CSPI01G25030 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G25030
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCleavage and polyadenylation specificity factor CPSF30
LocationChr1 : 20470320 .. 20470733 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTACCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGACGTTTTGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGGGTTTGGGATGATGATGGGACAAGGACGTTGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

mRNA sequence

ATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTACCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGACGTTTTGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGGGTTTGGGATGATGATGGGACAAGGACGTTGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

Coding sequence (CDS)

ATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTACCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGACGTTTTGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGGGTTTGGGATGATGATGGGACAAGGACGTTGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA
Homology
[Close]
BLAST of CSPI01G25030 vs. Swiss-Prot
Match: CPSF_ARATH (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25
Identity = 72/135 (53.33%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGP 60
           MWPP MP+GRG RP  GM   P G+MGP D   YGP   +G  MPD FGM P  FGPYGP
Sbjct: 447 MWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGP 506

Query: 61  RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPV 120
           RF GDF GP   M F GRP Q    F  GG+G MMG GR P MGGMG           P 
Sbjct: 507 RFGGDFRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG---------NAPR 566

Query: 121 GVSPLYPPPTGPSAQ 135
           G  P+Y PP   SA+
Sbjct: 567 GGRPMYYPPATSSAR 566

[Close]
BLAST of CSPI01G25030 vs. TrEMBL
Match: A0A0A0LY24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538270 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.4e-71
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPR
Sbjct: 424 MWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPYGPR 483

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR PFMGGMGVTGTSPARPGRPVG
Sbjct: 484 FSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 543

Query: 121 VSPLYPPPTGPSAQNIN 138
           VSPLYPPPTGPSAQNIN
Sbjct: 544 VSPLYPPPTGPSAQNIN 560

[Close]
BLAST of CSPI01G25030 vs. TrEMBL
Match: A0A0A0KSR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.1e-62
Identity = 117/139 (84.17%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGP- 60
           MWPPHMPMGRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGM P GFGPYGP 
Sbjct: 476 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPT 535

Query: 61  -RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRP 120
            RFSGDFMGP +AM F GRPSQP AMF P GFGMMMGQGR PFMGGMGV G +PARPGRP
Sbjct: 536 PRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRP 595

Query: 121 VGVSPLYPPPTGPSAQNIN 138
           VGVSPLYPPP  PS+QN+N
Sbjct: 596 VGVSPLYPPPAVPSSQNMN 614

[Close]
BLAST of CSPI01G25030 vs. TrEMBL
Match: A0A061DY09_THECC (Cleavage and polyadenylation specificity factor 30 OS=Theobroma cacao GN=TCM_006095 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.5e-46
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MWPPHMP+ RGARP  GM+  PP MMG DG SYGPVT DGF +PD+FG AP  F PYGPR
Sbjct: 467 MWPPHMPLARGARPMPGMRGFPPMMMGGDGFSYGPVTPDGFGVPDLFG-APRPFPPYGPR 526

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDF GP+S M F GRP QPGAMF  GG GMMMG GR PFMGGMG TG +P R GRPV 
Sbjct: 527 FSGDFTGPASGMMFPGRPPQPGAMFPAGGLGMMMGPGRAPFMGGMGPTGANPVRGGRPVS 586

Query: 121 VSPLYPPPTGPSAQN 136
           + P++PPP  PS+QN
Sbjct: 587 MPPMFPPPPAPSSQN 600

[Close]
BLAST of CSPI01G25030 vs. TrEMBL
Match: A0A0D2R9E9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046800 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.2e-46
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MWPPHMP+ RGARP  GM+  PP MMG DG SYGPVT DGF MPD+FG AP  F PYGPR
Sbjct: 470 MWPPHMPLARGARPMPGMRGFPPMMMGGDGFSYGPVTPDGFGMPDLFG-APRPFAPYGPR 529

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDF GP+S M F GRP QPG MF  GG GMMMG GR PFMGGMG TG +PAR GRPVG
Sbjct: 530 FSGDFTGPASGMMFPGRPPQPGGMFPSGGIGMMMGPGRAPFMGGMGPTGANPARGGRPVG 589

Query: 121 VSPLYPPPTGPSAQN 136
           + P++P P  P++QN
Sbjct: 590 MPPMFPLPPAPASQN 603

[Close]
BLAST of CSPI01G25030 vs. TrEMBL
Match: A0A0D2PNT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046800 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.2e-46
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MWPPHMP+ RGARP  GM+  PP MMG DG SYGPVT DGF MPD+FG AP  F PYGPR
Sbjct: 469 MWPPHMPLARGARPMPGMRGFPPMMMGGDGFSYGPVTPDGFGMPDLFG-APRPFAPYGPR 528

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDF GP+S M F GRP QPG MF  GG GMMMG GR PFMGGMG TG +PAR GRPVG
Sbjct: 529 FSGDFTGPASGMMFPGRPPQPGGMFPSGGIGMMMGPGRAPFMGGMGPTGANPARGGRPVG 588

Query: 121 VSPLYPPPTGPSAQN 136
           + P++P P  P++QN
Sbjct: 589 MPPMFPLPPAPASQN 602

[Close]
BLAST of CSPI01G25030 vs. TAIR10
Match: AT1G30460.1 (AT1G30460.1 cleavage and polyadenylation specificity factor 30)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 72/135 (53.33%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGP 60
           MWPP MP+GRG RP  GM   P G+MGP D   YGP   +G  MPD FGM P  FGPYGP
Sbjct: 447 MWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGP 506

Query: 61  RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPV 120
           RF GDF GP   M F GRP Q    F  GG+G MMG GR P MGGMG           P 
Sbjct: 507 RFGGDFRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG---------NAPR 566

Query: 121 GVSPLYPPPTGPSAQ 135
           G  P+Y PP   SA+
Sbjct: 567 GGRPMYYPPATSSAR 566

[Close]
BLAST of CSPI01G25030 vs. NCBI nr
Match: gi|778665246|ref|XP_011648522.1| (PREDICTED: LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPR
Sbjct: 481 MWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPYGPR 540

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR PFMGGMGVTGTSPARPGRPVG
Sbjct: 541 FSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 600

Query: 121 VSPLYPPPTGPSAQNIN 138
           VSPLYPPPTGPSAQNIN
Sbjct: 601 VSPLYPPPTGPSAQNIN 617

[Close]
BLAST of CSPI01G25030 vs. NCBI nr
Match: gi|700210833|gb|KGN65929.1| (hypothetical protein Csa_1G538270 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPR
Sbjct: 424 MWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPYGPR 483

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR PFMGGMGVTGTSPARPGRPVG
Sbjct: 484 FSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 543

Query: 121 VSPLYPPPTGPSAQNIN 138
           VSPLYPPPTGPSAQNIN
Sbjct: 544 VSPLYPPPTGPSAQNIN 560

[Close]
BLAST of CSPI01G25030 vs. NCBI nr
Match: gi|659068585|ref|XP_008445183.1| (PREDICTED: cleavage and polyadenylation specificity factor CPSF30 [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 8.6e-69
Identity = 128/137 (93.43%), Postives = 128/137 (93.43%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPR 60
           MWPPHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPR
Sbjct: 478 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPR 537

Query: 61  FSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRPVG 120
           FSGDFMGP SAM F GRPSQPGAMFTPGGFGMMMGQGR PFMGGMGVTGTSPARPGRPVG
Sbjct: 538 FSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 597

Query: 121 VSPLYPPPTGPSAQNIN 138
           VSPLYPPP  PSAQNIN
Sbjct: 598 VSPLYPPPAVPSAQNIN 614

[Close]
BLAST of CSPI01G25030 vs. NCBI nr
Match: gi|449447537|ref|XP_004141524.1| (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 117/139 (84.17%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGP- 60
           MWPPHMPMGRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGM P GFGPYGP 
Sbjct: 476 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPT 535

Query: 61  -RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGTSPARPGRP 120
            RFSGDFMGP +AM F GRPSQP AMF P GFGMMMGQGR PFMGGMGV G +PARPGRP
Sbjct: 536 PRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRP 595

Query: 121 VGVSPLYPPPTGPSAQNIN 138
           VGVSPLYPPP  PS+QN+N
Sbjct: 596 VGVSPLYPPPAVPSSQNMN 614

[Close]
BLAST of CSPI01G25030 vs. NCBI nr
Match: gi|659119181|ref|XP_008459517.1| (PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 118/140 (84.29%), Postives = 123/140 (87.86%), Query Frame = 1 

Query: 1   MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYG-- 60
           MWPP MP+GRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYG  
Sbjct: 476 MWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPT 535

Query: 61  PRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGR-CPFMGGMGVTGTSPARPGR 120
           PRFS DFMGP +AM F GRPSQPGAMF PGGFGMMMGQGR  PFMGGMGVTG +PARPGR
Sbjct: 536 PRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGANPARPGR 595

Query: 121 PVGVSPLYPPPTGPSAQNIN 138
           PVGVSPLYPPP  PS+QN+N
Sbjct: 596 PVGVSPLYPPPAVPSSQNMN 615

The following BLAST results are available for this feature:
BLAST of CSPI01G25030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPSF_ARATH2.0e-2553.3330-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian... [more]
BLAST of CSPI01G25030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY24_CUCSA8.4e-7194.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538270 PE=4 SV=1[more]
A0A0A0KSR6_CUCSA7.1e-6284.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647360 PE=4 SV=1[more]
A0A061DY09_THECC5.5e-4668.89Cleavage and polyadenylation specificity factor 30 OS=Theobroma cacao GN=TCM_006... [more]
A0A0D2R9E9_GOSRA7.2e-4668.89Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046800 PE=4 SV=1[more]
A0A0D2PNT4_GOSRA7.2e-4668.89Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046800 PE=4 SV=1[more]
BLAST of CSPI01G25030 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30460.11.1e-2653.33 cleavage and polyadenylation specificity factor 30[more]
BLAST of CSPI01G25030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665246|ref|XP_011648522.1|1.2e-7094.89PREDICTED: LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity ... [more]
gi|700210833|gb|KGN65929.1|1.2e-7094.89hypothetical protein Csa_1G538270 [Cucumis sativus][more]
gi|659068585|ref|XP_008445183.1|8.6e-6993.43PREDICTED: cleavage and polyadenylation specificity factor CPSF30 [Cucumis melo][more]
gi|449447537|ref|XP_004141524.1|1.0e-6184.17PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum... [more]
gi|659119181|ref|XP_008459517.1|1.1e-6084.29PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Cucumis ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051716 cellular response to stimulus
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0044763 single-organism cellular process
biological_process GO:0050896 response to stimulus
biological_process GO:0050794 regulation of cellular process
biological_process GO:0031124 mRNA 3'-end processing
biological_process GO:0008150 biological_process
biological_process GO:0006950 response to stress
biological_process GO:0048583 regulation of response to stimulus
biological_process GO:0043068 positive regulation of programmed cell death
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005634 nucleus
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25030.1CSPI01G25030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGcoord: 1..78
score: 5.0
NoneNo IPR availablePANTHERPTHR12357:SF3FI21232P1coord: 1..78
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G25030Cla019525Watermelon (97103) v1cpiwmB017
CSPI01G25030Csa1G538270Cucumber (Chinese Long) v2cpicuB001
CSPI01G25030MELO3C002805Melon (DHL92) v3.5.1cpimeB014
CSPI01G25030ClCG03G006290Watermelon (Charleston Gray)cpiwcgB044
CSPI01G25030Lsi02G009400Bottle gourd (USVL1VR-Ls)cpilsiB036
CSPI01G25030MELO3C002805.2Melon (DHL92) v3.6.1cpimedB015
CSPI01G25030CsaV3_1G037380Cucumber (Chinese Long) v3cpicucB000
CSPI01G25030Cla97C03G057580Watermelon (97103) v2cpiwmbB038
CSPI01G25030Bhi08G000865Wax gourdcpiwgoB040
CSPI01G25030Cucsa.167130Cucumber (Gy14) v1cgycpiB262
CSPI01G25030CmaCh18G005070Cucurbita maxima (Rimu)cmacpiB406
CSPI01G25030CmaCh13G004960Cucurbita maxima (Rimu)cmacpiB210
CSPI01G25030CmoCh13G005240Cucurbita moschata (Rifu)cmocpiB198
CSPI01G25030CmoCh18G004810Cucurbita moschata (Rifu)cmocpiB392
CSPI01G25030Cp4.1LG20g05600Cucurbita pepo (Zucchini)cpecpiB521
CSPI01G25030Cp4.1LG09g07310Cucurbita pepo (Zucchini)cpecpiB021
CSPI01G25030Carg22572Silver-seed gourdcarcpiB0460
CSPI01G25030Carg21393Silver-seed gourdcarcpiB0432
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G25030Cucurbita moschata (Rifu)cmocpiB207
CSPI01G25030Cucurbita moschata (Rifu)cmocpiB384
CSPI01G25030Watermelon (Charleston Gray)cpiwcgB045
CSPI01G25030Watermelon (97103) v1cpiwmB016
CSPI01G25030Cucurbita pepo (Zucchini)cpecpiB026
CSPI01G25030Cucurbita pepo (Zucchini)cpecpiB508
CSPI01G25030Bottle gourd (USVL1VR-Ls)cpilsiB022
CSPI01G25030Melon (DHL92) v3.6.1cpimedB027
CSPI01G25030Cucumber (Gy14) v2cgybcpiB002
CSPI01G25030Silver-seed gourdcarcpiB0430
CSPI01G25030Silver-seed gourdcarcpiB0458
CSPI01G25030Watermelon (97103) v2cpiwmbB039
CSPI01G25030Cucurbita maxima (Rimu)cmacpiB221
CSPI01G25030Cucurbita maxima (Rimu)cmacpiB396