CSPI01G26200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G26200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 21518410 .. 21519588 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGTGTGACGGCCCCTTAAATATAAAGGTATCAATGTAATCATCTTATTAAATGATTTGGCAGATTATATTAATTTTCATATGTAAATGAATAGATTCTTGGAGAGAAAATGTCGATAGAGTTGTGGAAAAAGATTGTTGAGCATGCTAAGCAATGTGTTGGTTATGATCCAACTCATTATCGTCAAATCTTACAGGTTTATTTCAGCTACTCTCTTTCACATTCTTTCTCTATCTGATCTATTATTCAAATGAAACTTGAAACTTAGTACTAATGTTTTGTGCCAAAAACAGGCTAATGATTGTCATGCCGATAGCAATCATAACTCAGAAGTTCATAATTCTCAAAATCAAAGTGTTGAGGTTAGTTATATTTCTTTGATATATGTAATTAAAAAAATTCTTCTTCAGCTATAAACTTAATCTTTTAGGTCGGTTGATGGGTGATGATTTAGAACTCTTTTTATTCATATTACATGCCAAGAATAGGACAATAATAATAATTTGGTGGAGACTGAACAACTAGCTAATTCCAATCATAATTTAGAAGTTCATAATTCCCAAAATCAAAGTGTTGAGGTTAATGATTTTAAATCAAAGTGGTAAGGTTAATGATTTTTTTTCTCTCTCTACTGTAATCTGATGATATATTAACTCTTTATGTTCATATTATATGTCAAAAGCAAGATAATTAATAATAAGAAGTTGGTGAGAACTCAACAGCTAGGTAATTCTAGTCATAATTTAGAATTTCATAATCATCAAAATCAAAGCGTTGAGGTTAGTGATTTCTCTTATCATTGTTGTTTGATGATATATGATTAATAAAATTCTTCTTCACCCATGATCAACTTAAACTTCTAGTTCGATTGATAATTTAAGACCATTTTTATTTGGTGGAAACTGAACTACTAGTTAATTCCAACATTAATTCAGAAGTTCATGATGGCCAAAATCAAAGTCTGTCAAGGTTACTCTATTTTTCTTTCTTTCTCTCTATAATATTTATTCCTGAACTAAACTTAGTTAATATATAATTATATGCCAAAAACAGACCAATCATTTTGGGGAAGCTGAGGTGGAAGCTAATGATTCCAACCAGAATTTTAAAACTCATCAGCAAAATCAAAATCTTCATGAGGTCAAAGGTTTATATATTGGTATAATCTTATAC

mRNA sequence

ATGGGTGTGTGTGACGGCCCCTTAAATATAAAGATTCTTGGAGAGAAAATGTCGATAGAGTTGTGGAAAAAGATTGTTGAGCATGCTAAGCAATGTGTTGGTTATGATCCAACTCATTATCGTCAAATCTTACAGGCTAATGATTGTCATGCCGATAGCAATCATAACTCAGAAGTTCATAATTCTCAAAATCAAAGTGTTGAGACCAATCATTTTGGGGAAGCTGAGGTGGAAGCTAATGATTCCAACCAGAATTTTAAAACTCATCAGCAAAATCAAAATCTTCATGAGGTCAAAGGTTTATATATTGGTATAATCTTATAC

Coding sequence (CDS)

ATGGGTGTGTGTGACGGCCCCTTAAATATAAAGATTCTTGGAGAGAAAATGTCGATAGAGTTGTGGAAAAAGATTGTTGAGCATGCTAAGCAATGTGTTGGTTATGATCCAACTCATTATCGTCAAATCTTACAGGCTAATGATTGTCATGCCGATAGCAATCATAACTCAGAAGTTCATAATTCTCAAAATCAAAGTGTTGAGACCAATCATTTTGGGGAAGCTGAGGTGGAAGCTAATGATTCCAACCAGAATTTTAAAACTCATCAGCAAAATCAAAATCTTCATGAGGTCAAAGGTTTATATATTGGTATAATCTTATAC

Homology

[Close]

BLAST of CSPI01G26200 vs. TrEMBL
Match: A0A0A0LWC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569160 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 11  KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 70
           +ILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN
Sbjct: 176 RILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 235

Query: 71  HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 109
           HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY
Sbjct: 236 HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 273

[Close]

BLAST of CSPI01G26200 vs. TrEMBL
Match: A0A0A0LVZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 24  KIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETNHFGEAEVEANDSN 83
           ++  H  Q V  D  ++  I Q     A+SNHN EV+  QNQ+VETNHF + EVEAN S 
Sbjct: 166 EVHNHQFQSVEDDNNNFVGIEQL----ANSNHNCEVYVDQNQNVETNHFEDGEVEANGSY 225

Query: 84  QNFKTHQQNQNLHEVK 100
           QNF+  QQ+QNLHE K
Sbjct: 226 QNFEVPQQSQNLHEEK 237

[Close]

BLAST of CSPI01G26200 vs. NCBI nr
Match: gi|778662348|ref|XP_011659781.1| (PREDICTED: uncharacterized protein LOC105436267 isoform X2 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 11  KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 70
           KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN
Sbjct: 228 KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 287

Query: 71  HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 109
           HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY
Sbjct: 288 HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 325

[Close]

BLAST of CSPI01G26200 vs. NCBI nr
Match: gi|700210942|gb|KGN66038.1| (hypothetical protein Csa_1G569160 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 11  KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 70
           +ILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN
Sbjct: 176 RILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 235

Query: 71  HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 109
           HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY
Sbjct: 236 HFGEAEVEANDSNQNFKTHQQNQNLHEVKGLYIGIILY 273

[Close]

BLAST of CSPI01G26200 vs. NCBI nr
Match: gi|778662337|ref|XP_011659766.1| (PREDICTED: uncharacterized protein LOC105436267 isoform X1 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 11  KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 70
           KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN
Sbjct: 228 KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 287

Query: 71  HFGEAEVEANDSNQNFKTHQQNQNLHEVK 100
           HFGEAEVEANDSNQNFKTHQQNQNLHE K
Sbjct: 288 HFGEAEVEANDSNQNFKTHQQNQNLHEEK 316

[Close]

BLAST of CSPI01G26200 vs. NCBI nr
Match: gi|778662351|ref|XP_011659784.1| (PREDICTED: uncharacterized protein LOC105436267 isoform X3 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 11  KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETN 70
           KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVE  
Sbjct: 228 KILGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVEEK 287

Query: 71  HFGEA 76
            +G++
Sbjct: 288 KYGDS 292

[Close]

BLAST of CSPI01G26200 vs. NCBI nr
Match: gi|778662354|ref|XP_011659790.1| (PREDICTED: uncharacterized protein LOC105436280 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 13  LGEKMSIELWKKIVEHAKQCVGYDPTHYRQILQANDCHADSNHNSEVHNSQNQSVETNHF 72
           LG+KMS E+W+KIV HAKQC GYDPTHY   LQA+D  AD+NHNSEVHN QNQSVE N+ 
Sbjct: 354 LGDKMSKEMWEKIVGHAKQCEGYDPTHYLPTLQADDHRADTNHNSEVHNPQNQSVEDNNN 413

Query: 73  GEA---EVEANDSNQNFKTH-QQNQNLHEVK 100
             +   E +  +SN N + H  QNQ++ E K
Sbjct: 414 NNSVGTEQQLPNSNHNSEVHNDQNQDVKEKK 444

The following BLAST results are available for this feature:

BLAST of CSPI01G26200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G26200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWC4_CUCSA	2.1e-48	98.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569160 PE=4 SV=1	[more]
A0A0A0LVZ0_CUCSA	3.0e-07	51.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569180 PE=4 SV=1	[more]

BLAST of CSPI01G26200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G26200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662348\|ref\|XP_011659781.1\|	1.3e-48	100.00	PREDICTED: uncharacterized protein LOC105436267 isoform X2 [Cucumis sativus]	[more]
gi\|700210942\|gb\|KGN66038.1\|	3.0e-48	98.98	hypothetical protein Csa_1G569160 [Cucumis sativus]	[more]
gi\|778662337\|ref\|XP_011659766.1\|	1.4e-42	98.88	PREDICTED: uncharacterized protein LOC105436267 isoform X1 [Cucumis sativus]	[more]
gi\|778662351\|ref\|XP_011659784.1\|	7.1e-26	90.77	PREDICTED: uncharacterized protein LOC105436267 isoform X3 [Cucumis sativus]	[more]
gi\|778662354\|ref\|XP_011659790.1\|	7.8e-17	58.24	PREDICTED: uncharacterized protein LOC105436280 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G26200.1	CSPI01G26200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G26200	Csa1G569160	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G26200	CsaV3_1G038570	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G26200	Cucsa.181680	Cucumber (Gy14) v1	cgycpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G26200	Wax gourd	cpiwgoB016
CSPI01G26200	Wax gourd	cpiwgoB084
CSPI01G26200	Wild cucumber (PI 183967)	cpicpiB013
CSPI01G26200	Wild cucumber (PI 183967)	cpicpiB021
CSPI01G26200	Cucurbita maxima (Rimu)	cmacpiB061
CSPI01G26200	Cucurbita moschata (Rifu)	cmocpiB055
CSPI01G26200	Cucumber (Chinese Long) v2	cpicuB023
CSPI01G26200	Cucumber (Chinese Long) v2	cpicuB029
CSPI01G26200	Melon (DHL92) v3.5.1	cpimeB042
CSPI01G26200	Melon (DHL92) v3.5.1	cpimeB073
CSPI01G26200	Melon (DHL92) v3.5.1	cpimeB080
CSPI01G26200	Watermelon (Charleston Gray)	cpiwcgB043
CSPI01G26200	Watermelon (Charleston Gray)	cpiwcgB049
CSPI01G26200	Watermelon (Charleston Gray)	cpiwcgB069
CSPI01G26200	Watermelon (97103) v1	cpiwmB014
CSPI01G26200	Watermelon (97103) v1	cpiwmB041
CSPI01G26200	Watermelon (97103) v1	cpiwmB073
CSPI01G26200	Cucurbita pepo (Zucchini)	cpecpiB088
CSPI01G26200	Cucurbita pepo (Zucchini)	cpecpiB354
CSPI01G26200	Cucurbita pepo (Zucchini)	cpecpiB808
CSPI01G26200	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G26200	Melon (DHL92) v3.6.1	cpimedB036
CSPI01G26200	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G26200	Cucumber (Chinese Long) v3	cpicucB033
CSPI01G26200	Watermelon (97103) v2	cpiwmbB036