CSPI01G30660 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G30660
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 25173926 .. 25174292 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGGTTAGTGGGTATAGTAAAGAAGCAAAAAGGCAAGAGAAAATGGAAGAAAAATCCAAAAGGGAAAAAGGTGTCGGTACTTGAAAAGCGTTGGGTGGGTTTCCTCTGTTTTGATCATAAGTTTGTGAATTGAATTGAATTGAATTCTGTAAGTTGTGTTGTGGTTGTGGGTGAGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA

mRNA sequence

ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA

Coding sequence (CDS)

ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA
Homology
[Close]
BLAST of CSPI01G30660 vs. TrEMBL
Match: A0A0A0M2V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616340 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 1  MKLKEEERDEEDEEDEEEDEEDE--EEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60
          MKLKEEERDEEDEEDEEEDEE+E  EEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY
Sbjct: 1  MKLKEEERDEEDEEDEEEDEEEESEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60

Query: 61 DGFVLI 65
          DGFVLI
Sbjct: 61 DGFVLI 66

[Close]
BLAST of CSPI01G30660 vs. NCBI nr
Match: gi|700211420|gb|KGN66516.1| (hypothetical protein Csa_1G616340 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 1  MKLKEEERDEEDEEDEEEDEEDE--EEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60
          MKLKEEERDEEDEEDEEEDEE+E  EEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY
Sbjct: 1  MKLKEEERDEEDEEDEEEDEEEESEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60

Query: 61 DGFVLI 65
          DGFVLI
Sbjct: 61 DGFVLI 66

The following BLAST results are available for this feature:
BLAST of CSPI01G30660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G30660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2V7_CUCSA1.1e-1795.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616340 PE=4 SV=1[more]
BLAST of CSPI01G30660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G30660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211420|gb|KGN66516.1|1.6e-1795.45hypothetical protein Csa_1G616340 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G30660.1CSPI01G30660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..34
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G30660Csa1G616340Cucumber (Chinese Long) v2cpicuB001
CSPI01G30660CsaV3_1G043120Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G30660Cucumber (Chinese Long) v3cpicucB056
CSPI01G30660Watermelon (97103) v2cpiwmbB028
CSPI01G30660Watermelon (97103) v2cpiwmbB043
CSPI01G30660Wax gourdcpiwgoB021
CSPI01G30660Wax gourdcpiwgoB100
CSPI01G30660Wild cucumber (PI 183967)cpicpiB045
CSPI01G30660Cucumber (Gy14) v1cgycpiB041
CSPI01G30660Cucumber (Gy14) v1cgycpiB166
CSPI01G30660Cucurbita maxima (Rimu)cmacpiB084
CSPI01G30660Cucurbita maxima (Rimu)cmacpiB058
CSPI01G30660Cucurbita maxima (Rimu)cmacpiB543
CSPI01G30660Cucurbita moschata (Rifu)cmocpiB050
CSPI01G30660Cucurbita moschata (Rifu)cmocpiB078
CSPI01G30660Cucurbita moschata (Rifu)cmocpiB534
CSPI01G30660Melon (DHL92) v3.5.1cpimeB042
CSPI01G30660Melon (DHL92) v3.5.1cpimeB071
CSPI01G30660Watermelon (Charleston Gray)cpiwcgB037
CSPI01G30660Watermelon (Charleston Gray)cpiwcgB049
CSPI01G30660Watermelon (97103) v1cpiwmB022
CSPI01G30660Watermelon (97103) v1cpiwmB076
CSPI01G30660Cucurbita pepo (Zucchini)cpecpiB268
CSPI01G30660Cucurbita pepo (Zucchini)cpecpiB350
CSPI01G30660Cucurbita pepo (Zucchini)cpecpiB655
CSPI01G30660Bottle gourd (USVL1VR-Ls)cpilsiB003
CSPI01G30660Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G30660Melon (DHL92) v3.6.1cpimedB036
CSPI01G30660Melon (DHL92) v3.6.1cpimedB064
CSPI01G30660Cucumber (Gy14) v2cgybcpiB002
CSPI01G30660Cucumber (Gy14) v2cgybcpiB251
CSPI01G30660Silver-seed gourdcarcpiB0462
CSPI01G30660Silver-seed gourdcarcpiB0506
CSPI01G30660Silver-seed gourdcarcpiB0558