CSPI01G24150 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G24150
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 19544448 .. 19546409 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCACATATAGCAGTTCTATCTCCTCAAGTCGAGTTGTACAGAAACCAGCAGCATGCGTTGCAAATGGAGCAAAAAAGACTGAATCAAAAGATTTTGAATTGCTCAAGAAACAAGCTCATCAAAGACGGTGACCTTTTTAATATATATATTCAATTATTTACGTATTTCCGTTTGATAACTATTTCATATTTTAGTTTTCGTTTTTATATAGTTTTTCTTACCCTATCCTTTTATTACTATAGTGATTATTTTAAACCTAAACAATTTAATTTAATTGTTAGTTAAATTTTAAAAATAAATAAAAATATTTTTTTCATTTTCAAATTTTAATTAGAGTTTCTAAAACGTACTTTGTTACAAAATCCACTAATAAGAAATACAAATAAACGTAAAGGGAGATCGACATACATATATACATGGTTTACTAATAGTGTACTGTTAGCAGAGGAAAATTAACAATATCATTAGAGAGAAGTATTTAGTACAAATGATGCCACGTCTCTAACCCTAGAGTCATAGTAGTAAATAACTATAAATAATTACACACGCTTAATAAGAATTCAATACATTCCATCCTACTCATAACCAAAAAAATGGTTTGAATGTTCTTTAAATATGTAACGATTCGATTAAAGACAAAGTAAAAAAGAACTAATTAAGGCATTGAAATTTATATATATGTGTGTGTTTGAAGGAAATTGATTTAGGGTTTGGGTTTTGAAAATGAAAATATTGCAGCTGAAATAGAAGAGAATAGAGCTGAAGTGAATAGGCTTAGGGAACTCCATATGAAGCAGCAGTTTGAAGCCAATGGTTGGGATAGTAATGTTTTTCAGATGCCATCCCCATCCCCATCGCTATCTCCATCTCCATCTCCATCGCCATCAGATTTTCATACATCTGAGTTGATCAACGTTGTCTCTCCCCCACCTAACTACGGTACTTTTTACTATCTTACATTCATCATTTCTTTTTATTCTTTGCTTATACAATTATTTACTCTTTTCTTATCAAATTAAAATAGTTTACACACAAACACATGCTGTTATAACTTAAATTAAAACAACCTACACCTTCTTACCTTGTTTCTCACATCCCTTCAAAAACACTCACACTCATATACATTCCAACCTTGAAACTAAAAAATTAAACTTAAACCAAGTTTCTAAAACTTAAAACACTGTTCGACAATTATTTGTTAATGAATCTTACTAACATTAGTTCTACCTATTAATTTCTTAGTTTTGTTACTATTTTTATAAGTATTTTAGAAAATAGTCAAGTTTTGAAAACTATATATTTAAACAATTGTTTTGAAAACTATATACTTGATTAAAAGAATTCGGGTAATGTAATTAAGAATACAAATAATTTTAGAAAAGATGAAAACCATAATAAATAAGTAATAAGAAAACAATTGCAATTTAAAATACTAATACTAAAAACTACTCCTTTTTTGTTCATTATTTAAAATTTTAATCAAGTTTTTGAAAATGTGTTTATAACGTAGGTAGACAGTAAAACAAGGGAAAAAAATTGGAGAAGCCAAGTAAGGACTAAAATTGAACAAACCACTTATGCATAAATCAATTAGTGAAAACATTAATCTACGTTTAAATCTTTATCCTTAATTTGAATGAGAATGATCTTGAAAATGTATAAATGCAATAAGTTACTAACCATGAAATGTATGATTTGAATATTCATGTTCATAGCAAAAGAAAATTGTAATAATCATTTGTTACTGTTTTGATTTCTTCTTTCTCCCTATTTGAGGATTTTATGTGTGCAGTAGCAGAAAATGGGGAGAGAACGATAGGAGACAATGGGCTGGGCCGGTTCAACTCGATAGCCCGTCATCAAATGGTTGAGTACAAGTGGATGCCAACACCTGGGCTTCGTCAAGCTTCAAGGCCCAACTCCAACCAAATGATCTATGAAATGGAAAGGCCCAAC

mRNA sequence

ATGCAGGCACATATAGCAGTTCTATCTCCTCAAGTCGAGTTGTACAGAAACCAGCAGCATGCGTTGCAAATGGAGCAAAAAAGACTGAATCAAAAGATTTTGAATTGCTCAAGAAACAAGCTCATCAAAGACGCTGAAATAGAAGAGAATAGAGCTGAAGTGAATAGGCTTAGGGAACTCCATATGAAGCAGCAGTTTGAAGCCAATGGTTGGGATAGTAATGTTTTTCAGATGCCATCCCCATCCCCATCGCTATCTCCATCTCCATCTCCATCGCCATCAGATTTTCATACATCTGAGTTGATCAACGTTGTCTCTCCCCCACCTAACTACGTAGCAGAAAATGGGGAGAGAACGATAGGAGACAATGGGCTGGGCCGGTTCAACTCGATAGCCCGTCATCAAATGGTTGAGTACAAGTGGATGCCAACACCTGGGCTTCGTCAAGCTTCAAGGCCCAACTCCAACCAAATGATCTATGAAATGGAAAGGCCCAAC

Coding sequence (CDS)

ATGCAGGCACATATAGCAGTTCTATCTCCTCAAGTCGAGTTGTACAGAAACCAGCAGCATGCGTTGCAAATGGAGCAAAAAAGACTGAATCAAAAGATTTTGAATTGCTCAAGAAACAAGCTCATCAAAGACGCTGAAATAGAAGAGAATAGAGCTGAAGTGAATAGGCTTAGGGAACTCCATATGAAGCAGCAGTTTGAAGCCAATGGTTGGGATAGTAATGTTTTTCAGATGCCATCCCCATCCCCATCGCTATCTCCATCTCCATCTCCATCGCCATCAGATTTTCATACATCTGAGTTGATCAACGTTGTCTCTCCCCCACCTAACTACGTAGCAGAAAATGGGGAGAGAACGATAGGAGACAATGGGCTGGGCCGGTTCAACTCGATAGCCCGTCATCAAATGGTTGAGTACAAGTGGATGCCAACACCTGGGCTTCGTCAAGCTTCAAGGCCCAACTCCAACCAAATGATCTATGAAATGGAAAGGCCCAAC

Homology

[Close]

BLAST of CSPI01G24150 vs. TrEMBL
Match: A0A067LMX8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++  IAVL PQV +YRNQQH LQMEQKRL+Q++   +  K++KDAEIEEN+AEVNRLR+L
Sbjct: 145 LENKIAVLHPQVMMYRNQQHLLQMEQKRLSQEMSARATTKILKDAEIEENKAEVNRLRQL 204

Query: 61  HMKQQFE-------ANGW-----DSNVFQMPSPSPSLSPSPSPSPSDFHTSELINVVSPP 109
           H+ QQ +        N W     +SN+ Q  +       S S    + +  E+  V   P
Sbjct: 205 HLTQQHQKMQEHLMVNAWKMQMMNSNLTQSDTEQTLFMNSNSAQIGEMNEEEMDEVNQQP 264

[Close]

BLAST of CSPI01G24150 vs. TrEMBL
Match: A0A061GXH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++A IAVL+PQV LYRNQ+H LQMEQK L Q+I  C+  K + DAE+E N+AE+NRLR+L
Sbjct: 221 LEAQIAVLAPQVALYRNQKHYLQMEQKGLKQRIAACAARKSLVDAEVEMNKAELNRLRQL 280

Query: 61  HMKQQFE-------ANGWDSNVFQMPSPSPSLSPS 89
            M QQ +         GW+   F +   +P LS S
Sbjct: 281 QMAQQQQKLQAQASMGGWEHG-FTLQMVNPGLSQS 314

[Close]

BLAST of CSPI01G24150 vs. TrEMBL
Match: A0A067FHX4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++  IA+L+PQV LY+N Q  LQ EQ+ L++++   + N +  +AEI +N+AEV RLR+L
Sbjct: 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210

Query: 61  HMKQQ----FEANG---WDSNVFQMPSPSPSLSPSP 90
           H+ QQ     E NG   WD  + ++ + +   +P P
Sbjct: 211 HLYQQQLKMLEQNGLPVWDCGLDELMNSTWCPTPGP 246

[Close]

BLAST of CSPI01G24150 vs. NCBI nr
Match: gi|778665222|ref|XP_011648516.1| (PREDICTED: basic leucine zipper 34-like [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 2.3e-84
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++AHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL
Sbjct: 128 LEAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 187

Query: 61  HMKQQFEANGWDSNVFQMPSPSPSLSPSPSPSPSDFHTSELINVVSPPPNYVAENGERTI 120
           HMKQQFEANGWDSNVFQMPSPSPSL  SPSPSPSDFHTSELINVVSPPPNYVAENGERTI
Sbjct: 188 HMKQQFEANGWDSNVFQMPSPSPSL--SPSPSPSDFHTSELINVVSPPPNYVAENGERTI 247

Query: 121 GDNGLGRFNSIARHQMVEYKWMPTPGLRQASRPNSNQMIYEMERPN 167
           GDNGLGRFNSIARHQMVEYKWMPTPGLRQASRPNSNQMIYEMERPN
Sbjct: 248 GDNGLGRFNSIARHQMVEYKWMPTPGLRQASRPNSNQMIYEMERPN 291

[Close]

BLAST of CSPI01G24150 vs. NCBI nr
Match: gi|659115444|ref|XP_008457560.1| (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-70
Identity = 138/166 (83.13%), Postives = 146/166 (87.95%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++AHIAVLSPQVELYRNQQH LQMEQKRLNQKILNCSRNKLI+DAEIEENRAEVNRLREL
Sbjct: 128 LEAHIAVLSPQVELYRNQQHVLQMEQKRLNQKILNCSRNKLIRDAEIEENRAEVNRLREL 187

Query: 61  HMKQQFEANGWDSNVFQMPSPSPSLSPSPSPSPSDFHTSELINVVSPPPNYVAENGERTI 120
           HMKQQ EANGWDSNVFQMPSPSPS        PS FHTSEL NVVSPPP Y  ENGERT+
Sbjct: 188 HMKQQCEANGWDSNVFQMPSPSPS--------PSHFHTSELTNVVSPPPLYATENGERTV 247

Query: 121 GDNGLGRFNSIARHQMVEYKWMPTPGLRQASRPNSNQMIYEMERPN 167
            +NGLG+FNS  RH+MVEYKWMPTPGLRQAS+PN NQM YEMERPN
Sbjct: 248 EENGLGQFNSTVRHKMVEYKWMPTPGLRQASKPNFNQMSYEMERPN 285

[Close]

BLAST of CSPI01G24150 vs. NCBI nr
Match: gi|1000972826|ref|XP_015573025.1| (PREDICTED: basic leucine zipper 34-like isoform X2 [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++  IAVL PQV  ++NQQH LQMEQK+LNQ++   + NK +KDAEIEEN+AEVNRLR+L
Sbjct: 141 LEVEIAVLRPQVVRFKNQQHLLQMEQKKLNQEVSGRANNKSLKDAEIEENKAEVNRLRQL 200

Query: 61  HMKQQ 66
           H+ QQ
Sbjct: 201 HLAQQ 205

[Close]

BLAST of CSPI01G24150 vs. NCBI nr
Match: gi|1000972824|ref|XP_015573024.1| (PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++  IAVL PQV  ++NQQH LQMEQK+LNQ++   + NK +KDAEIEEN+AEVNRLR+L
Sbjct: 141 LEVEIAVLRPQVVRFKNQQHLLQMEQKKLNQEVSGRANNKSLKDAEIEENKAEVNRLRQL 200

Query: 61  HMKQQ 66
           H+ QQ
Sbjct: 201 HLAQQ 205

[Close]

BLAST of CSPI01G24150 vs. NCBI nr
Match: gi|802541691|ref|XP_012080512.1| (PREDICTED: basic leucine zipper 34 [Jatropha curcas])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1


Query: 1   MQAHIAVLSPQVELYRNQQHALQMEQKRLNQKILNCSRNKLIKDAEIEENRAEVNRLREL 60
           ++  IAVL PQV +YRNQQH LQMEQKRL+Q++   +  K++KDAEIEEN+AEVNRLR+L
Sbjct: 145 LENKIAVLHPQVMMYRNQQHLLQMEQKRLSQEMSARATTKILKDAEIEENKAEVNRLRQL 204

Query: 61  HMKQQFE-------ANGW-----DSNVFQMPSPSPSLSPSPSPSPSDFHTSELINVVSPP 109
           H+ QQ +        N W     +SN+ Q  +       S S    + +  E+  V   P
Sbjct: 205 HLTQQHQKMQEHLMVNAWKMQMMNSNLTQSDTEQTLFMNSNSAQIGEMNEEEMDEVNQQP 264

The following BLAST results are available for this feature:

BLAST of CSPI01G24150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G24150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067LMX8_JATCU	1.1e-11	43.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1	[more]
A0A061GXH3_THECC	1.8e-11	49.47	Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1	[more]
A0A067FHX4_CITSI	5.1e-06	38.54	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 ...	[more]

BLAST of CSPI01G24150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G24150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665222\|ref\|XP_011648516.1\|	2.3e-84	97.59	PREDICTED: basic leucine zipper 34-like [Cucumis sativus]	[more]
gi\|659115444\|ref\|XP_008457560.1\|	1.9e-70	83.13	PREDICTED: transcription factor VIP1-like [Cucumis melo]	[more]
gi\|1000972826\|ref\|XP_015573025.1\|	1.8e-12	63.08	PREDICTED: basic leucine zipper 34-like isoform X2 [Ricinus communis]	[more]
gi\|1000972824\|ref\|XP_015573024.1\|	1.8e-12	63.08	PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis]	[more]
gi\|802541691\|ref\|XP_012080512.1\|	1.5e-11	43.33	PREDICTED: basic leucine zipper 34 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009410	response to xenobiotic stimulus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G24150.1	CSPI01G24150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 12..32 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G24150	CmaCh13G000470	Cucurbita maxima (Rimu)	cmacpiB220
CSPI01G24150	Cp4.1LG20g07970	Cucurbita pepo (Zucchini)	cpecpiB507
CSPI01G24150	Carg26035	Silver-seed gourd	carcpiB0648

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G24150	Melon (DHL92) v3.6.1	cpimedB024
CSPI01G24150	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G24150	Silver-seed gourd	carcpiB0557
CSPI01G24150	Silver-seed gourd	carcpiB0691
CSPI01G24150	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G24150	Watermelon (97103) v2	cpiwmbB044
CSPI01G24150	Wax gourd	cpiwgoB048
CSPI01G24150	Cucumber (Gy14) v1	cgycpiB224
CSPI01G24150	Cucurbita maxima (Rimu)	cmacpiB430
CSPI01G24150	Cucurbita maxima (Rimu)	cmacpiB697
CSPI01G24150	Cucurbita maxima (Rimu)	cmacpiB699
CSPI01G24150	Cucurbita moschata (Rifu)	cmocpiB206
CSPI01G24150	Cucurbita moschata (Rifu)	cmocpiB420
CSPI01G24150	Cucurbita moschata (Rifu)	cmocpiB691
CSPI01G24150	Cucurbita moschata (Rifu)	cmocpiB692
CSPI01G24150	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G24150	Melon (DHL92) v3.5.1	cpimeB025
CSPI01G24150	Watermelon (Charleston Gray)	cpiwcgB050
CSPI01G24150	Watermelon (97103) v1	cpiwmB023
CSPI01G24150	Cucurbita pepo (Zucchini)	cpecpiB382
CSPI01G24150	Cucurbita pepo (Zucchini)	cpecpiB531
CSPI01G24150	Bottle gourd (USVL1VR-Ls)	cpilsiB031