CSPI01G26890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G26890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21914840 .. 21915013 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAACTAGAACCAATAAAACAACTAAATCCAACAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTAGGGACGACGGCGGCAGGCAGGCAGGAGGGTCGGGCGGCTGGAGCTGTGGGCAGCACGATGGCTGA

mRNA sequence

ATGACTCAACTAGAACCAATAAAACAACTAAATCCAACAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTAGGGACGACGGCGGCAGGCAGGCAGGAGGGTCGGGCGGCTGGAGCTGTGGGCAGCACGATGGCTGA

Coding sequence (CDS)

ATGACTCAACTAGAACCAATAAAACAACTAAATCCAACAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTAGGGACGACGGCGGCAGGCAGGCAGGAGGGTCGGGCGGCTGGAGCTGTGGGCAGCACGATGGCTGA
Homology
[Close]
BLAST of CSPI01G26890 vs. TrEMBL
Match: A0A0A0LWH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G571800 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.4e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 1  MTQLEPIKQLNPTVTTKTKEIDSTYFAIRRQQDWRRRDDGGRQAGGS 48
          MTQLEPIKQLNP VTTKTKEIDSTYFAIRRQQDWRR DDGGRQAGG+
Sbjct: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGA 47

[Close]
BLAST of CSPI01G26890 vs. NCBI nr
Match: gi|700211012|gb|KGN66108.1| (hypothetical protein Csa_1G571800 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 1  MTQLEPIKQLNPTVTTKTKEIDSTYFAIRRQQDWRRRDDGGRQAGGS 48
          MTQLEPIKQLNP VTTKTKEIDSTYFAIRRQQDWRR DDGGRQAGG+
Sbjct: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGA 47

The following BLAST results are available for this feature:
BLAST of CSPI01G26890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G26890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWH9_CUCSA9.4e-1693.62Uncharacterized protein OS=Cucumis sativus GN=Csa_1G571800 PE=4 SV=1[more]
BLAST of CSPI01G26890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G26890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211012|gb|KGN66108.1|1.4e-1593.62hypothetical protein Csa_1G571800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G26890.1CSPI01G26890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G26890Csa1G571800Cucumber (Chinese Long) v2cpicuB001
CSPI01G26890CsaV3_1G039240Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G26890Watermelon (97103) v2cpiwmbB043
CSPI01G26890Wax gourdcpiwgoB084
CSPI01G26890Cucumber (Gy14) v1cgycpiB252
CSPI01G26890Cucurbita maxima (Rimu)cmacpiB100
CSPI01G26890Cucurbita moschata (Rifu)cmocpiB092
CSPI01G26890Melon (DHL92) v3.5.1cpimeB042
CSPI01G26890Watermelon (Charleston Gray)cpiwcgB049
CSPI01G26890Watermelon (97103) v1cpiwmB022
CSPI01G26890Cucurbita pepo (Zucchini)cpecpiB003
CSPI01G26890Cucurbita pepo (Zucchini)cpecpiB659
CSPI01G26890Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G26890Melon (DHL92) v3.6.1cpimedB036
CSPI01G26890Cucumber (Gy14) v2cgybcpiB002
CSPI01G26890Silver-seed gourdcarcpiB0586