CSPI01G27290 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G27290
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 22171102 .. 22171278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAAGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCACCCCGATAAGTTGGATATGGGCGTTACAAGTTCCGAGAGAAAAAGAAAACAT

mRNA sequence

ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAAGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCACCCCGATAAGTTGGATATGGGCGTTACAAGTTCCGAGAGAAAAAGAAAACAT

Coding sequence (CDS)

ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAAGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCACCCCGATAAGTTGGATATGGGCGTTACAAGTTCCGAGAGAAAAAGAAAACAT
Homology
[Close]
BLAST of CSPI01G27290 vs. TrEMBL
Match: A0A0A0LW73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573690 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-22
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 1  MGVDIELHKYGIENRESELKQALQQCNSLSKSGLISVKSSSHPDKLDMGVTSSERKRKH 60
          MGVDIELHKYGIENRE ELKQALQQCNSLSKSGLISVKSSS PDKLDMGVTSS+RKRKH
Sbjct: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59

[Close]
BLAST of CSPI01G27290 vs. NCBI nr
Match: gi|700211054|gb|KGN66150.1| (hypothetical protein Csa_1G573690 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 1  MGVDIELHKYGIENRESELKQALQQCNSLSKSGLISVKSSSHPDKLDMGVTSSERKRKH 60
          MGVDIELHKYGIENRE ELKQALQQCNSLSKSGLISVKSSS PDKLDMGVTSS+RKRKH
Sbjct: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59

[Close]
BLAST of CSPI01G27290 vs. NCBI nr
Match: gi|659098855|ref|XP_008450324.1| (PREDICTED: UPF0202 protein At1g10490-like isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 1    MGV-DIELHKYGIENRESELKQALQQCNSLSKSGLISVKSS-SHPDKLDMGVTSSERKRK 60
            MGV D++L KYGIENRE+ELKQALQQCNSLSKSGLISVKSS + P KLDM VTSS+RKRK
Sbjct: 959  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1018

[Close]
BLAST of CSPI01G27290 vs. NCBI nr
Match: gi|659098857|ref|XP_008450325.1| (PREDICTED: UPF0202 protein At1g10490-like isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 1    MGV-DIELHKYGIENRESELKQALQQCNSLSKSGLISVKSS-SHPDKLDMGVTSSERKRK 60
            MGV D++L KYGIENRE+ELKQALQQCNSLSKSGLISVKSS + P KLDM VTSS+RKRK
Sbjct: 947  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1006

[Close]
BLAST of CSPI01G27290 vs. NCBI nr
Match: gi|659099731|ref|XP_008450749.1| (PREDICTED: UPF0202 protein At1g10490-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-15
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 1    MGV-DIELHKYGIENRESELKQALQQCNSLSKSGLISVKSS-SHPDKLDMGVTSSERKRK 60
            MGV DIEL +YGIENRE+ELKQALQQC+SLSKSGLISVKSS + P KLDM VTSS+RKRK
Sbjct: 947  MGVEDIELQEYGIENREAELKQALQQCSSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1006

The following BLAST results are available for this feature:
BLAST of CSPI01G27290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G27290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW73_CUCSA9.0e-2294.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573690 PE=4 SV=1[more]
BLAST of CSPI01G27290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G27290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211054|gb|KGN66150.1|1.3e-2194.92hypothetical protein Csa_1G573690 [Cucumis sativus][more]
gi|659098855|ref|XP_008450324.1|1.1e-1581.97PREDICTED: UPF0202 protein At1g10490-like isoform X1 [Cucumis melo][more]
gi|659098857|ref|XP_008450325.1|1.1e-1581.97PREDICTED: UPF0202 protein At1g10490-like isoform X2 [Cucumis melo][more]
gi|659099731|ref|XP_008450749.1|4.0e-1581.97PREDICTED: UPF0202 protein At1g10490-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G27290.1CSPI01G27290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 12..32
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G27290Csa1G573690Cucumber (Chinese Long) v2cpicuB001
CSPI01G27290CsaV3_1G039590Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G27290Watermelon (97103) v2cpiwmbB043
CSPI01G27290Cucumber (Gy14) v1cgycpiB437
CSPI01G27290Cucurbita maxima (Rimu)cmacpiB095
CSPI01G27290Cucurbita moschata (Rifu)cmocpiB087
CSPI01G27290Melon (DHL92) v3.5.1cpimeB042
CSPI01G27290Watermelon (Charleston Gray)cpiwcgB033
CSPI01G27290Watermelon (Charleston Gray)cpiwcgB049
CSPI01G27290Watermelon (97103) v1cpiwmB022
CSPI01G27290Watermelon (97103) v1cpiwmB074
CSPI01G27290Cucurbita pepo (Zucchini)cpecpiB648
CSPI01G27290Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G27290Melon (DHL92) v3.6.1cpimedB036
CSPI01G27290Cucumber (Gy14) v2cgybcpiB002
CSPI01G27290Silver-seed gourdcarcpiB0950