CSPI01G25970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G25970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21352383 .. 21354554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACAAAACACAAACTCTCCTCCTCCCTTTGATCATCTTCAAGGTCCACCCAACATAATCTGCGGCCTCTCTTTTCCTTATGGGTACAGTCTGATCTCTCATTAGTTTCATTCTTTTGGACTATAATGTATGGATCTAAGCCTAATTTATTGTTTTCTCTCCTTCTATTTTCACAGCTCTGGAGTTGGACCTGAGGTTTCAATTCCTCGATCCTGGGCTCATCTTGAAAATTTTCTTCGTGGGGTGGTATGCATGTTATGCCTAATATTATTTCAAACTTTTTGTTAATTATTAAGCTCATGTGTGTATGGTAAATTTAATTTCAGATACGGGAGGAGGTGGAGGCAAAGGTTGAAGCTCACTTTTTTAGGGTCAAAGAAGGAAAAGAAGGCAGTGGTGATGGTGGTGGATCTGGGGGAACAAATGAGAATTTGAGGCTACGTTTCAGGAGCAAGATTCCATCCATCGTCTACACTGCAAATAACATCGAAGCCAAGAATGGGGAGGAGCTGGGTGTTGAATTATTTGATGTTGTTAATGATCGCATCATTGACGTTACTCATCCATTGTCGTCGGCGTCGATTGAGGTTGTTGTCCTTGACGGAGAATTCAACGACGGGGAAGCAATAACTCAATCGGATTTCAACAGAAGTATTGTGCCACAAAGGCTGGGAGAACGACTTTTGTTGATTGGTGATGATAAGAGTTTTCGTTTAGAAAATGGTGTTTATTCCATCACCAATTTGTCATTCACTACAAACTCAAGCAGGAGCAGAACCAAGAAGATTTGTTTGGGATTGAGGGTTAAACATGACTCCAACAACAACTATCCTACAGTCGGATACGCCGTGTCCAATCCTTTTAGAGTGAAGGATCACCGAGGCCAACGTACGTATCTTGAGTCGTCGTTCTGCTAGAGCTGAGCTGCATCCATCTTTTCATTTTTATTTACAATATCCTAATTATTTTTTTATATGTACATCTAACAGCGAACAAGAAACACCATCCTCCGGGAGGAGAAGATGAAGTATGGAGATTGGAAGGGATCGCGCGAAATGGCGAATATCACAAGCGTCTAACTTCCCATGGTATAATAAATGTGGATGCTTTTGTGAAGGCTCATCAAAATGACTCTCGTTCTCTAAGAAAGGTATAATACACACACATATATATACATATACATATATATAGAATAATTGTGATATTAATTTGGGGTAATTTTGATGCACAGTGGTTAGGGAATAGACTTTCAGACAGACAATGGAAGACAATGGTAAAGCAAGCTCTTCAATATGTTCCTATCACCATCCCCACTTTTGATCCACCAAACTTACAGGTATTTTCTGTTATGCAATAAACTCATCGTTCTTCCTTCAAATTCATGATAATTATTTTGATAATATTATATGTAAAAAATAAAGCAGGAAAATTTGGAGCTGCAAAATGAAGCCATGGATCAAAATGCATCTGTTTTCAACCAAAACAATATTGGTGCAAGTAATGGAAATTATGAGTTCCAAAATCAAACATTGTTGGGCAATTTTCACGACTTTTCCTTTAATCATCTCACATCTGAAGGTATATTTTTCCCTCCTTTTATTTTAATTGATCATCATAAAAAATAAAAAAAAAATCAATATCTCTTGAAATTATTATAATTTACTTGATGTCTATATCATTATTAAAAATGAAAACCATATAATAATATTGTGTTTCTTTTTATTAATTCTGTAGATCATTATAATTACACAATACAAACATTGTTGGCACCTGGAGAAGCTTCAACCTCAAATGCCCAAAACATAAACAATTATGATGAAAATACAAGTACATGTAACCCATACTTCCAAGGAACTTGGAACAAGTTGGTCCCCAAACCCAAATGATTCAAAATAATAATACTGCTCTTAAAATCAAACTAAGATATATATGAACCAATAACATCATATCTTGACTTTGGAATGTGATGAATTGTGCTACATTTGTGTCAACATAGTTGAGATATTTAAGTGTACGGACGGGTCCCTTCTTCCAATGTAAACAAGTTTGTAAGATATAGATCAAGTCTATAACGTTTGTTTTTAGTTTGGGATATGACGAAGGTGTTATAGATGTGTCGACTTAGTTACGTTGGGATATTTTAGTAGTCCTACCGATCCCTTTTATGTT

mRNA sequence

ATGGTACAAAACACAAACTCTCCTCCTCCCTTTGATCATCTTCAAGGTCCACCCAACATAATCTGCGGCCTCTCTTTTCCTTATGGCTCTGGAGTTGGACCTGAGGTTTCAATTCCTCGATCCTGGGCTCATCTTGAAAATTTTCTTCGTGGGGTGATACGGGAGGAGGTGGAGGCAAAGGTTGAAGCTCACTTTTTTAGGGTCAAAGAAGGAAAAGAAGGCAGTGGTGATGGTGGTGGATCTGGGGGAACAAATGAGAATTTGAGGCTACGTTTCAGGAGCAAGATTCCATCCATCGTCTACACTGCAAATAACATCGAAGCCAAGAATGGGGAGGAGCTGGGTGTTGAATTATTTGATGTTGTTAATGATCGCATCATTGACTGGTTAGGGAATAGACTTTCAGACAGACAATGGAAGACAATGGTAAAGCAAGCTCTTCAATATGTTCCTATCACCATCCCCACTTTTGATCCACCAAACTTACAGGAAAATTTGGAGCTGCAAAATGAAGCCATGGATCAAAATGCATCTGTTTTCAACCAAAACAATATTGGTGCAAGTAATGGAAATTATGAGTTCCAAAATCAAACATTGTTGGGCAATTTTCACGACTTTTCCTTTAATCATCTCACATCTGAAGATCATTATAATTACACAATACAAACATTGTTGGCACCTGGAGAAGCTTCAACCTCAAATGCCCAAAACATAAACAATTATGATGAAAATACAAGTACATGTAACCCATACTTCCAAGGAACTTGGAACAAGTTGGTCCCCAAACCCAAATGA

Coding sequence (CDS)

ATGGTACAAAACACAAACTCTCCTCCTCCCTTTGATCATCTTCAAGGTCCACCCAACATAATCTGCGGCCTCTCTTTTCCTTATGGCTCTGGAGTTGGACCTGAGGTTTCAATTCCTCGATCCTGGGCTCATCTTGAAAATTTTCTTCGTGGGGTGATACGGGAGGAGGTGGAGGCAAAGGTTGAAGCTCACTTTTTTAGGGTCAAAGAAGGAAAAGAAGGCAGTGGTGATGGTGGTGGATCTGGGGGAACAAATGAGAATTTGAGGCTACGTTTCAGGAGCAAGATTCCATCCATCGTCTACACTGCAAATAACATCGAAGCCAAGAATGGGGAGGAGCTGGGTGTTGAATTATTTGATGTTGTTAATGATCGCATCATTGACTGGTTAGGGAATAGACTTTCAGACAGACAATGGAAGACAATGGTAAAGCAAGCTCTTCAATATGTTCCTATCACCATCCCCACTTTTGATCCACCAAACTTACAGGAAAATTTGGAGCTGCAAAATGAAGCCATGGATCAAAATGCATCTGTTTTCAACCAAAACAATATTGGTGCAAGTAATGGAAATTATGAGTTCCAAAATCAAACATTGTTGGGCAATTTTCACGACTTTTCCTTTAATCATCTCACATCTGAAGATCATTATAATTACACAATACAAACATTGTTGGCACCTGGAGAAGCTTCAACCTCAAATGCCCAAAACATAAACAATTATGATGAAAATACAAGTACATGTAACCCATACTTCCAAGGAACTTGGAACAAGTTGGTCCCCAAACCCAAATGA
Homology
[Close]
BLAST of CSPI01G25970 vs. TrEMBL
Match: A0A0A0LYD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568480 PE=4 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 6.0e-150
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 1 

Query: 1   MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVGPEVSIPRSWAHLENFLRGVIREEVEAK 60
           MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVG EVSIPRSWAHLENFLRGVIREEVEAK
Sbjct: 1   MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVGAEVSIPRSWAHLENFLRGVIREEVEAK 60

Query: 61  VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD 120
           VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD
Sbjct: 61  VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD 120

Query: 121 VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF 180
           VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF
Sbjct: 121 VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF 180

Query: 181 NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINN 240
           NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLL+PGEASTSNAQNINN
Sbjct: 181 NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLSPGEASTSNAQNINN 240

Query: 241 YDENTSTCNPYFQGTWNKLVPKPK 265
           YDENTSTCNPYFQGTWNKLV KPK
Sbjct: 241 YDENTSTCNPYFQGTWNKLVLKPK 264

[Close]
BLAST of CSPI01G25970 vs. TrEMBL
Match: A0A0A0LVX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568490 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 112/195 (57.44%), Postives = 138/195 (70.77%), Query Frame = 1 

Query: 24  LSFPYGSGVGPEVSI-PRSWAHLENFLRGVIREEVEAKVEAHFFRVKEGKEGSGDGGGSG 83
           +S P+   VG   S+ P+S A +EN  R ++REEV+A+++AH   V+EGKE  G+GGGSG
Sbjct: 6   ISIPFWFAVGSAGSLSPKSTAIVENIFRSIVREEVDAQLKAHSVDVEEGKEVVGNGGGSG 65

Query: 84  GTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFDVVNDRIIDWLGNRLSDRQWKTM 143
           GTNENL L   ++I S +YTAN+IEA+NGEEL VELFD   D IID LGNRLS+R+WK M
Sbjct: 66  GTNENLWLCLMNRISSTIYTANDIEAENGEELRVELFD--GDHIIDCLGNRLSERKWKAM 125

Query: 144 VKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVFNQNNIGASNGNYEFQNQTLLGN 203
           VKQAL+YVP  IPT D PNLQE     N  MDQN  V NQ NI AS+GNYEFQ  T LG+
Sbjct: 126 VKQALRYVPSIIPTSDSPNLQE-----NAGMDQNEVVLNQ-NIDASSGNYEFQYGTFLGS 185

Query: 204 FHDFSFNHLTSEDHY 218
           F D   N+   ED++
Sbjct: 186 FQDLFHNNPIFEDYH 192

[Close]
BLAST of CSPI01G25970 vs. NCBI nr
Match: gi|700210923|gb|KGN66019.1| (hypothetical protein Csa_1G568480 [Cucumis sativus])

HSP 1 Score: 538.1 bits (1385), Expect = 8.6e-150
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 1 

Query: 1   MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVGPEVSIPRSWAHLENFLRGVIREEVEAK 60
           MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVG EVSIPRSWAHLENFLRGVIREEVEAK
Sbjct: 1   MVQNTNSPPPFDHLQGPPNIICGLSFPYGSGVGAEVSIPRSWAHLENFLRGVIREEVEAK 60

Query: 61  VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD 120
           VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD
Sbjct: 61  VEAHFFRVKEGKEGSGDGGGSGGTNENLRLRFRSKIPSIVYTANNIEAKNGEELGVELFD 120

Query: 121 VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF 180
           VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF
Sbjct: 121 VVNDRIIDWLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVF 180

Query: 181 NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINN 240
           NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLL+PGEASTSNAQNINN
Sbjct: 181 NQNNIGASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLSPGEASTSNAQNINN 240

Query: 241 YDENTSTCNPYFQGTWNKLVPKPK 265
           YDENTSTCNPYFQGTWNKLV KPK
Sbjct: 241 YDENTSTCNPYFQGTWNKLVLKPK 264

[Close]
BLAST of CSPI01G25970 vs. NCBI nr
Match: gi|778662270|ref|XP_011659631.1| (PREDICTED: uncharacterized protein LOC105436210 isoform X2 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 3.2e-72
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 

Query: 129 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVFNQNNIGAS 188
           WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVFNQNNIGAS
Sbjct: 294 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQNASVFNQNNIGAS 353

Query: 189 NGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINNYDENTSTC 248
           NGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLL+PGEASTSNAQNINNYDENTSTC
Sbjct: 354 NGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLSPGEASTSNAQNINNYDENTSTC 413

Query: 249 NPYFQGTWNKLVPKPK 265
           NPYFQGTWNKLV KPK
Sbjct: 414 NPYFQGTWNKLVLKPK 429

[Close]
BLAST of CSPI01G25970 vs. NCBI nr
Match: gi|778662267|ref|XP_011659625.1| (PREDICTED: uncharacterized protein LOC105436210 isoform X1 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 8.0e-71
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 129 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNL-QENLELQNEAMDQNASVFNQNNIGA 188
           WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNL QENLELQNEAMDQNASVFNQNNIGA
Sbjct: 294 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQQENLELQNEAMDQNASVFNQNNIGA 353

Query: 189 SNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINNYDENTST 248
           SNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLL+PGEASTSNAQNINNYDENTST
Sbjct: 354 SNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLSPGEASTSNAQNINNYDENTST 413

Query: 249 CNPYFQGTWNKLVPKPK 265
           CNPYFQGTWNKLV KPK
Sbjct: 414 CNPYFQGTWNKLVLKPK 430

[Close]
BLAST of CSPI01G25970 vs. NCBI nr
Match: gi|659099363|ref|XP_008450562.1| (PREDICTED: uncharacterized protein LOC103492122 isoform X2 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 114/137 (83.21%), Postives = 120/137 (87.59%), Query Frame = 1 

Query: 129 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQENLELQNEAMDQN-ASVFNQNNIGA 188
           WLGNRLS++ WKTMVKQALQYVPITIPTFD P LQENLELQNEAMDQN  +VFNQ NIGA
Sbjct: 338 WLGNRLSEKTWKTMVKQALQYVPITIPTFDRPYLQENLELQNEAMDQNEKAVFNQ-NIGA 397

Query: 189 SNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINNYDENTST 248
            NGNYEFQ QTLLGNFH F   + T EDHYN+TI TLL+PGEASTS AQNINNYDENTST
Sbjct: 398 INGNYEFQEQTLLGNFHFFC--NPTFEDHYNHTIPTLLSPGEASTSYAQNINNYDENTST 457

Query: 249 CNPYFQGTWNKLVPKPK 265
           CN YFQGTWNKLVPKPK
Sbjct: 458 CNQYFQGTWNKLVPKPK 471

[Close]
BLAST of CSPI01G25970 vs. NCBI nr
Match: gi|659099365|ref|XP_008450563.1| (PREDICTED: uncharacterized protein LOC103492122 isoform X3 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 114/138 (82.61%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 129 WLGNRLSDRQWKTMVKQALQYVPITIPTFDPPNLQ-ENLELQNEAMDQNA-SVFNQNNIG 188
           WLGNRLS++ WKTMVKQALQYVPITIPTFD P LQ ENLELQNEAMDQN  +VFNQN IG
Sbjct: 337 WLGNRLSEKTWKTMVKQALQYVPITIPTFDRPYLQQENLELQNEAMDQNEKAVFNQN-IG 396

Query: 189 ASNGNYEFQNQTLLGNFHDFSFNHLTSEDHYNYTIQTLLAPGEASTSNAQNINNYDENTS 248
           A NGNYEFQ QTLLGNFH F   + T EDHYN+TI TLL+PGEASTS AQNINNYDENTS
Sbjct: 397 AINGNYEFQEQTLLGNFHFFC--NPTFEDHYNHTIPTLLSPGEASTSYAQNINNYDENTS 456

Query: 249 TCNPYFQGTWNKLVPKPK 265
           TCN YFQGTWNKLVPKPK
Sbjct: 457 TCNQYFQGTWNKLVPKPK 471

The following BLAST results are available for this feature:
BLAST of CSPI01G25970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G25970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYD9_CUCSA6.0e-15098.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568480 PE=4 SV=1[more]
A0A0A0LVX8_CUCSA1.9e-4757.44Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568490 PE=4 SV=1[more]
BLAST of CSPI01G25970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G25970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210923|gb|KGN66019.1|8.6e-15098.86hypothetical protein Csa_1G568480 [Cucumis sativus][more]
gi|778662270|ref|XP_011659631.1|3.2e-7298.53PREDICTED: uncharacterized protein LOC105436210 isoform X2 [Cucumis sativus][more]
gi|778662267|ref|XP_011659625.1|8.0e-7197.81PREDICTED: uncharacterized protein LOC105436210 isoform X1 [Cucumis sativus][more]
gi|659099363|ref|XP_008450562.1|1.8e-5483.21PREDICTED: uncharacterized protein LOC103492122 isoform X2 [Cucumis melo][more]
gi|659099365|ref|XP_008450563.1|4.4e-5382.61PREDICTED: uncharacterized protein LOC103492122 isoform X3 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25970.1CSPI01G25970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G25970CsaV3_1G038380Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G25970Cucumber (Chinese Long) v2cpicuB001
CSPI01G25970Melon (DHL92) v3.5.1cpimeB042
CSPI01G25970Watermelon (Charleston Gray)cpiwcgB049
CSPI01G25970Watermelon (97103) v1cpiwmB025
CSPI01G25970Cucurbita pepo (Zucchini)cpecpiB088
CSPI01G25970Cucurbita pepo (Zucchini)cpecpiB354
CSPI01G25970Cucurbita pepo (Zucchini)cpecpiB654
CSPI01G25970Cucurbita pepo (Zucchini)cpecpiB808
CSPI01G25970Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G25970Melon (DHL92) v3.6.1cpimedB036
CSPI01G25970Cucumber (Gy14) v2cgybcpiB002
CSPI01G25970Watermelon (97103) v2cpiwmbB045
CSPI01G25970Wax gourdcpiwgoB104
CSPI01G25970Cucumber (Gy14) v1cgycpiB034
CSPI01G25970Cucurbita maxima (Rimu)cmacpiB061
CSPI01G25970Cucurbita moschata (Rifu)cmocpiB055
CSPI01G25970Cucurbita moschata (Rifu)cmocpiB086