CSPI01G26140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G26140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21475562 .. 21475792 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGAGTACAAATGGTCCTCTAGCCATTGCTATCACGAGATTATACGCTTTATCTCAAGCCAAAAACAGTTTGGTAAAAGAGTTGTGGAATCCAACGGATAAGAAATGGGACATAAAGCCGCATAGGCCACTAAATGATAGAGAAATATTGGACTCTGGAATCAGATCTCTTCAAAGCTTCCTTATCCGAATGAAGACAAAGGTATGTGCAAACCGAATTGGAAGC

mRNA sequence

ATGGATTGGAGTACAAATGGTCCTCTAGCCATTGCTATCACGAGATTATACGCTTTATCTCAAGCCAAAAACAGTTTGGTAAAAGAGTTGTGGAATCCAACGGATAAGAAATGGGACATAAAGCCGCATAGGCCACTAAATGATAGAGAAATATTGGACTCTGGAATCAGATCTCTTCAAAGCTTCCTTATCCGAATGAAGACAAAGGTATGTGCAAACCGAATTGGAAGC

Coding sequence (CDS)

ATGGATTGGAGTACAAATGGTCCTCTAGCCATTGCTATCACGAGATTATACGCTTTATCTCAAGCCAAAAACAGTTTGGTAAAAGAGTTGTGGAATCCAACGGATAAGAAATGGGACATAAAGCCGCATAGGCCACTAAATGATAGAGAAATATTGGACTCTGGAATCAGATCTCTTCAAAGCTTCCTTATCCGAATGAAGACAAAGGTATGTGCAAACCGAATTGGAAGC
Homology
[Close]
BLAST of CSPI01G26140 vs. NCBI nr
Match: gi|778665284|ref|XP_011648530.1| (PREDICTED: uncharacterized protein LOC101206429 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MDWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREILDSGIRSLQ 60
          MD STNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREILDSGIRSLQ
Sbjct: 1  MDRSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREILDSGIRSLQ 60

Query: 61 SFLIRMKTKV 71
          +FLIRMKTKV
Sbjct: 61 TFLIRMKTKV 70

[Close]
BLAST of CSPI01G26140 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-06
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 2   DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE 51
           +W+ N PL++A+ RL+ALS  K   VKE WNP+   W +  +RPL D E
Sbjct: 136 NWNGNAPLSLAVPRLFALSTNKKGTVKEFWNPSSNDWHLHINRPLRDHE 184

The following BLAST results are available for this feature:
BLAST of CSPI01G26140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G26140 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI01G26140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G26140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665284|ref|XP_011648530.1|1.2e-3097.14PREDICTED: uncharacterized protein LOC101206429 [Cucumis sativus][more]
gi|659122972|ref|XP_008461420.1|7.6e-0646.94PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G26140.1CSPI01G26140.1mRNA