CSPI01G33160 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33160
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ty3/gypsy retrotransposon protein
Location	Chr1 : 28029370 .. 28030220 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACACCCCTTTACTGCCAAGCAAGTGGCCGAAGTGTTTATTGACAGGGTAGTGAGTACACATGGAATACCCAAGTCAATCATATCCGACAGAGACAAAATTTTCATTAGCAATTTTTGGAAAGAACTATTTGCTAACATGGGGACAATCCTAAAAAGAAGTATGATGTTTCACCCACAAACGGATGAAGTGGTAAACCGAAAGGGTAAACTGCTGCGTAGAAACATATTTGAGGTGTTTTTGTAATGAACAGCCTCAGAAGTGGAATAAATTCATTCCTTGGGCAGAATTATGGTATAACACGACCTTTCATGCTTCCACAAGATCCAATCCCTTCCAGATTGTATATGGCAGACAACCCCTCGATATCATATGGCAACAACAAGACTCCTCAAGACACCTCACAATGAAGTGGAACAAATGCTAAAAGAGAGGGATTTAGCCCTGAATGCTCTAAAGGAAAACTTGAACATTGCGCAAACCGAAGGAAGAAAATGGTCAACACAAAAAGGAGAGAGCTTAAGTTCAAGGTGGGAGATGAGGTATATCTCAAGCTTCGACCATATAGGCAACGTTCGTTAGCACGGAAGAGATCTGACAAGTCGGCTCCTAAATTCTATGGACCATATAAGATCGTTGAGGAAATTGGGGAAGTGGTGTATAGACTACAATTACCTCCCAAAGCCTCTGTTCATGATGTCTTCCACATTTCCCAACTTAAATTGAAATTGGGGAAACAGCAAGTGGTGCAAATCCAACAACCAGTCCTGCCAGAAGACTTTGAACTACAATTAAGACCAGAGACTATGCTGAGGATCCGTTGGAATACTGAACTAGGGGCCAATGAC

mRNA sequence

ATGAGACACCCCTTTACTGCCAAGCAAGTGGCCGAAGTGTTTATTGACAGGGTAGTGAGTACACATGGAATACCCAAGTCAATCATATCCGACAGAGACAAAATTTTCATTAGCAATTTTTGGAAAGAACTATTTGCTAACATGGGGACAATCCTAAAAAGAAGTATGATGTTTCACCCACAAACGGATGAAGTGAATTATGGTATAACACGACCTTTCATGCTTCCACAAGATCCAATCCCTTCCAGATTTGGAACAAATGCTAAAAGAGAGGGATTTAGCCCTGAATGCTCTAAAGGAAAACTTGAACATTGCGCAAACCGAAGGAAGAAAATGGTCAACACAAAAAGGAGAGAGCTTAAGTTCAAGGTGGGAGATGAGGTATATCTCAAGCTTCGACCATATAGGCAACGTTCGTTAGCACGGAAGAGATCTGACAAGTCGGCTCCTAAATTCTATGGACCATATAAGATCGTTGAGGAAATTGGGGAAGTGGTGTATAGACTACAATTACCTCCCAAAGCCTCTGTTCATGATGTCTTCCACATTTCCCAACTTAAATTGAAATTGGGGAAACAGCAAGTGGTGCAAATCCAACAACCAGTCCTGCCAGAAGACTTTGAACTACAATTAAGACCAGAGACTATGCTGAGGATCCGTTGGAATACTGAACTAGGGGCCAATGAC

Coding sequence (CDS)

ATGAGACACCCCTTTACTGCCAAGCAAGTGGCCGAAGTGTTTATTGACAGGGTAGTGAGTACACATGGAATACCCAAGTCAATCATATCCGACAGAGACAAAATTTTCATTAGCAATTTTTGGAAAGAACTATTTGCTAACATGGGGACAATCCTAAAAAGAAGTATGATGTTTCACCCACAAACGGATGAAGTGAATTATGGTATAACACGACCTTTCATGCTTCCACAAGATCCAATCCCTTCCAGATTTGGAACAAATGCTAAAAGAGAGGGATTTAGCCCTGAATGCTCTAAAGGAAAACTTGAACATTGCGCAAACCGAAGGAAGAAAATGGTCAACACAAAAAGGAGAGAGCTTAAGTTCAAGGTGGGAGATGAGGTATATCTCAAGCTTCGACCATATAGGCAACGTTCGTTAGCACGGAAGAGATCTGACAAGTCGGCTCCTAAATTCTATGGACCATATAAGATCGTTGAGGAAATTGGGGAAGTGGTGTATAGACTACAATTACCTCCCAAAGCCTCTGTTCATGATGTCTTCCACATTTCCCAACTTAAATTGAAATTGGGGAAACAGCAAGTGGTGCAAATCCAACAACCAGTCCTGCCAGAAGACTTTGAACTACAATTAAGACCAGAGACTATGCTGAGGATCCGTTGGAATACTGAACTAGGGGCCAATGAC

Homology

[Close]

BLAST of CSPI01G33160 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 6    TAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHPQTD 64
            TA+Q A +F  RV++  G PK II+D D IF S  WK+       ++K S+ + PQTD
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of CSPI01G33160 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 6    TAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHPQTD 64
            TA+Q A +F  RV++  G PK II+D D IF S  WK+       ++K S+ + PQTD
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of CSPI01G33160 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 6    TAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHPQTD 64
            TA+Q A +F  RV++  G PK II+D D IF S  WK+       ++K S+ + PQTD
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of CSPI01G33160 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 6    TAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHPQTD 64
            TA+Q A +F  RV++  G PK II+D D IF S  WK+       ++K S+ + PQTD
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of CSPI01G33160 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 6    TAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHPQTD 64
            TA+Q A +F  RV++  G PK II+D D IF S  WK+       ++K S+ + PQTD
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of CSPI01G33160 vs. TrEMBL
Match: A0A151RRQ4_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_033252 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 109/258 (42.25%), Postives = 142/258 (55.04%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            + HPFTAK+VAEVFI  VV  HGI    +SDRDKIF+S+FW ELF  +GT LK S  +HP
Sbjct: 930  LSHPFTAKEVAEVFITEVVKLHGI----VSDRDKIFLSHFWSELFKLVGTRLKFSTAYHP 989

Query: 61   QTDE----VN------------------------YGITRPFMLPQDPIPSRFGT----NA 120
            QTD     VN                        YG   P +L    IPS          
Sbjct: 990  QTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLTLYGRDPPHLLKGTTIPSTVEEVNLMTY 1049

Query: 121  KREGFSPECSKGKLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKS 180
             R+    +  K  L    N+ KK  +  RR +   +GD VYLKL+PYR RSLARKR++K 
Sbjct: 1050 DRDQMLHDL-KENLVTAQNQMKKYADQSRRAVSLAIGDWVYLKLKPYRLRSLARKRNEKM 1109

Query: 181  APKFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPEDFE 227
            +P+FYGPY+I ++IG V ++L LPP++ +H VFH+S LK  L      Q   P+L E+ E
Sbjct: 1110 SPRFYGPYQITKQIGVVAFQLALPPESKIHPVFHVSLLKKALSPSATPQPLPPMLSEELE 1169

[Close]

BLAST of CSPI01G33160 vs. TrEMBL
Match: A0A151TXQ4_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_011106 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 87/240 (36.25%), Postives = 135/240 (56.25%), Query Frame = 1


Query: 1   MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
           ++  +++KQVAEVF+  +V  HGIPKSI+SDRD++F SNFW++L    GT L  S  +HP
Sbjct: 171 LKADYSSKQVAEVFMKSIVRLHGIPKSIVSDRDRVFTSNFWQQLCKLSGTTLAMSTAYHP 230

Query: 61  QTDEVNYGITRPFMLPQDPIPSRFGTN-------AKREGFSPE-------------CSKG 120
           Q+DE  Y  +    +   P  + +G +        K +   P              C K 
Sbjct: 231 QSDEYWYNTSFHTSIGMTPFKAVYGRDPPTLPKYVKDDTEPPSLHEMLLHRDQTILCLKQ 290

Query: 121 KLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKSAPKFYGPYKIVE 180
            L    N  KK  + KR  ++F+VGD V++KL+PYRQ S+A +++ K   +++GP+ +++
Sbjct: 291 NLMKAQNLMKKYADQKRVHVEFQVGDLVFVKLQPYRQHSVALRKNQKLGLRYFGPFPVMQ 350

Query: 181 EIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPEDFELQLRPETMLRIR 221
            IG V Y+L LPP A +H VFH+S LK   G+ Q   +  P L  +F   ++P  +L+ R
Sbjct: 351 RIGPVAYKLALPPTAKIHPVFHVSLLKPCKGEHQQQYLPLPFLTNEFGPVIQPLKVLQFR 410

[Close]

BLAST of CSPI01G33160 vs. TrEMBL
Match: A0A151TXZ2_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_011108 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 94/252 (37.30%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            +RHPFTAK VA++F+  VV  HGIPKSI+SDRD +F+S+FW +LF + GT L+ S  +HP
Sbjct: 954  LRHPFTAKTVADLFVKEVVKLHGIPKSIVSDRDPLFLSHFWTQLFKSQGTKLRMSSSYHP 1013

Query: 61   QTDEVNYGITR---------------------PFMLPQDPIPSRFGTNAKREGFSPECSK 120
            +TD     I +                     P  L Q         + ++E    + + 
Sbjct: 1014 ETDGQTEIINKCLETYLRCFCSEQPKTWVNWKPPTLVQYVTGETKVESVEKELIDRDEAL 1073

Query: 121  GKLEHCANRR----KKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKSAPKFYGP 180
             +L +   R     KK  + KR    ++VGD V+LKLRP++Q+SLA++ + K A +FYGP
Sbjct: 1074 RQLRYHLQRAQGHIKKYADRKRSHHSYEVGDWVFLKLRPHKQQSLAQRINPKLAARFYGP 1133

Query: 181  YKIVEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGK-QQVVQIQQPVLPEDFELQLRPE 227
            Y+I ++IG V Y+L+LP  + +H +FHISQLK  +G  Q+ V +   +  E FE  + PE
Sbjct: 1134 YQIEKKIGAVAYQLKLPSHSKIHPIFHISQLKKAVGNYQETVDLPAGLEAEVFE-NITPE 1193

[Close]

BLAST of CSPI01G33160 vs. TrEMBL
Match: A0A151T3I1_CAJCA (Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_016104 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 88/236 (37.29%), Postives = 131/236 (55.51%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            ++HP+TA  VA+ F+D V   HG P +I SDRD +F+S FWKE  A  G  ++ S  +HP
Sbjct: 840  LQHPYTAATVAQCFLDNVFKLHGFPTTITSDRDSVFVSRFWKEFMAVQGVQIQLSTAYHP 899

Query: 61   QTD--------------------------EVNYGITRPFMLPQDPIPSRFG----TNAKR 120
            QTD                          E+ YG T P  LP  P  S+      +  KR
Sbjct: 900  QTDGQTEVVNRCVETYLRCMCCDEPKHPYEIVYGQTPPTYLPYLPGESKVELVDRSLQKR 959

Query: 121  EGFSPECSKGKLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKSAP 180
            E    + +K  ++    R K++ +  R E +F+VGD V++KL PYRQ S+A + + K AP
Sbjct: 960  EEML-KLAKFHMKRAQERMKQLADKHRSEREFQVGDLVFVKLHPYRQISVAFRSNAKLAP 1019

Query: 181  KFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPED 207
            ++YGPY ++E+IG V Y++QLP  + +H+VFH+SQLK  +G+        P+L E+
Sbjct: 1020 EYYGPYPVLEKIGAVAYKVQLPANSLIHNVFHVSQLKKLVGEAH-TSTDCPILEEE 1073

[Close]

BLAST of CSPI01G33160 vs. TrEMBL
Match: A5AD26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011228 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-34
Identity = 93/258 (36.05%), Postives = 131/258 (50.78%), Query Frame = 1


Query: 1   MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
           + HPF+AK VAE F+D VV  HG+P SIISDRD IFISNFW+E F   GT LK S  +HP
Sbjct: 298 LTHPFSAKMVAEKFVDGVVKLHGMPSSIISDRDPIFISNFWREFFKLSGTQLKMSSAYHP 357

Query: 61  QTDE---------------------------------VNYGITRP----FMLPQDPIPSR 120
           QTD                                    YG   P    + L   P+   
Sbjct: 358 QTDGQIKQPRKWYSLIPWAEFWYNTAYHASTDMSPFQALYGRPPPMIPHYQLGSSPVNEV 417

Query: 121 FGTNAKREGFSPECSKGKLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARK 180
               A R+    +  K  L   +NR K++ ++KRR+++F   D V+L+L P RQ+++ ++
Sbjct: 418 DQNLASRDDLLHQL-KLNLHQASNRMKQIADSKRRDIEFNEXDLVFLRLHPXRQQTVFKR 477

Query: 181 RSDKSAPKFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVL 222
            S K   +FYGP+ I + IG+V Y+LQLP  + +H VFH+  LK  +G         P L
Sbjct: 478 ASQKLXHRFYGPFPIEKRIGKVAYQLQLPAGSXIHPVFHVXLLKKTIGDSNARCPTLPPL 537

[Close]

BLAST of CSPI01G33160 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 90/131 (68.70%), Postives = 107/131 (81.68%), Query Frame = 1


Query: 99   KGKLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKSAPKFYGPYKI 158
            K  L    NR KK  + KRRELK KVG+EVYLKL+PYRQRSLARK+S+K AP++YGPYKI
Sbjct: 949  KENLTLAQNRMKKFADLKRRELKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKI 1008

Query: 159  VEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPEDFELQLRPETMLR 218
            +EEIG V YRL LPP+A++H+VFHISQLK KLG QQVVQ Q  +L E+FELQL+PE +L 
Sbjct: 1009 IEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHLMLTENFELQLQPENVLG 1068

Query: 219  IRWNTELGAND 230
            IRWN ELGAN+
Sbjct: 1069 IRWNKELGANE 1079

[Close]

BLAST of CSPI01G33160 vs. NCBI nr
Match: gi|1012333858|gb|KYP45237.1| (Retrotransposable element Tf2 [Cajanus cajan])

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 109/258 (42.25%), Postives = 142/258 (55.04%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            + HPFTAK+VAEVFI  VV  HGI    +SDRDKIF+S+FW ELF  +GT LK S  +HP
Sbjct: 930  LSHPFTAKEVAEVFITEVVKLHGI----VSDRDKIFLSHFWSELFKLVGTRLKFSTAYHP 989

Query: 61   QTDE----VN------------------------YGITRPFMLPQDPIPSRFGT----NA 120
            QTD     VN                        YG   P +L    IPS          
Sbjct: 990  QTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLTLYGRDPPHLLKGTTIPSTVEEVNLMTY 1049

Query: 121  KREGFSPECSKGKLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKS 180
             R+    +  K  L    N+ KK  +  RR +   +GD VYLKL+PYR RSLARKR++K 
Sbjct: 1050 DRDQMLHDL-KENLVTAQNQMKKYADQSRRAVSLAIGDWVYLKLKPYRLRSLARKRNEKM 1109

Query: 181  APKFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPEDFE 227
            +P+FYGPY+I ++IG V ++L LPP++ +H VFH+S LK  L      Q   P+L E+ E
Sbjct: 1110 SPRFYGPYQITKQIGVVAFQLALPPESKIHPVFHVSLLKKALSPSATPQPLPPMLSEELE 1169

[Close]

BLAST of CSPI01G33160 vs. NCBI nr
Match: gi|923614274|ref|XP_013745228.1| (PREDICTED: uncharacterized protein LOC106447810 [Brassica napus])

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 100/278 (35.97%), Postives = 138/278 (49.64%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            +RHPFTA  VA  F+  V+  HG PK+I+SDRD+IF   FWKELF   GT L  S  +HP
Sbjct: 1231 LRHPFTAIDVARSFVQEVIRLHGYPKTIVSDRDRIFTGQFWKELFRLSGTTLCFSTAYHP 1290

Query: 61   QTD--------------------------------EVNYGITRPFMLPQDPIPSRFG--- 120
            QTD                                E +Y  +    +   P  + +G   
Sbjct: 1291 QTDGQTEVTNRGLETYLRCFAGEKPRTWAKYLQWAEFSYNTSYHSTIQMSPFTALYGREP 1350

Query: 121  -----------TNAKREGFSPECS------KGKLEHCANRRKKMVNTKRRELKFKVGDEV 180
                        NA  E    E        + +L       K   +  RRE++F+VGD+V
Sbjct: 1351 PTLLHYENGSTNNADLESRLQERDDNLALLRQQLLKAQQIMKARADEHRREVEFEVGDKV 1410

Query: 181  YLKLRPYRQRSLARKRSDKSAPKFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKL 227
            +LKLRPYRQ+SLARK ++K A +FYGPY++   +G+V YRL LP +A +H  FH+SQLK 
Sbjct: 1411 FLKLRPYRQKSLARKVNEKLAARFYGPYEVAARVGKVAYRLNLPAEARIHPTFHVSQLKK 1470

[Close]

BLAST of CSPI01G33160 vs. NCBI nr
Match: gi|1012360648|gb|KYP71832.1| (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36
Identity = 87/240 (36.25%), Postives = 135/240 (56.25%), Query Frame = 1


Query: 1   MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
           ++  +++KQVAEVF+  +V  HGIPKSI+SDRD++F SNFW++L    GT L  S  +HP
Sbjct: 171 LKADYSSKQVAEVFMKSIVRLHGIPKSIVSDRDRVFTSNFWQQLCKLSGTTLAMSTAYHP 230

Query: 61  QTDEVNYGITRPFMLPQDPIPSRFGTN-------AKREGFSPE-------------CSKG 120
           Q+DE  Y  +    +   P  + +G +        K +   P              C K 
Sbjct: 231 QSDEYWYNTSFHTSIGMTPFKAVYGRDPPTLPKYVKDDTEPPSLHEMLLHRDQTILCLKQ 290

Query: 121 KLEHCANRRKKMVNTKRRELKFKVGDEVYLKLRPYRQRSLARKRSDKSAPKFYGPYKIVE 180
            L    N  KK  + KR  ++F+VGD V++KL+PYRQ S+A +++ K   +++GP+ +++
Sbjct: 291 NLMKAQNLMKKYADQKRVHVEFQVGDLVFVKLQPYRQHSVALRKNQKLGLRYFGPFPVMQ 350

Query: 181 EIGEVVYRLQLPPKASVHDVFHISQLKLKLGKQQVVQIQQPVLPEDFELQLRPETMLRIR 221
            IG V Y+L LPP A +H VFH+S LK   G+ Q   +  P L  +F   ++P  +L+ R
Sbjct: 351 RIGPVAYKLALPPTAKIHPVFHVSLLKPCKGEHQQQYLPLPFLTNEFGPVIQPLKVLQFR 410

[Close]

BLAST of CSPI01G33160 vs. NCBI nr
Match: gi|731403730|ref|XP_010655166.1| (PREDICTED: uncharacterized protein LOC104880390 [Vitis vinifera])

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 100/273 (36.63%), Postives = 134/273 (49.08%), Query Frame = 1


Query: 1    MRHPFTAKQVAEVFIDRVVSTHGIPKSIISDRDKIFISNFWKELFANMGTILKRSMMFHP 60
            + HPFT K VAE FI+ VV  HG+P+SIISDRD IFIS FW+E F   G+ L  S  +HP
Sbjct: 973  LTHPFTTKVVAEKFIEGVVKLHGMPRSIISDRDPIFISKFWQEFFKLSGSKLMLSSAYHP 1032

Query: 61   QTD--------------------------------EVNYGITRPFMLPQDPIPSRFG--- 120
            Q D                                E  Y  T        P  + +G   
Sbjct: 1033 QIDGQTEVVNRCVEQYLRCFVHQWPRKWSTYLAWAEYWYNTTYHASTKMTPYQALYGRLP 1092

Query: 121  --TNAKREGFSP---------------ECSKGKLEHCANRRKKMVNTKRRELKFKVGDEV 180
                A  EG SP                  K  LE   NR K+  + KRR+++F VG++V
Sbjct: 1093 PLIPAYPEGLSPVHEVDQTLLHRDELLHQLKTNLEISMNRMKQQADPKRRDIQFAVGNQV 1152

Query: 181  YLKLRPYRQRSLARKRSDKSAPKFYGPYKIVEEIGEVVYRLQLPPKASVHDVFHISQLKL 222
             LKL PYRQ+++ ++   K + ++YGPY I+E+I  V YRLQLPP A +H VFH+S LK 
Sbjct: 1153 LLKLCPYRQQTVFKRAHQKLSSRYYGPYPILEKIRAVAYRLQLPPTARIHPVFHVSLLKP 1212

The following BLAST results are available for this feature:

BLAST of CSPI01G33160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	1.6e-06	43.10	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF212_SCHPO	1.6e-06	43.10	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	1.6e-06	43.10	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF22_SCHPO	1.6e-06	43.10	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	1.6e-06	43.10	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI01G33160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RRQ4_CAJCA	3.3e-40	42.25	Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_033252 PE=4 SV=1	[more]
A0A151TXQ4_CAJCA	5.0e-36	36.25	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_011106 PE=4 SV=1	[more]
A0A151TXZ2_CAJCA	2.5e-35	37.30	Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_011108 PE=4 SV=1	[more]
A0A151T3I1_CAJCA	1.2e-34	37.29	Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_016104 PE=4 SV=...	[more]
A5AD26_VITVI	1.6e-34	36.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011228 PE=4 SV=1	[more]

BLAST of CSPI01G33160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	3.0e-42	68.70	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|1012333858\|gb\|KYP45237.1\|	4.8e-40	42.25	Retrotransposable element Tf2 [Cajanus cajan]	[more]
gi\|923614274\|ref\|XP_013745228.1\|	1.3e-37	35.97	PREDICTED: uncharacterized protein LOC106447810 [Brassica napus]	[more]
gi\|1012360648\|gb\|KYP71832.1\|	7.2e-36	36.25	Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]	[more]
gi\|731403730\|ref\|XP_010655166.1\|	2.7e-35	36.63	PREDICTED: uncharacterized protein LOC104880390 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33160.1	CSPI01G33160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 6..62 score: 6.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 5..64 score: 2.47
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..220 score: 8.6
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..220 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33160	Cucumber (Gy14) v1	cgycpiB584
CSPI01G33160	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33160	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33160	Watermelon (97103) v1	cpiwmB020
CSPI01G33160	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33160	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33160	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G33160	Cucumber (Chinese Long) v3	cpicucB000