CSPI01G24750 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G24750
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Gag-pol polyprotein
Location	Chr1 : 20168147 .. 20168479 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAAAGCTTCAAGCTTTGAGGCAAGGTAATAAGTCGGTGGGAAACTACTACGAAGAGATAGACACTTTGATGGATCGACTTGATCTTGATGAGAAAATGAAGACTCTCATGACACAGTTTTTTAATCGCCTCAACAAGGAGATTGCTGACAAGGTTGATTTACAGTTGTATTGTGACATAAAGGAGATATTGCATCTTGCCATCAAAGTGGAAAAACAATTGAGTAGCAAAAGAACAAGGTACAATTCTTCTAAACCTTATTCTTCCTTCAACTCATCATGGAAAAAGGAGAATAAAAGAGAATATAGAAGTAGGATAAGTTTGTGA

mRNA sequence

ATGGCACAAAAGCTTCAAGCTTTGAGGCAAGGTAATAAGTCGGTGGGAAACTACTACGAAGAGATAGACACTTTGATGGATCGACTTGATCTTGATGAGAAAATGAAGACTCTCATGACACAGTTTTTTAATCGCCTCAACAAGGAGATTGCTGACAAGGTTGATTTACAGTTGTATTGTGACATAAAGGAGATATTGCATCTTGCCATCAAAGTGGAAAAACAATTGAGTAGCAAAAGAACAAGGTACAATTCTTCTAAACCTTATTCTTCCTTCAACTCATCATGGAAAAAGGAGAATAAAAGAGAATATAGAAGTAGGATAAGTTTGTGA

Coding sequence (CDS)

ATGGCACAAAAGCTTCAAGCTTTGAGGCAAGGTAATAAGTCGGTGGGAAACTACTACGAAGAGATAGACACTTTGATGGATCGACTTGATCTTGATGAGAAAATGAAGACTCTCATGACACAGTTTTTTAATCGCCTCAACAAGGAGATTGCTGACAAGGTTGATTTACAGTTGTATTGTGACATAAAGGAGATATTGCATCTTGCCATCAAAGTGGAAAAACAATTGAGTAGCAAAAGAACAAGGTACAATTCTTCTAAACCTTATTCTTCCTTCAACTCATCATGGAAAAAGGAGAATAAAAGAGAATATAGAAGTAGGATAAGTTTGTGA

Homology

[Close]

BLAST of CSPI01G24750 vs. TrEMBL
Match: A0A151RW41_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 4   KLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIK 63
           KLQ L QG K V  Y++E+D LM + +++E  +  M +F N LN +I D V+LQ + +I+
Sbjct: 160 KLQKLSQGTKRVEEYFKELDLLMMQANIEEDPELTMARFINGLNNDICDVVELQEFVEIE 219

Query: 64  EILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKREYRSRIS 110
           ++LH +I+VE+QL  K     SS  Y+SF  SWK +NK+E    +S
Sbjct: 220 DLLHKSIQVEQQLKRKSVTKKSSSNYNSF--SWKDKNKKEVAVTLS 263

[Close]

BLAST of CSPI01G24750 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 40/107 (37.38%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           QKLQ+L QG +SV +Y++E++  M R +++E  +  M +F N LN +IA+ V+LQ Y D+
Sbjct: 157 QKLQSLTQGYRSVDDYHKEMEIAMIRANVEEDREATMARFLNGLNWDIANVVELQHYVDL 216

Query: 63  KEILHLAIKVEKQLSSKRTR-YNSSKPYSSFNSSWKKENKREYRSRI 109
           ++++H+AIKVE++L  K TR + +   ++S+  + +K+ +  ++S+I
Sbjct: 217 EDMVHMAIKVEQRLKRKETRSFQNPDSFASWRPNGRKDERVVFKSKI 263

[Close]

BLAST of CSPI01G24750 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-11
Identity = 41/101 (40.59%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           QKLQ+L QG +SV +Y++E++  M R +++E  +  M +F N LN++IA+ V+LQ Y ++
Sbjct: 286 QKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREATMARFLNGLNRDIANVVELQHYVEL 345

Query: 63  KEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKRE 104
           ++++H+AIKVE+QL  K TR +   P SS  +SW+   +++
Sbjct: 346 EDMVHMAIKVERQLKRKETR-SFQNPGSS--ASWRXNGRKD 383

[Close]

BLAST of CSPI01G24750 vs. TrEMBL
Match: Q9SYE8_ARATH (Putative polyprotein OS=Arabidopsis thaliana GN=F9M13.15 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           Q+L+ L QG+K+V  Y+ E++TLM R DL E  + +M++F   LN+EI D+++ Q Y ++
Sbjct: 185 QRLRNLVQGSKTVEEYFLEMETLMLRADLQEDGEAVMSRFMGGLNREIQDRLETQHYVEL 244

Query: 63  KEILHLAIKVEKQLSSKRTRYNSSKP-YSSFNSSWKKENKREYRS 107
           +E+LH A+  E+Q+  K  R + +K  YSS   S++KE K  Y++
Sbjct: 245 EEMLHKAVMFEQQIKRKNARSSHTKTNYSSGKPSYQKEEKFGYQN 289

[Close]

BLAST of CSPI01G24750 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           +KLQ+L QG+ SV +YY+E++  M R++++E  +  M +F   L KE+ D V+LQ Y ++
Sbjct: 124 RKLQSLTQGSMSVEDYYKEMELAMIRVNVEEDYEVTMARFIGGLKKEMVDVVELQHYVEV 183

Query: 63  KEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWK---KENK 102
           +++LH AI+VE+Q+ SK      SK  SS NS W+   K NK
Sbjct: 184 EDLLHKAIQVERQMKSK----GPSKVNSSSNSLWRSNWKNNK 221

[Close]

BLAST of CSPI01G24750 vs. NCBI nr
Match: gi|922547170|ref|XP_013601450.1| (PREDICTED: uncharacterized protein LOC106308891 [Brassica oleracea var. oleracea])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-13
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYC 60
           + +KL+AL+QG+KSV  YYEE + L +RLDL+E  +  M QFF+ L + ++ KV++ +Y 
Sbjct: 246 LQRKLRALKQGSKSVEEYYEEFEKLRNRLDLNEDEEATMAQFFDGLQERLSCKVEIHVYA 305

Query: 61  DIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKK 99
           D+K++ HLAI+ E+ +  K ++  S   ++S NS++ K
Sbjct: 306 DMKDLFHLAIQAEQHIKKKSSKGKSQVSWNSSNSNYNK 343

[Close]

BLAST of CSPI01G24750 vs. NCBI nr
Match: gi|923534349|ref|XP_013708963.1| (PREDICTED: uncharacterized protein LOC106412585 [Brassica napus])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-13
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYC 60
           + +KL+AL+QG+KSV  YYEE + L +RLDL+E  +  M QFF+ L + ++ KV++ +Y 
Sbjct: 246 LQRKLRALKQGSKSVEEYYEEFEKLRNRLDLNEDEEATMAQFFDGLQERLSCKVEIHVYA 305

Query: 61  DIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKK 99
           D+K++ HLAI+ E+ +  K ++  S   ++S NS++ K
Sbjct: 306 DMKDLFHLAIQAEQHIKKKSSKGKSQVSWNSSNSNYNK 343

[Close]

BLAST of CSPI01G24750 vs. NCBI nr
Match: gi|727649136|ref|XP_010495144.1| (PREDICTED: uncharacterized protein LOC104772204 [Camelina sativa])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 45/106 (42.45%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           Q+L+ L QG+K+V  Y++E++TL+ R D+ E  +T+M++F   LN+EI D+++ Q Y +I
Sbjct: 161 QRLRNLVQGSKTVEEYFKEMETLLLRADVHEDGETMMSRFMGGLNREIQDRLETQHYVEI 220

Query: 63  KEILHLAIKVEKQLSSKRTR--YNSSK-PYSSFNSSWKKENKREYR 106
           +E+LH A+  E+Q+  K +R  Y+++K  YSS  SS++KE+K +YR
Sbjct: 221 EEMLHKAVMFEQQIKRKNSRSSYSTAKTSYSSGKSSYQKEDKPDYR 266

[Close]

BLAST of CSPI01G24750 vs. NCBI nr
Match: gi|1012335421|gb|KYP46751.1| (hypothetical protein KK1_031655 [Cajanus cajan])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 4   KLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIK 63
           KLQ L QG K V  Y++E+D LM + +++E  +  M +F N LN +I D V+LQ + +I+
Sbjct: 160 KLQKLSQGTKRVEEYFKELDLLMMQANIEEDPELTMARFINGLNNDICDVVELQEFVEIE 219

Query: 64  EILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKREYRSRIS 110
           ++LH +I+VE+QL  K     SS  Y+SF  SWK +NK+E    +S
Sbjct: 220 DLLHKSIQVEQQLKRKSVTKKSSSNYNSF--SWKDKNKKEVAVTLS 263

[Close]

BLAST of CSPI01G24750 vs. NCBI nr
Match: gi|727650713|ref|XP_010496060.1| (PREDICTED: uncharacterized protein LOC104773180 [Camelina sativa])

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 45/106 (42.45%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 3   QKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDI 62
           Q+L+ L QG+K+V  Y++E++TL+ R D+ E  +T+M++F   LN+EI D+++ Q Y +I
Sbjct: 161 QRLRNLVQGSKTVEEYFKEMETLLLRADVHEDGETMMSRFMGGLNREIQDRLETQHYVEI 220

Query: 63  KEILHLAIKVEKQLSSKRTR--YNSSK-PYSSFNSSWKKENKREYR 106
           +E+LH A+  E+Q+  K +R  Y+++K  YSS  SS++KE+K  YR
Sbjct: 221 EEMLHKAVMFEQQIKRKNSRSSYSTAKTSYSSGKSSYQKEDKPGYR 266

The following BLAST results are available for this feature:

BLAST of CSPI01G24750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G24750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RW41_CAJCA	1.1e-12	42.45	Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1	[more]
A5AZG1_VITVI	2.7e-11	37.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1	[more]
A5AMK2_VITVI	3.5e-11	40.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
Q9SYE8_ARATH	1.3e-10	40.00	Putative polyprotein OS=Arabidopsis thaliana GN=F9M13.15 PE=4 SV=1	[more]
A0A151U9W8_CAJCA	1.8e-10	42.16	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1	[more]

BLAST of CSPI01G24750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G24750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922547170\|ref\|XP_013601450.1\|	5.4e-13	40.82	PREDICTED: uncharacterized protein LOC106308891 [Brassica oleracea var. oleracea...	[more]
gi\|923534349\|ref\|XP_013708963.1\|	5.4e-13	40.82	PREDICTED: uncharacterized protein LOC106412585 [Brassica napus]	[more]
gi\|727649136\|ref\|XP_010495144.1\|	1.2e-12	42.45	PREDICTED: uncharacterized protein LOC104772204 [Camelina sativa]	[more]
gi\|1012335421\|gb\|KYP46751.1\|	1.6e-12	42.45	hypothetical protein KK1_031655 [Cajanus cajan]	[more]
gi\|727650713\|ref\|XP_010496060.1\|	3.5e-12	42.45	PREDICTED: uncharacterized protein LOC104773180 [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G24750.1	CSPI01G24750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 2..47 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G24750	Cucurbita maxima (Rimu)	cmacpiB210
CSPI01G24750	Cucurbita maxima (Rimu)	cmacpiB221
CSPI01G24750	Cucurbita maxima (Rimu)	cmacpiB396
CSPI01G24750	Cucurbita maxima (Rimu)	cmacpiB406
CSPI01G24750	Cucurbita maxima (Rimu)	cmacpiB657
CSPI01G24750	Cucurbita moschata (Rifu)	cmocpiB198
CSPI01G24750	Cucurbita moschata (Rifu)	cmocpiB207
CSPI01G24750	Cucurbita moschata (Rifu)	cmocpiB384
CSPI01G24750	Cucurbita moschata (Rifu)	cmocpiB392
CSPI01G24750	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G24750	Melon (DHL92) v3.5.1	cpimeB014
CSPI01G24750	Melon (DHL92) v3.5.1	cpimeB085
CSPI01G24750	Watermelon (Charleston Gray)	cpiwcgB052
CSPI01G24750	Watermelon (Charleston Gray)	cpiwcgB055
CSPI01G24750	Watermelon (97103) v1	cpiwmB027
CSPI01G24750	Watermelon (97103) v1	cpiwmB030
CSPI01G24750	Watermelon (97103) v1	cpiwmB062
CSPI01G24750	Cucurbita pepo (Zucchini)	cpecpiB026
CSPI01G24750	Cucurbita pepo (Zucchini)	cpecpiB508
CSPI01G24750	Bottle gourd (USVL1VR-Ls)	cpilsiB036
CSPI01G24750	Bottle gourd (USVL1VR-Ls)	cpilsiB022
CSPI01G24750	Melon (DHL92) v3.6.1	cpimedB015
CSPI01G24750	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G24750	Silver-seed gourd	carcpiB0432
CSPI01G24750	Silver-seed gourd	carcpiB0458
CSPI01G24750	Silver-seed gourd	carcpiB0460
CSPI01G24750	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G24750	Watermelon (97103) v2	cpiwmbB047
CSPI01G24750	Watermelon (97103) v2	cpiwmbB050
CSPI01G24750	Wax gourd	cpiwgoB040
CSPI01G24750	Wild cucumber (PI 183967)	cpicpiB044
CSPI01G24750	Cucumber (Gy14) v1	cgycpiB262