CSPI01G33140 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33140
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposable element Tf2
Location	Chr1 : 28019380 .. 28020027 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTACCCGATTGAATCGAAGCACAGCTTATCACCCGCAGTCGGATGGCCAAACTGAGGTGGTGAACAGAGGAGTTGAAACTTATATGAGGTGTTTTTGTAGTGAACGACCGAAGGAATGGACAAGGTGGTTGCATTGTGCAGAGTATTTGTACAATACAACGTTCCAGAAATCGTTAGGGGTTACCCCTTTTCAAGCAGTGTACGGCCGGATGCCCCCTCCATTAATATACTATGGTGATCATAAGAGTTCGAATGCAGCACTGGATGATCAGTTAAAGGCACGAGATGAAGCTTTGGGAGCATTAAAAGAGCATCTAAGAATGGGTCAGGACAGAATGAAGAAGAGTGCTCATTTGAAACGAAGAGTCGTGGAGTATGCTGTGGGAGATATGGTATTTTTTAAAATTAGACCATCTAGACAGATATTACTGCCGAAGAAACGAAATGAGAAGTTATCTCCAAAATTTCTTGGCCCCTTTAAAGTAGTAGAACGGATTGGATTGGCATCCTACACATTGGAATTGCCTACAACATCATCCATCCATCCAGTTTTTCATGTGTCGCAGCTGAAAAAAGTGATAGGTAATCACAAGTTGGAGCAGGCTGATGTGATGTCGTTTTTGACTGACAACTACGAATAG

mRNA sequence

ATGGCGGGTACCCGATTGAATCGAAGCACAGCTTATCACCCGCAGTCGGATGGCCAAACTGAGGTGGTGAACAGAGGAGTTGAAACTTATATGAGGTGTTTTTGTAGTGAACGACCGAAGGAATGGACAAGGTGGTTGCATTGTGCAGAGTATTTGTACAATACAACGTTCCAGAAATCGTTAGGGGTTACCCCTTTTCAAGCAGTGTACGGCCGGATGCCCCCTCCATTAATATACTATGGTGATCATAAGAGTTCGAATGCAGCACTGGATGATCAGTTAAAGGCACGAGATGAAGCTTTGGGAGCATTAAAAGAGCATCTAAGAATGGGTCAGGACAGAATGAAGAAGAGTGCTCATTTGAAACGAAGAGTCGTGGAGTATGCTGTGGGAGATATGGTATTTTTTAAAATTAGACCATCTAGACAGATATTACTGCCGAAGAAACGAAATGAGAAGTTATCTCCAAAATTTCTTGGCCCCTTTAAAGTAGTAGAACGGATTGGATTGGCATCCTACACATTGGAATTGCCTACAACATCATCCATCCATCCAGTTTTTCATGTGTCGCAGCTGAAAAAAGTGATAGGTAATCACAAGTTGGAGCAGGCTGATGTGATGTCGTTTTTGACTGACAACTACGAATAG

Coding sequence (CDS)

ATGGCGGGTACCCGATTGAATCGAAGCACAGCTTATCACCCGCAGTCGGATGGCCAAACTGAGGTGGTGAACAGAGGAGTTGAAACTTATATGAGGTGTTTTTGTAGTGAACGACCGAAGGAATGGACAAGGTGGTTGCATTGTGCAGAGTATTTGTACAATACAACGTTCCAGAAATCGTTAGGGGTTACCCCTTTTCAAGCAGTGTACGGCCGGATGCCCCCTCCATTAATATACTATGGTGATCATAAGAGTTCGAATGCAGCACTGGATGATCAGTTAAAGGCACGAGATGAAGCTTTGGGAGCATTAAAAGAGCATCTAAGAATGGGTCAGGACAGAATGAAGAAGAGTGCTCATTTGAAACGAAGAGTCGTGGAGTATGCTGTGGGAGATATGGTATTTTTTAAAATTAGACCATCTAGACAGATATTACTGCCGAAGAAACGAAATGAGAAGTTATCTCCAAAATTTCTTGGCCCCTTTAAAGTAGTAGAACGGATTGGATTGGCATCCTACACATTGGAATTGCCTACAACATCATCCATCCATCCAGTTTTTCATGTGTCGCAGCTGAAAAAAGTGATAGGTAATCACAAGTTGGAGCAGGCTGATGTGATGTCGTTTTTGACTGACAACTACGAATAG

Homology

[Close]

BLAST of CSPI01G33140 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 1


Query: 9    STAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQA 68
            S  Y PQ+DGQTE  N+ VE  +RC CS  P  W   +   +  YN     +  +TPF+ 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 69   VYGRMP--PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLK-RRV 128
            V+   P   PL    +  S +   D+  +   +    +KEHL     +MKK   +K + +
Sbjct: 1134 VHRYSPALSPL----ELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1193

Query: 129  VEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT--SSI 188
             E+  GD+V  K R     L    ++ KL+P F GPF V+++ G  +Y L+LP +     
Sbjct: 1194 EEFQPGDLVMVK-RTKTGFL---HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMF 1253

Query: 189  HPVFHVSQLKKVIGNHKLEQADV 207
               FHVS L+K   N +L  A +
Sbjct: 1254 SSTFHVSHLEKYRHNSELNYATI 1268

[Close]

BLAST of CSPI01G33140 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 1


Query: 9    STAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQA 68
            S  Y PQ+DGQTE  N+ VE  +RC CS  P  W   +   +  YN     +  +TPF+ 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 69   VYGRMP--PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLK-RRV 128
            V+   P   PL    +  S +   D+  +   +    +KEHL     +MKK   +K + +
Sbjct: 1134 VHRYSPALSPL----ELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1193

Query: 129  VEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT--SSI 188
             E+  GD+V  K R     L    ++ KL+P F GPF V+++ G  +Y L+LP +     
Sbjct: 1194 EEFQPGDLVMVK-RTKTGFL---HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMF 1253

Query: 189  HPVFHVSQLKKVIGNHKLEQADV 207
               FHVS L+K   N +L  A +
Sbjct: 1254 SSTFHVSHLEKYRHNSELNYATI 1268

[Close]

BLAST of CSPI01G33140 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 1


Query: 9    STAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQA 68
            S  Y PQ+DGQTE  N+ VE  +RC CS  P  W   +   +  YN     +  +TPF+ 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 69   VYGRMP--PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLK-RRV 128
            V+   P   PL    +  S +   D+  +   +    +KEHL     +MKK   +K + +
Sbjct: 1134 VHRYSPALSPL----ELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1193

Query: 129  VEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT--SSI 188
             E+  GD+V  K R     L    ++ KL+P F GPF V+++ G  +Y L+LP +     
Sbjct: 1194 EEFQPGDLVMVK-RTKTGFL---HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMF 1253

Query: 189  HPVFHVSQLKKVIGNHKLEQADV 207
               FHVS L+K   N +L  A +
Sbjct: 1254 SSTFHVSHLEKYRHNSELNYATI 1268

[Close]

BLAST of CSPI01G33140 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 1


Query: 9    STAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQA 68
            S  Y PQ+DGQTE  N+ VE  +RC CS  P  W   +   +  YN     +  +TPF+ 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 69   VYGRMP--PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLK-RRV 128
            V+   P   PL    +  S +   D+  +   +    +KEHL     +MKK   +K + +
Sbjct: 1134 VHRYSPALSPL----ELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1193

Query: 129  VEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT--SSI 188
             E+  GD+V  K R     L    ++ KL+P F GPF V+++ G  +Y L+LP +     
Sbjct: 1194 EEFQPGDLVMVK-RTKTGFL---HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMF 1253

Query: 189  HPVFHVSQLKKVIGNHKLEQADV 207
               FHVS L+K   N +L  A +
Sbjct: 1254 SSTFHVSHLEKYRHNSELNYATI 1268

[Close]

BLAST of CSPI01G33140 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 1


Query: 9    STAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQA 68
            S  Y PQ+DGQTE  N+ VE  +RC CS  P  W   +   +  YN     +  +TPF+ 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 69   VYGRMP--PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLK-RRV 128
            V+   P   PL    +  S +   D+  +   +    +KEHL     +MKK   +K + +
Sbjct: 1134 VHRYSPALSPL----ELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1193

Query: 129  VEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT--SSI 188
             E+  GD+V  K R     L    ++ KL+P F GPF V+++ G  +Y L+LP +     
Sbjct: 1194 EEFQPGDLVMVK-RTKTGFL---HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMF 1253

Query: 189  HPVFHVSQLKKVIGNHKLEQADV 207
               FHVS L+K   N +L  A +
Sbjct: 1254 SSTFHVSHLEKYRHNSELNYATI 1268

[Close]

BLAST of CSPI01G33140 vs. TrEMBL
Match: A0A087GH17_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 107/198 (54.04%), Postives = 140/198 (70.71%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            +AGT L  STAYHPQSDGQTEV NRG+ETY+RCFCSE+PK+W+ +L  AE  YNT++  +
Sbjct: 893  LAGTHLCFSTAYHPQSDGQTEVTNRGMETYLRCFCSEKPKKWSGYLVWAELSYNTSYHTA 952

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
            + +TPF+AVYGR PP L+ +    + NA L+DQL  RDE LG  ++ L   Q  MK+ A 
Sbjct: 953  IRMTPFKAVYGREPPTLLQFERGSTDNATLEDQLLERDEMLGIQQQQLLRTQQIMKQQAD 1012

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR VE+AVGDMVF KIRP RQ  L ++ NEKL+ ++ GP++V  ++G  +Y L LP T
Sbjct: 1013 NHRREVEFAVGDMVFLKIRPYRQKTLARRANEKLAARYYGPYEVEAKVGPVAYKLRLPPT 1072

Query: 181  SSIHPVFHVSQLKKVIGN 199
              IH  FHVSQLK  +G+
Sbjct: 1073 VKIHHTFHVSQLKAAVGS 1090

[Close]

BLAST of CSPI01G33140 vs. TrEMBL
Match: A0A087HNL4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G163700 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 106/198 (53.54%), Postives = 139/198 (70.20%), Query Frame = 1


Query: 1   MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
           +AGT +  STAYHPQSDGQTEV NRG+ETY+RCFCSE+PK+W+ +L  AE  YNT++  +
Sbjct: 78  LAGTHMCFSTAYHPQSDGQTEVTNRGMETYLRCFCSEKPKKWSGYLTWAELSYNTSYHTA 137

Query: 61  LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
           + +TPF+AVYGR PP LI +    + NA L+DQL  RDE  G L++ L   Q  MK+ A 
Sbjct: 138 IRMTPFKAVYGREPPTLIQFERGSTDNATLEDQLLERDEMPGILQQQLLKTQQIMKQQAD 197

Query: 121 LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
             RR VE+ VGDMVF KIRP RQ  L ++ NEKL+ ++ GP++V  ++G  +Y L LP T
Sbjct: 198 NHRREVEFTVGDMVFLKIRPYRQKTLARRANEKLAARYYGPYEVEAKVGPVAYKLRLPPT 257

Query: 181 SSIHPVFHVSQLKKVIGN 199
             IH  FHVSQLK  +G+
Sbjct: 258 VKIHHTFHVSQLKAAVGS 275

[Close]

BLAST of CSPI01G33140 vs. TrEMBL
Match: Q9SQW9_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.0e-54
Identity = 103/196 (52.55%), Postives = 140/196 (71.43%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            + GT L +STAYHPQ+DGQTEVVNR +E+Y+RCF   RP  W +WL  AEY YNT++  +
Sbjct: 1350 LQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSA 1409

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
               TPFQAVYGR PP L+ YGD  ++NA +++ LK RD  L  L+E+L + Q +MKK+A 
Sbjct: 1410 TKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAAD 1469

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR V + + + V+ K+RP RQ  +  ++NEKLS ++ GPFKV+ RIG  +Y L+LP  
Sbjct: 1470 KSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEH 1529

Query: 181  SSIHPVFHVSQLKKVI 197
            S+IHPVFHVSQLK+ +
Sbjct: 1530 STIHPVFHVSQLKRAV 1545

[Close]

BLAST of CSPI01G33140 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 106/203 (52.22%), Postives = 135/203 (66.50%), Query Frame = 1


Query: 1   MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
           + GT L  STAYH Q+DGQTEVVNR VETY+RCF   +P  W+ W+  AEY YNTTF  S
Sbjct: 733 LQGTSLXHSTAYHXQTDGQTEVVNRCVETYLRCFSYNKPGRWSTWISWAEYWYNTTFHSS 792

Query: 61  LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
              TPF+AVYGR PPPLI +G   +S  A+D  L+ RD  L  LK+HL   Q +MK S  
Sbjct: 793 TNTTPFRAVYGRDPPPLIRFGSDSTSVLAVDQLLQERDLILNELKDHLXCAQSKMKSSXD 852

Query: 121 LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
             R  V++ VGD V+ K+RP     L K+ NEKLSP++ GP+KVV +I   +Y LELP +
Sbjct: 853 AHRXAVQFEVGDFVYIKLRPYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPXS 912

Query: 181 SSIHPVFHVSQLKKVIGNHKLEQ 204
           ++IH VFHVS LK+ +G+  L Q
Sbjct: 913 TTIHXVFHVSXLKRALGSADLCQ 935

[Close]

BLAST of CSPI01G33140 vs. TrEMBL
Match: A0A087G291_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 103/198 (52.02%), Postives = 140/198 (70.71%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            + GT L  STAYHPQSDGQTEV NRG+ETY+RC+CSE+ K+W+ +L+ AE+ YNT+  K+
Sbjct: 1234 LVGTNLCFSTAYHPQSDGQTEVTNRGMETYLRCYCSEQLKKWSSYLNWAEFSYNTSHHKA 1293

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
            + +TPF+AVYGR PP L+ Y +    NA L+ QL  RDE L  +++ L   Q +MK+ A 
Sbjct: 1294 INMTPFKAVYGRDPPTLVQYENGSMDNATLEKQLMERDEMLFIMQQQLLKTQQQMKQQAD 1353

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR VE+AVGDMVF K+RP RQ  L ++ NEKL+ +F GP++V  R+G  +Y L+ P +
Sbjct: 1354 GHRREVEFAVGDMVFLKVRPYRQKTLARRTNEKLAARFYGPYEVEARVGPVAYKLKFPPS 1413

Query: 181  SSIHPVFHVSQLKKVIGN 199
              IH  FHVSQLK  +G+
Sbjct: 1414 VKIHHTFHVSQLKAALGS 1431

[Close]

BLAST of CSPI01G33140 vs. NCBI nr
Match: gi|719968486|ref|XP_010264998.1| (PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 111/215 (51.63%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            + G+ L RS+AYHPQ+DGQ+EVVNR +ETY+RCF ++ P  W+ WL  AEY YNT+F  +
Sbjct: 1354 LQGSELRRSSAYHPQADGQSEVVNRCLETYLRCFAADSPSRWSSWLSWAEYSYNTSFHTA 1413

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
             G+TPF+ VYGR PPPLI Y    ++NA ++  L  RD  LG L+ HL   Q +MK S  
Sbjct: 1414 AGMTPFKVVYGRDPPPLIRYELGSTANADVEAVLLQRDAILGELRTHLHRAQQKMKDSTD 1473

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR V + VGD V+ ++RP RQ  L ++ +EKL+P+F GPF VVERIG  +Y L+LP  
Sbjct: 1474 ANRRDVNFDVGDWVYVRVRPYRQQSLSRRVDEKLAPRFYGPFAVVERIGAVAYKLQLPLD 1533

Query: 181  SSIHPVFHVSQLKKVIGNHKLEQADVMSFLTDNYE 216
            + IH VFHVSQLKK IGNH L    ++S L+ + E
Sbjct: 1534 ARIHLVFHVSQLKKAIGNH-LSSPVILSTLSADTE 1567

[Close]

BLAST of CSPI01G33140 vs. NCBI nr
Match: gi|659121594|ref|XP_008460737.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 108/180 (60.00%), Postives = 137/180 (76.11%), Query Frame = 1


Query: 15  QSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKSLGVTPFQAVYGRMP 74
           Q   + E+ N G E+Y+ CF  ERPKEW RWL  A+Y YNTT+Q++LGVTPFQ VYGR+P
Sbjct: 158 QQKKEKEMKNHGTESYLCCFYGERPKEWVRWLPWAKYWYNTTYQRTLGVTPFQGVYGRLP 217

Query: 75  PPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAHLKRRVVEYAVGDMV 134
           PPLIYYGD ++SN+ LD+ LK RD AL ALKEHL++ Q++MKK   LKRR VEY  GD V
Sbjct: 218 PPLIYYGDREASNSTLDEGLKERDVALEALKEHLQIAQEKMKKYTDLKRRDVEYQAGDTV 277

Query: 135 FFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTTSSIHP---VFHVSQ 192
           F KIR  RQ+ L KKRN+KLSPKF GP+K++E+IG  +Y LELP+TS  HP   +FH+++
Sbjct: 278 FLKIRQYRQVSLRKKRNKKLSPKFFGPYKIIEKIGPIAYKLELPSTS--HPFTQLFHLAR 335

[Close]

BLAST of CSPI01G33140 vs. NCBI nr
Match: gi|674236404|gb|KFK29169.1| (hypothetical protein AALP_AA7G098300 [Arabis alpina])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 107/198 (54.04%), Postives = 140/198 (70.71%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            +AGT L  STAYHPQSDGQTEV NRG+ETY+RCFCSE+PK+W+ +L  AE  YNT++  +
Sbjct: 893  LAGTHLCFSTAYHPQSDGQTEVTNRGMETYLRCFCSEKPKKWSGYLVWAELSYNTSYHTA 952

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
            + +TPF+AVYGR PP L+ +    + NA L+DQL  RDE LG  ++ L   Q  MK+ A 
Sbjct: 953  IRMTPFKAVYGREPPTLLQFERGSTDNATLEDQLLERDEMLGIQQQQLLRTQQIMKQQAD 1012

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR VE+AVGDMVF KIRP RQ  L ++ NEKL+ ++ GP++V  ++G  +Y L LP T
Sbjct: 1013 NHRREVEFAVGDMVFLKIRPYRQKTLARRANEKLAARYYGPYEVEAKVGPVAYKLRLPPT 1072

Query: 181  SSIHPVFHVSQLKKVIGN 199
              IH  FHVSQLK  +G+
Sbjct: 1073 VKIHHTFHVSQLKAAVGS 1090

[Close]

BLAST of CSPI01G33140 vs. NCBI nr
Match: gi|674250951|gb|KFK43716.1| (hypothetical protein AALP_AA1G163700 [Arabis alpina])

HSP 1 Score: 219.5 bits (558), Expect = 5.5e-54
Identity = 106/198 (53.54%), Postives = 139/198 (70.20%), Query Frame = 1


Query: 1   MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
           +AGT +  STAYHPQSDGQTEV NRG+ETY+RCFCSE+PK+W+ +L  AE  YNT++  +
Sbjct: 78  LAGTHMCFSTAYHPQSDGQTEVTNRGMETYLRCFCSEKPKKWSGYLTWAELSYNTSYHTA 137

Query: 61  LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
           + +TPF+AVYGR PP LI +    + NA L+DQL  RDE  G L++ L   Q  MK+ A 
Sbjct: 138 IRMTPFKAVYGREPPTLIQFERGSTDNATLEDQLLERDEMPGILQQQLLKTQQIMKQQAD 197

Query: 121 LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
             RR VE+ VGDMVF KIRP RQ  L ++ NEKL+ ++ GP++V  ++G  +Y L LP T
Sbjct: 198 NHRREVEFTVGDMVFLKIRPYRQKTLARRANEKLAARYYGPYEVEAKVGPVAYKLRLPPT 257

Query: 181 SSIHPVFHVSQLKKVIGN 199
             IH  FHVSQLK  +G+
Sbjct: 258 VKIHHTFHVSQLKAAVGS 275

[Close]

BLAST of CSPI01G33140 vs. NCBI nr
Match: gi|6466937|gb|AAF13073.1|AC011621_1 (putative retroelement pol polyprotein [Arabidopsis thaliana])

HSP 1 Score: 219.2 bits (557), Expect = 7.2e-54
Identity = 103/196 (52.55%), Postives = 140/196 (71.43%), Query Frame = 1


Query: 1    MAGTRLNRSTAYHPQSDGQTEVVNRGVETYMRCFCSERPKEWTRWLHCAEYLYNTTFQKS 60
            + GT L +STAYHPQ+DGQTEVVNR +E+Y+RCF   RP  W +WL  AEY YNT++  +
Sbjct: 1350 LQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSA 1409

Query: 61   LGVTPFQAVYGRMPPPLIYYGDHKSSNAALDDQLKARDEALGALKEHLRMGQDRMKKSAH 120
               TPFQAVYGR PP L+ YGD  ++NA +++ LK RD  L  L+E+L + Q +MKK+A 
Sbjct: 1410 TKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAAD 1469

Query: 121  LKRRVVEYAVGDMVFFKIRPSRQILLPKKRNEKLSPKFLGPFKVVERIGLASYTLELPTT 180
              RR V + + + V+ K+RP RQ  +  ++NEKLS ++ GPFKV+ RIG  +Y L+LP  
Sbjct: 1470 KSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEH 1529

Query: 181  SSIHPVFHVSQLKKVI 197
            S+IHPVFHVSQLK+ +
Sbjct: 1530 STIHPVFHVSQLKRAV 1545

The following BLAST results are available for this feature:

BLAST of CSPI01G33140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF28_SCHPO	8.0e-21	32.51	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	8.0e-21	32.51	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF25_SCHPO	8.0e-21	32.51	Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF24_SCHPO	8.0e-21	32.51	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	8.0e-21	32.51	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI01G33140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087GH17_ARAAL	1.3e-54	54.04	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1	[more]
A0A087HNL4_ARAAL	3.8e-54	53.54	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G163700 PE=4 SV=1	[more]
Q9SQW9_ARATH	5.0e-54	52.55	Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV...	[more]
A5CAG1_VITVI	1.5e-53	52.22	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1	[more]
A0A087G291_ARAAL	2.5e-53	52.02	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1	[more]

BLAST of CSPI01G33140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|719968486\|ref\|XP_010264998.1\|	3.5e-56	51.63	PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]	[more]
gi\|659121594\|ref\|XP_008460737.1\|	1.3e-55	60.00	PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Cucumis melo]	[more]
gi\|674236404\|gb\|KFK29169.1\|	1.9e-54	54.04	hypothetical protein AALP_AA7G098300 [Arabis alpina]	[more]
gi\|674250951\|gb\|KFK43716.1\|	5.5e-54	53.54	hypothetical protein AALP_AA1G163700 [Arabis alpina]	[more]
gi\|6466937\|gb\|AAF13073.1\|AC011621_1	7.2e-54	52.55	putative retroelement pol polyprotein [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33140.1	CSPI01G33140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 2..73 score: 5.4
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 2..71 score: 1.04
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 2..215 score: 2.2
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 2..215 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33140	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33140	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33140	Watermelon (97103) v1	cpiwmB020
CSPI01G33140	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33140	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33140	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G33140	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G33140	Cucumber (Gy14) v1	cgycpiB584