CSPI01G33090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G33090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 27989364 .. 27990160 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATGGTCCAAGAGAGTGTTCATTTTTGCCGGTGCCTGTCAAGAAATTTATTGAGCCAATTAAAGTGTACTTGTGAAGAGGGCTTGTCGAAGTTGGAGGTTAGTATCGTGAAGAAGTTGGAATCGTCTCTGGAATGCATTTTTCTTGCAGGTCAGGCAAGTGGGTTTCCTCCCAACTCCTATTTGGTGGACAGCTCGTGCGGCGGGACATATCAGGTAAGTCCTCTTTCTTTGGTTTCTTGTTCTCCAGGGAGTTTGGGAGAGTCTAAGAGAGGAGGTGGTGTCTTTTCTCCTAATTTTGTGTCATCGATAATTGGTAATTGGAGTGGAGGTGTTCGTCAGTTAGGAGTCAAATGTTTTTCCTCTCTTGTCTTTTTGAATCCATATCCTTATTAAGGTTATTCGGATTGTGCCTTACTTCTTGTGCCTCTCAATTCCTTAGGAGAGAGGTGGTCAGTGCTTAATCATATGGTCTAAGCGAGTGTCGGTTCAAGAGGCAGTGGAGGGCCCTTACCAACGACTACTTCGTGGGTATTTTATTAGGCCATCAAACCCTCTCGAAAACATTGGGTGCCTTGCTTGGTGAAGTTAAAAATGATGAGAGGTGGGACATTTTGGTTTCAACGGATATTAAGGGAGTGGAGGCTAAAGAAGGTAAAAATGGTAAGGATGACATTAAGTTGTCTGTGGAGGAGGGAGGTGTTAAGTTGAAACGTAAGGAGGGTAGTGACAATCTGTCTAGGGAATTAAAAAAACTGGACAGTTTGGTGAACTATGGGGGCAAGAAAGCCTAA

mRNA sequence

ATGAGGATGGTCCAAGAGAGTGTTCATTTTTGCCGGTGCCTGTCAAGAAATTTATTGAGCCAATTAAAGTGTACTTGTGAAGAGGGCTTGTCGAAGTTGGAGGTTAGTATCGTGAAGAAGTTGGAATCGTCTCTGGAATGCATTTTTCTTGCAGGTCAGGCAAGTGGGTTTCCTCCCAACTCCTATTTGGTGGACAGCTCGTGCGGCGGGACATATCAGAGGCAGTGGAGGGCCCTTACCAACGACTACTTCGTGGGTATTTTATTAGGCCATCAAACCCTCTCGAAAACATTGGGTGCCTTGCTTGGTGAAGTTAAAAATGATGAGAGGTGGGACATTTTGGTTTCAACGGATATTAAGGGAGTGGAGGCTAAAGAAGGTAAAAATGGTAAGGATGACATTAAGTTGTCTGTGGAGGAGGGAGGTGTTAAGTTGAAACGTAAGGAGGGTAGTGACAATCTGTCTAGGGAATTAAAAAAACTGGACAGTTTGGTGAACTATGGGGGCAAGAAAGCCTAA

Coding sequence (CDS)

ATGAGGATGGTCCAAGAGAGTGTTCATTTTTGCCGGTGCCTGTCAAGAAATTTATTGAGCCAATTAAAGTGTACTTGTGAAGAGGGCTTGTCGAAGTTGGAGGTTAGTATCGTGAAGAAGTTGGAATCGTCTCTGGAATGCATTTTTCTTGCAGGTCAGGCAAGTGGGTTTCCTCCCAACTCCTATTTGGTGGACAGCTCGTGCGGCGGGACATATCAGAGGCAGTGGAGGGCCCTTACCAACGACTACTTCGTGGGTATTTTATTAGGCCATCAAACCCTCTCGAAAACATTGGGTGCCTTGCTTGGTGAAGTTAAAAATGATGAGAGGTGGGACATTTTGGTTTCAACGGATATTAAGGGAGTGGAGGCTAAAGAAGGTAAAAATGGTAAGGATGACATTAAGTTGTCTGTGGAGGAGGGAGGTGTTAAGTTGAAACGTAAGGAGGGTAGTGACAATCTGTCTAGGGAATTAAAAAAACTGGACAGTTTGGTGAACTATGGGGGCAAGAAAGCCTAA
Homology
[Close]
BLAST of CSPI01G33090 vs. TrEMBL
Match: A0A0A0LY03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-34
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 84  FVGILLGHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV 143
           FV  ++GHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV
Sbjct: 390 FVSSIIGHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV 449

Query: 144 KLKRKEGSDNLSRELKKLDSL 165
           KLKRKEGSDNLSRELKKLDSL
Sbjct: 450 KLKRKEGSDNLSRELKKLDSL 470

[Close]
BLAST of CSPI01G33090 vs. TrEMBL
Match: A0A0A0KNA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453180 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-09
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 99  GALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGVKLKRKEGSDNLSREL 158
           GAL+GEVKNDERW+++ S                         GVKLKRK GSD+LSREL
Sbjct: 37  GALVGEVKNDERWEVMGSA------------------------GVKLKRKGGSDSLSREL 86

Query: 159 KKLDSLVNYGGKKA 173
           KKLDS VN GGKKA
Sbjct: 97  KKLDSSVNCGGKKA 86

[Close]
BLAST of CSPI01G33090 vs. NCBI nr
Match: gi|700211649|gb|KGN66745.1| (hypothetical protein Csa_1G673520 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 84  FVGILLGHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV 143
           FV  ++GHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV
Sbjct: 390 FVSSIIGHQTLSKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGV 449

Query: 144 KLKRKEGSDNLSRELKKLDSL 165
           KLKRKEGSDNLSRELKKLDSL
Sbjct: 450 KLKRKEGSDNLSRELKKLDSL 470

[Close]
BLAST of CSPI01G33090 vs. NCBI nr
Match: gi|700195933|gb|KGN51110.1| (hypothetical protein Csa_5G453180 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-09
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 99  GALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGVKLKRKEGSDNLSREL 158
           GAL+GEVKNDERW+++ S                         GVKLKRK GSD+LSREL
Sbjct: 37  GALVGEVKNDERWEVMGSA------------------------GVKLKRKGGSDSLSREL 86

Query: 159 KKLDSLVNYGGKKA 173
           KKLDS VN GGKKA
Sbjct: 97  KKLDSSVNCGGKKA 86

The following BLAST results are available for this feature:
BLAST of CSPI01G33090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G33090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY03_CUCSA7.9e-3495.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673520 PE=4 SV=1[more]
A0A0A0KNA2_CUCSA5.1e-0954.05Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453180 PE=4 SV=1[more]
BLAST of CSPI01G33090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G33090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211649|gb|KGN66745.1|1.1e-3395.06hypothetical protein Csa_1G673520 [Cucumis sativus][more]
gi|700195933|gb|KGN51110.1|7.4e-0954.05hypothetical protein Csa_5G453180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33090.1CSPI01G33090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G33090Csa1G673520Cucumber (Chinese Long) v2cpicuB001
CSPI01G33090CsGy1G031880Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G33090Cucumber (Chinese Long) v3cpicucB000
CSPI01G33090Cucumber (Gy14) v1cgycpiB584
CSPI01G33090Melon (DHL92) v3.5.1cpimeB044
CSPI01G33090Watermelon (97103) v1cpiwmB020
CSPI01G33090Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G33090Melon (DHL92) v3.6.1cpimedB038