CSPI01G26100 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G26100
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 21442007 .. 21444038 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATACTATTTTTCGCCGGGTAATTTTAATCTCTTTGATCTCTATCTCTTTTCTAAGAGTAATTTTCTTTTCATGATCTCTCTCTTCTTGAGAGTATTATGAATGTGTCAACTTAGTTTAGATATTCGGTACACGTACATCCATTTATTCCTTCATCCGTCTTGTTCTTGTTTTAAACACCCAACAATTATCGTCATAACCATTCGATCTGTAGATACCCTTAGTTTCATCTTTGATTGTAACAAATGAGAGGTAATTAGAGGTATCAAAATCGTAACCCTTGAGTTTATTAGATAACAAAATGTTTTATTTCAACATCAAATATTGACTCTGAGTATCCTCGGTATGTGTTATAGACATCATCAGATCTCTTGATTTTTTCAATAGGATCTTCAACCAAACTCTGGTTGATTTTTTTTACCTCATTGAAATGACTTCTTCCTCTCCCCAATTGAACCTATCTATAATTTTGTTCTCTCACTAAACTCCACAAATTATGTCCAGTGGGAAATTCCAAAAGTTTACCATTTTCAAAACAAATCGTGATCACTTTTTGCACTATCAAGATTCAAAGTTGTTTCATTATTTTTTTTTTTCCTTTTCAGGTCAGTAAGGAATTTGATAGAAAGCTTCTGTCGTCTTACACTGATCAATTTCTTCTATCGTTATCTTCAAGGTTAATTTCTATTTTTTAGAAAAAAAATTTAATTACTTCTCATTGTTTGCTTTCAAACTCCTAATTAATTAATATCTTTGCACTGTTTTGTTTCACTTTATCATTATTTCTTTCAGCGCTATCCAACGAAATAATCATAACAATGAAGAAACAACCAAGTTTAGTTTATGTTTTCTCAACCAAATTCCTTCCACTATTTTTACCAACAACGAGATAGAAACGGGCAATGGTGATGCATTACAAGTTGCACTTATTGATGTCAAGAATTCCAATGCCATCCTCTCCAACGGACTGTTGTCGATAGCACAAATTGAGGTCATCGTCCTCGACGGAGACTCGGACGAGTTCATGAGCCGAAACATTTTGTCTCAAAGGAATGGAAAAAGGCCATTAATCGTGGGTAATGATTTGAAACTTCATCTCAAAAATGGAATTGGGGTCATCAAGAGTTTGAGCTTCACTGACAATTCAAGCTGGGTGAGATCCAAACAATTTAGATTAGGATTAAGAATTGTGGATGACAAAACTCATGGCAAGTTTCCAAGAATTAGAGAAGCTGTATCTCAACCATTCAGAGTCTTAGAAAATCGAGGAGAAGGTAGTTAACTATTTTATGTTTTATAACTCAAATTAAACCTAGCTATTTTCTCTCAAATTAAACCTTTTCTTTTTCTTTCTTTCTAATATATACATGGTTTGTTTTTGCTTCAATTGTTTAACCAGGGAGCAAGAAGCACCACCCTCCACAAAGGGAAGACGAGATATGGAGATTAGAAAGAATTAGAAGAAATGGTGTTTATCATAAAATCTTATCTTCTCAAGGCATCAAAACGGTTGATGATTTTTTAAGAACTTATGAAGAAAAGGGTCCTCTTTACTTAAGAAAGGTAAACTTAAAAAAGTATCATCGAAGTTCTTCGTCACTTACCCATTTTTATTTAGATAATGATCTAAAAGTTGTTAAACCAATTTCCCTTTTCATGCATTGATGAAGTTACTTGGTAAGAATGTGTCAAACAAGTCATGGAATGCAATGGTCACTAATGCTATGGAATGTGTCCCTCTTGTCAAAAGCTTTGCTCCAAGCTTCAAGGTTTGATGACTTTCTTCATCAACTTAAGACGACATTTATTTTAAAATTCTCACTTTGTATTTTTTTTTATTTTATTATTATTACATGAAGAGGCAAGATTTGCTTGAATATGAAGGCATGGGAAGTGAAGGTTTTGAAGAAAACTTAGAAGTAAGTGAGCAAAGGAACTCAAGTGATTGGAATAAGATTTTAGAAACAACATTTGAAGAATGGGAGCCCATGCAAGAAGCTTCAACTTCATATAAATACAACCCATGA

mRNA sequence

ATGGAAGATACTATTTTTCGCCGGGTCAGTAAGGAATTTGATAGAAAGCTTCTGTCGTCTTACACTGATCAATTTCTTCTATCGTTATCTTCAAGCGCTATCCAACGAAATAATCATAACAATGAAGAAACAACCAAGTTTAGTTTATGTTTTCTCAACCAAATTCCTTCCACTATTTTTACCAACAACGAGATAGAAACGGGCAATGGTGATGCATTACAAGTTGCACTTATTGATGTCAAGAATTCCAATGCCATCCTCTCCAACGGACTGTTGTCGATAGCACAAATTGAGTTACTTGGTAAGAATGTGTCAAACAAGTCATGGAATGCAATGGTCACTAATGCTATGGAATGTGTCCCTCTTGTCAAAAGCTTTGCTCCAAGCTTCAAGAGGCAAGATTTGCTTGAATATGAAGGCATGGGAAGTGAAGGTTTTGAAGAAAACTTAGAAGTAAGTGAGCAAAGGAACTCAAGTGATTGGAATAAGATTTTAGAAACAACATTTGAAGAATGGGAGCCCATGCAAGAAGCTTCAACTTCATATAAATACAACCCATGA

Coding sequence (CDS)

ATGGAAGATACTATTTTTCGCCGGGTCAGTAAGGAATTTGATAGAAAGCTTCTGTCGTCTTACACTGATCAATTTCTTCTATCGTTATCTTCAAGCGCTATCCAACGAAATAATCATAACAATGAAGAAACAACCAAGTTTAGTTTATGTTTTCTCAACCAAATTCCTTCCACTATTTTTACCAACAACGAGATAGAAACGGGCAATGGTGATGCATTACAAGTTGCACTTATTGATGTCAAGAATTCCAATGCCATCCTCTCCAACGGACTGTTGTCGATAGCACAAATTGAGTTACTTGGTAAGAATGTGTCAAACAAGTCATGGAATGCAATGGTCACTAATGCTATGGAATGTGTCCCTCTTGTCAAAAGCTTTGCTCCAAGCTTCAAGAGGCAAGATTTGCTTGAATATGAAGGCATGGGAAGTGAAGGTTTTGAAGAAAACTTAGAAGTAAGTGAGCAAAGGAACTCAAGTGATTGGAATAAGATTTTAGAAACAACATTTGAAGAATGGGAGCCCATGCAAGAAGCTTCAACTTCATATAAATACAACCCATGA

Homology

[Close]

BLAST of CSPI01G26100 vs. Swiss-Prot
Match: CB60G_ARATH (Calmodulin-binding protein 60 G OS=Arabidopsis thaliana GN=CBP60G PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-06
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60
           ME+ I R V +E  R L       FL S   S  +  +      ++  LCF+N  PS+IF
Sbjct: 45  MENMIRRIVREEIQRSL-----QPFLSSSCVSMERSRSETPSSRSRLKLCFINSPPSSIF 104

Query: 61  TNNEIETGNGDALQVALIDVKNSNAILSNGLLSIAQIEL--LGKNVSNKSW 110
           T ++IE  +G  L + L+D   +N ++S G  S +++EL  L  + + +SW
Sbjct: 105 TGSKIEAEDGSPLVIELVDA-TTNTLVSTGPFSSSRVELVPLNADFTEESW 149

[Close]

BLAST of CSPI01G26100 vs. TrEMBL
Match: A0A0A0LYY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569100 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-97
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 1


Query: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60
           MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF
Sbjct: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60

Query: 61  TNNEIETGNGDALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV 120
           TNNEIETGN DALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV
Sbjct: 61  TNNEIETGNADALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV 120

Query: 121 PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST 180
           PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST
Sbjct: 121 PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST 180

Query: 181 SYKYNP 187
           SYKYNP
Sbjct: 181 SYKYNP 186

[Close]

BLAST of CSPI01G26100 vs. TAIR10
Match: AT5G26920.1 (AT5G26920.1 Cam-binding protein 60-like G)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60
           ME+ I R V +E  R L       FL S   S  +  +      ++  LCF+N  PS+IF
Sbjct: 45  MENMIRRIVREEIQRSL-----QPFLSSSCVSMERSRSETPSSRSRLKLCFINSPPSSIF 104

Query: 61  TNNEIETGNGDALQVALIDVKNSNAILSNGLLSIAQIEL--LGKNVSNKSW 110
           T ++IE  +G  L + L+D   +N ++S G  S +++EL  L  + + +SW
Sbjct: 105 TGSKIEAEDGSPLVIELVDA-TTNTLVSTGPFSSSRVELVPLNADFTEESW 149

[Close]

BLAST of CSPI01G26100 vs. NCBI nr
Match: gi|700210936|gb|KGN66032.1| (hypothetical protein Csa_1G569100 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 1


Query: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60
           MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF
Sbjct: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60

Query: 61  TNNEIETGNGDALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV 120
           TNNEIETGN DALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV
Sbjct: 61  TNNEIETGNADALQVALIDVKNSNAILSNGLLSIAQIELLGKNVSNKSWNAMVTNAMECV 120

Query: 121 PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST 180
           PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST
Sbjct: 121 PLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRNSSDWNKILETTFEEWEPMQEAST 180

Query: 181 SYKYNP 187
           SYKYNP
Sbjct: 181 SYKYNP 186

[Close]

BLAST of CSPI01G26100 vs. NCBI nr
Match: gi|778665277|ref|XP_011648528.1| (PREDICTED: uncharacterized protein LOC105434515 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.4e-44
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 60
           MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF
Sbjct: 52  MEDTIFRRVSKEFDRKLLSSYTDQFLLSLSSSAIQRNNHNNEETTKFSLCFLNQIPSTIF 111

Query: 61  TNNEIETGNGDALQVALIDVKNSNAILSNGLLSIAQIELL 101
           TNNEIETGN DALQVALIDVKNSNAILSNGLLSIAQIE++
Sbjct: 112 TNNEIETGNADALQVALIDVKNSNAILSNGLLSIAQIEVI 151

[Close]

BLAST of CSPI01G26100 vs. NCBI nr
Match: gi|659100529|ref|XP_008451138.1| (PREDICTED: uncharacterized protein LOC103492515 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1


Query: 98  ELLGKNVSNKSWNAMVTNAMECVPLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRN 157
           +LLGKNVSNKSWNAMVTNA+EC+PLVK+FAPSF+RQDL EYEGMGSEGFE NLEV EQRN
Sbjct: 302 KLLGKNVSNKSWNAMVTNALECIPLVKNFAPSFERQDLFEYEGMGSEGFEGNLEVIEQRN 361

Query: 158 SSDWNKILETTFEEWEP-MQEASTSYKYN 186
           SSDWNK LETT EEW+P MQEASTS+KYN
Sbjct: 362 SSDWNKFLETTLEEWDPNMQEASTSHKYN 390

[Close]

BLAST of CSPI01G26100 vs. NCBI nr
Match: gi|659100533|ref|XP_008451139.1| (PREDICTED: uncharacterized protein LOC103492516 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 98  ELLGKNVSNKSWNAMVTNAMECVPLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRN 157
           +LLGKNV  K+WNAMVTNA ECV LVK+FAPSF+RQDL  YEGMGSEGFE N+EVSEQRN
Sbjct: 306 KLLGKNVPYKAWNAMVTNAFECVSLVKNFAPSFERQDLFGYEGMGSEGFEGNIEVSEQRN 365

Query: 158 SSDWNKILETTFEEWEPMQEASTSYKYN 186
           SSDWNK LETT EEW+PMQEASTS+KYN
Sbjct: 366 SSDWNKFLETTPEEWDPMQEASTSHKYN 393

[Close]

BLAST of CSPI01G26100 vs. NCBI nr
Match: gi|778665280|ref|XP_011648529.1| (PREDICTED: uncharacterized protein LOC105434516 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 98  ELLGKNVSNKSWNAMVTNAMECVPLVKSFAPSFKRQDLLEYEGMGSEGFEENLEVSEQRN 157
           +LLGK VSNKSWNAMVTNA+ECVPL K+FAPSF+RQD+ EYE MGSEG E +LE SEQRN
Sbjct: 181 KLLGKKVSNKSWNAMVTNALECVPLDKNFAPSFERQDMFEYECMGSEGLEGDLEGSEQRN 240

Query: 158 SSDWNKILETTFEEWEPMQEASTSYKYN 186
           S+DWNK LETT EEWE MQEASTSYKYN
Sbjct: 241 SNDWNKFLETTVEEWESMQEASTSYKYN 268

The following BLAST results are available for this feature:

BLAST of CSPI01G26100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB60G_ARATH	6.3e-06	32.43	Calmodulin-binding protein 60 G OS=Arabidopsis thaliana GN=CBP60G PE=1 SV=1	[more]

BLAST of CSPI01G26100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYY5_CUCSA	1.9e-97	99.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569100 PE=4 SV=1	[more]

BLAST of CSPI01G26100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26920.1	3.6e-07	32.43	Cam-binding protein 60-like G	[more]

BLAST of CSPI01G26100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210936\|gb\|KGN66032.1\|	2.7e-97	99.46	hypothetical protein Csa_1G569100 [Cucumis sativus]	[more]
gi\|778665277\|ref\|XP_011648528.1\|	3.4e-44	97.00	PREDICTED: uncharacterized protein LOC105434515 [Cucumis sativus]	[more]
gi\|659100529\|ref\|XP_008451138.1\|	2.2e-35	85.39	PREDICTED: uncharacterized protein LOC103492515 [Cucumis melo]	[more]
gi\|659100533\|ref\|XP_008451139.1\|	4.6e-33	81.82	PREDICTED: uncharacterized protein LOC103492516 [Cucumis melo]	[more]
gi\|778665280\|ref\|XP_011648529.1\|	3.0e-32	80.68	PREDICTED: uncharacterized protein LOC105434516 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012416	CBP60

Vocabulary: **Molecular Function**
Term	Definition
GO:0005516	calmodulin binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005516	calmodulin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G26100.1	CSPI01G26100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012416	CALMODULIN-BINDING PROTEIN60	PFAM	PF07887	Calmodulin_bind	coord: 48..100 score: 2.
None	No IPR available	PANTHER	PTHR31713	FAMILY NOT NAMED	coord: 5..100 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G26100	Csa1G569100	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G26100	Lsi06G000790	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G26100	MELO3C029291.2	Melon (DHL92) v3.6.1	cpimedB036
CSPI01G26100	CsaV3_1G038520	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G26100	Bhi02G001791	Wax gourd	cpiwgoB104
CSPI01G26100	Cucsa.051330	Cucumber (Gy14) v1	cgycpiB034
CSPI01G26100	CsGy1G025370	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G26100	Cucumber (Chinese Long) v3	cpicucB033
CSPI01G26100	Watermelon (97103) v2	cpiwmbB045
CSPI01G26100	Wax gourd	cpiwgoB016
CSPI01G26100	Wild cucumber (PI 183967)	cpicpiB021
CSPI01G26100	Cucurbita maxima (Rimu)	cmacpiB061
CSPI01G26100	Cucurbita moschata (Rifu)	cmocpiB055
CSPI01G26100	Cucumber (Chinese Long) v2	cpicuB029
CSPI01G26100	Melon (DHL92) v3.5.1	cpimeB042
CSPI01G26100	Melon (DHL92) v3.5.1	cpimeB080
CSPI01G26100	Watermelon (Charleston Gray)	cpiwcgB049
CSPI01G26100	Watermelon (Charleston Gray)	cpiwcgB069
CSPI01G26100	Watermelon (97103) v1	cpiwmB025
CSPI01G26100	Watermelon (97103) v1	cpiwmB041
CSPI01G26100	Cucurbita pepo (Zucchini)	cpecpiB088
CSPI01G26100	Cucurbita pepo (Zucchini)	cpecpiB354
CSPI01G26100	Cucurbita pepo (Zucchini)	cpecpiB808