:

BLAST of CSPI01G33190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33190 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XTH8_PRUPE	1.3e-27	31.99	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020284mg PE=4 SV=1	[more]
M5WJI4_PRUPE	5.1e-27	31.62	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020784mg PE=4 SV=1	[more]
A5AIV6_VITVI	1.9e-26	34.55	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028992 PE=4 SV=1	[more]
M5W647_PRUPE	3.3e-26	31.78	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019748mg PE=4 S...	[more]
A5AUH3_VITVI	9.7e-26	33.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012130 PE=4 SV=1	[more]

BLAST of CSPI01G33190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29090.1	5.3e-07	28.48	Ribonuclease H-like superfamily protein	[more]
AT3G09510.1	1.5e-06	24.75	Ribonuclease H-like superfamily protein	[more]

BLAST of CSPI01G33190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658048925\|ref\|XP_008360144.1\|	6.6e-28	31.06	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	6.6e-28	31.06	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|596062294\|ref\|XP_007221156.1\|	1.9e-27	31.99	hypothetical protein PRUPE_ppa020284mg [Prunus persica]	[more]
gi\|657996200\|ref\|XP_008390463.1\|	1.9e-27	31.97	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|595841355\|ref\|XP_007208194.1\|	7.3e-27	31.62	hypothetical protein PRUPE_ppa020784mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33190.1	CSPI01G33190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 80..168 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33190	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33190	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33190	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33190	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33190	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G33190	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G33190	Cucumber (Gy14) v1	cgycpiB584