CSPI01G23080 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23080
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING finger-like
LocationChr1 : 18731587 .. 18732127 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTGTTTTACATAAAAGAACCAATCAAACCTTCTTCTTCAATTCAGCCATGTCTTCCCCATCTCCTCCACCGGTACCGGAATCCACAACACGGCCACCAATTCCTCCGCTACCGATCCACCACAGTAAGTTTCACCTAACGACCAGATTAACAATCGCAAGCGGGTTGATGTTGGTGGCGGTGATTTGTGCTCTAATGATTTTGTTCATGTTCATATTTCATTATTGTTACCATCAACGACTCCTTGTAGTCCACGGCGACATAGAGTCAAGCCAAGTATCGGGAACTGCAGCGGAGGAGACGTCGGAGGAAATTCCGGCAGCCGTGAAGATGGGTTTTAGAGAAATAAAAACAGGGGAAATTGGGGATTGCGATGGGAGGAAGTGTGCGTTATGTATTGAGGGATTTGGGGAAGAGGAGATTTGTGGAGTAATTGAGAATTGTGGCCATTTTTTTCATAGGGATTGTATTAATCGGTGGCTTAGAATTGAGAGGCGTTGCCCTCTTTGCCGCTGCTTTGTTGGTCATAGGGCTTTGTGA

mRNA sequence

ATGTCTTCCCCATCTCCTCCACCGGTACCGGAATCCACAACACGGCCACCAATTCCTCCGCTACCGATCCACCACAGTAAGTTTCACCTAACGACCAGATTAACAATCGCAAGCGGGTTGATGTTGGTGGCGGTGATTTGTGCTCTAATGATTTTGTTCATGTTCATATTTCATTATTGTTACCATCAACGACTCCTTGTAGTCCACGGCGACATAGAGTCAAGCCAAGTATCGGGAACTGCAGCGGAGGAGACGTCGGAGGAAATTCCGGCAGCCGTGAAGATGGGTTTTAGAGAAATAAAAACAGGGGAAATTGGGGATTGCGATGGGAGGAAGTGTGCGTTATGTATTGAGGGATTTGGGGAAGAGGAGATTTGTGGAGTAATTGAGAATTGTGGCCATTTTTTTCATAGGGATTGTATTAATCGGTGGCTTAGAATTGAGAGGCGTTGCCCTCTTTGCCGCTGCTTTGTTGGTCATAGGGCTTTGTGA

Coding sequence (CDS)

ATGTCTTCCCCATCTCCTCCACCGGTACCGGAATCCACAACACGGCCACCAATTCCTCCGCTACCGATCCACCACAGTAAGTTTCACCTAACGACCAGATTAACAATCGCAAGCGGGTTGATGTTGGTGGCGGTGATTTGTGCTCTAATGATTTTGTTCATGTTCATATTTCATTATTGTTACCATCAACGACTCCTTGTAGTCCACGGCGACATAGAGTCAAGCCAAGTATCGGGAACTGCAGCGGAGGAGACGTCGGAGGAAATTCCGGCAGCCGTGAAGATGGGTTTTAGAGAAATAAAAACAGGGGAAATTGGGGATTGCGATGGGAGGAAGTGTGCGTTATGTATTGAGGGATTTGGGGAAGAGGAGATTTGTGGAGTAATTGAGAATTGTGGCCATTTTTTTCATAGGGATTGTATTAATCGGTGGCTTAGAATTGAGAGGCGTTGCCCTCTTTGCCGCTGCTTTGTTGGTCATAGGGCTTTGTGA
Homology
[Close]
BLAST of CSPI01G23080 vs. Swiss-Prot
Match: RN128_XENLA (E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-09
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1 

Query: 86  SEEIPAAVKMGFREIKTGE-IGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRW 145
           +E   A  K+  R IK G+ +   DG  CA+CIE +   ++  ++  C HFFH++CI+ W
Sbjct: 232 AEAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRIL-TCNHFFHKNCIDPW 291

Query: 146 LRIERRCPLCRC 157
           L   R CP+C+C
Sbjct: 292 LLEHRTCPMCKC 302

[Close]
BLAST of CSPI01G23080 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-08
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 

Query: 94  KMGFREIKTGEIG-DCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCP 153
           K+GF ++K  + G   +G  C++C+  F E+E   ++  C H FH  CI+RWL+    CP
Sbjct: 135 KIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCP 194

Query: 154 LCR 156
           LCR
Sbjct: 195 LCR 197

[Close]
BLAST of CSPI01G23080 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 43/159 (27.04%), Postives = 65/159 (40.88%), Query Frame = 1 

Query: 16  PPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYHQRLL---VVHGDI 75
           PP PP P       L T + +   ++L      L ++F    H    +R+    V  GD 
Sbjct: 28  PPPPPPPPRELSLLLPTSICVVGSIILF-----LFLVFFLYLHITQQRRISAASVTPGDT 87

Query: 76  ESSQVSGTAAEETSEE----------------IPAAVKMGFREIKTGEIGDCDGRKCALC 135
              +      E    +                I +   +GF   K GE G  DG +C++C
Sbjct: 88  NQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGF---KKGE-GIIDGTECSVC 147

Query: 136 IEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           +  F E+E   ++  C H FH +CI+ WL   + CPLCR
Sbjct: 148 LNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR 177

[Close]
BLAST of CSPI01G23080 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 1 

Query: 40  LMLVAVICALMIL---FMFIFHYCYH-------QRLLVVH---GDIESSQVSGTAAEETS 99
           + L+ ++ + +IL   +  I  YC+        + L + H   G   S+Q   T  +  +
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 100 EEIPAAVKMGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLR 159
           E +  ++ +   + K+G+ G  DG  C++C+  F E E   ++  C H FH  CI+ WL+
Sbjct: 119 ESMIKSITV--YKYKSGD-GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 178

[Close]
BLAST of CSPI01G23080 vs. Swiss-Prot
Match: ATL28_ARATH (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 19/47 (40.43%), Postives = 30/47 (63.83%), Query Frame = 1 

Query: 110 GRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRC 157
           G +CA+C+  F +E+   +I  C H FH +CI+ W  + + CP+CRC
Sbjct: 100 GTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRC 146

[Close]
BLAST of CSPI01G23080 vs. TrEMBL
Match: A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 1 

Query: 7   PPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYHQRLL 66
           P     TT PP PP P    +  +    T+    +  A + AL ++F++    C  ++  
Sbjct: 4   PTAVSPTTMPPPPPPP---DELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 63

Query: 67  VVHGDIESSQVSGTAAEET----SEEIP-----AAVKMGFREIKTGEIGDCDGRK--CAL 126
             +GDIE  ++     +E+    +E+ P     +   +  R  + G  G   G+   C++
Sbjct: 64  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 123

Query: 127 CIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           C++ F E EIC ++  C H FHR CI+RWL  ER CP+CR
Sbjct: 124 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCR 160

[Close]
BLAST of CSPI01G23080 vs. TrEMBL
Match: A0A061GXV2_THECC (RING-H2 finger protein ATL5F, putative OS=Theobroma cacao GN=TCM_041834 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = 1 

Query: 83  EETSEEIPAAVKMGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCIN 142
           ++T + +PA     ++ I      +C   +CA+C+E F + ++C V+  C H +H+ CI+
Sbjct: 79  QQTPKRVPAGTVATYKNINQETEANCTADECAMCLEEFIDRDLCKVLSKCKHMYHQRCID 138

Query: 143 RWLRIERRCPLCR 156
           RWL     CPLCR
Sbjct: 139 RWLLDHSHCPLCR 151

[Close]
BLAST of CSPI01G23080 vs. TrEMBL
Match: A0A0A0LXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 42/124 (33.87%), Postives = 61/124 (49.19%), Query Frame = 1 

Query: 42  LVAVICALMILFMFIFHYCYHQRLLVVHGDIESSQVSGTAA-------EETSEEIPAAVK 101
           L+A IC  +I++   F + +        G+ ES   +GT         E    +I   V 
Sbjct: 26  LLAAICFAIIVYFLSFTFYFKT------GNNESEFDTGTVEDRLPVFREREIVQIETMVF 85

Query: 102 MGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLC 159
             +RE K  E  + D  +C +C+  F + + C  ++ CGH FH  CI+RWLR ER CPLC
Sbjct: 86  SYYREAKGSE--NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLC 141

[Close]
BLAST of CSPI01G23080 vs. TrEMBL
Match: G4T7T3_PIRID (Uncharacterized protein OS=Piriformospora indica (strain DSM 11827) GN=PIIN_01202 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 25/74 (33.78%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 82  AEETSEEIPAAVKMGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCI 141
           ++++ EE+P+     F E  T ++   +G  CA+C+E +  E+ C  +  C HF+H+DC+
Sbjct: 867 SQKSLEELPSGTYKEFSEGATEKVVGDNGN-CAICLEDYQPEDACMKLPRCSHFYHKDCV 926

Query: 142 NRWLRIERRCPLCR 156
             WL+  + CP+CR
Sbjct: 927 KEWLKSAKTCPVCR 939

[Close]
BLAST of CSPI01G23080 vs. TrEMBL
Match: I1IE86_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g56150 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1 

Query: 30  LTTRLTIASGLMLVAVICALMILFMFIFHYCYHQRLLV-VHGDIESSQVSGTAAEETSEE 89
           L+T L +A G+ L+ ++  L+++++    +   +   V    D E   V G   EE  E 
Sbjct: 6   LSTVLLVA-GVTLIVLVNILVVVWVLRRGFIARRLSRVGERADQEGGAVGGLTEEEVGE- 65

Query: 90  IPAAVKMGFREIKTGEI--GDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLR 149
           +P       R+ K  ++  G+  G +CA+C+E   + E C V+  CGH FH DC+  WLR
Sbjct: 66  LPC------RDFKPDQLAAGELGGGECAVCLEALKDGERCAVLPRCGHGFHADCVGSWLR 125

Query: 150 IERRCPLCRCFV 159
             R CP+CR  V
Sbjct: 126 KSRLCPVCRAEV 129

[Close]
BLAST of CSPI01G23080 vs. TAIR10
Match: AT2G37150.3 (AT2G37150.3 RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1 

Query: 111 RKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           RKCA+C+E + E+E  G ++ CGH +H  CI +WL ++  CP+C+
Sbjct: 543 RKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCPICK 587

[Close]
BLAST of CSPI01G23080 vs. TAIR10
Match: AT4G17905.1 (AT4G17905.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 

Query: 94  KMGFREIKTGEIG-DCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCP 153
           K+GF ++K  + G   +G  C++C+  F E+E   ++  C H FH  CI+RWL+    CP
Sbjct: 135 KIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCP 194

Query: 154 LCR 156
           LCR
Sbjct: 195 LCR 197

[Close]
BLAST of CSPI01G23080 vs. TAIR10
Match: AT2G28920.1 (AT2G28920.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 34/114 (29.82%), Postives = 58/114 (50.88%), Query Frame = 1 

Query: 45  VICALMILFMFIFHYCYHQRLLVVHGDIESSQVSGTAAEETSEEIPAAVKMGFREIKTGE 104
           V+  L ++F+ +F+        V++  +   ++     EE  E +P AV++   +   G+
Sbjct: 27  VLRLLCVVFIILFYGSIILLCFVMYPKLPKEEIGD---EEAGEPLPPAVRL--TKCGGGD 86

Query: 105 IGDCDGRK---CALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
            GD DG K   C +C+E F   ++  V+  C H FH DCI+ W   +  CP+CR
Sbjct: 87  GGDGDGVKADVCVICLEDFKVNDVVRVLVRCKHVFHVDCIDSWCFYKLTCPICR 135

[Close]
BLAST of CSPI01G23080 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 1 

Query: 40  LMLVAVICALMIL---FMFIFHYCYH-------QRLLVVH---GDIESSQVSGTAAEETS 99
           + L+ ++ + +IL   +  I  YC+        + L + H   G   S+Q   T  +  +
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 100 EEIPAAVKMGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLR 159
           E +  ++ +   + K+G+ G  DG  C++C+  F E E   ++  C H FH  CI+ WL+
Sbjct: 119 ESMIKSITV--YKYKSGD-GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 178

[Close]
BLAST of CSPI01G23080 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 43/159 (27.04%), Postives = 65/159 (40.88%), Query Frame = 1 

Query: 16  PPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYHQRLL---VVHGDI 75
           PP PP P       L T + +   ++L      L ++F    H    +R+    V  GD 
Sbjct: 28  PPPPPPPPRELSLLLPTSICVVGSIILF-----LFLVFFLYLHITQQRRISAASVTPGDT 87

Query: 76  ESSQVSGTAAEETSEE----------------IPAAVKMGFREIKTGEIGDCDGRKCALC 135
              +      E    +                I +   +GF   K GE G  DG +C++C
Sbjct: 88  NQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGF---KKGE-GIIDGTECSVC 147

Query: 136 IEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           +  F E+E   ++  C H FH +CI+ WL   + CPLCR
Sbjct: 148 LNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR 177

[Close]
BLAST of CSPI01G23080 vs. NCBI nr
Match: gi|659115454|ref|XP_008457565.1| (PREDICTED: E3 ubiquitin-protein ligase RNF149 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 99  EIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRCFV 158
           +IK GEIGDCDGRKCA+CIEGFG EEI GVIENCGHFFHRDCINRWL IERRCPLCRCFV
Sbjct: 26  KIKRGEIGDCDGRKCAICIEGFGVEEIGGVIENCGHFFHRDCINRWLTIERRCPLCRCFV 85

[Close]
BLAST of CSPI01G23080 vs. NCBI nr
Match: gi|743775625|ref|XP_010918197.1| (PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Elaeis guineensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1 

Query: 45  VICALMILFMFI-FHYCYHQRLLVVHGDIESSQVSGTAAEETSEEIPAAVKMGFREIKTG 104
           V   LM+L   I   +C H RLL+  GD    +V G   EE             +E++ G
Sbjct: 8   VFLGLMVLCAGIGVVFCVHLRLLL--GDGVWEEVRGLTEEEV------------KELEEG 67

Query: 105 EIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           ++G  DG +CA+C+E   E E+  V+  C H FH  C++ WLR+   CPLCR
Sbjct: 68  KVGAADGAECAVCLEEMVEGEVARVLPGCRHAFHGPCVDNWLRLRSACPLCR 105

[Close]
BLAST of CSPI01G23080 vs. NCBI nr
Match: gi|778661462|ref|XP_004151031.2| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 1 

Query: 7   PPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYHQRLL 66
           P     TT PP PP P    +  +    T+    +  A + AL ++F++    C  ++  
Sbjct: 4   PTAVSPTTMPPPPPPP---DELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 63

Query: 67  VVHGDIESSQVSGTAAEET----SEEIP-----AAVKMGFREIKTGEIGDCDGRK--CAL 126
             +GDIE  ++     +E+    +E+ P     +   +  R  + G  G   G+   C++
Sbjct: 64  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 123

Query: 127 CIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           C++ F E EIC ++  C H FHR CI+RWL  ER CP+CR
Sbjct: 124 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCR 160

[Close]
BLAST of CSPI01G23080 vs. NCBI nr
Match: gi|659115462|ref|XP_008457570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.0e-09
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 1 

Query: 4   PSPPPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYHQ 63
           PSPPP P+         LP+            +    + VA + AL ++F++    CY +
Sbjct: 2   PSPPPPPDD--------LPVGFLS-------ALDLDFLNVAGLSALAMMFIYFIFTCYER 61

Query: 64  RLLVVHGDIESSQVSGTAAEET--------SEEIPAA-VKMGFREIKTGEIGDCDGRK-- 123
           +    +GDIE  Q+     +E+        S   P++   +  R  + G  G   G+   
Sbjct: 62  KFWNRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNAD 121

Query: 124 CALCIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCR 156
           C++C++ F E EIC ++  C H FHR CI++WL  ER CP+CR
Sbjct: 122 CSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCR 149

[Close]
BLAST of CSPI01G23080 vs. NCBI nr
Match: gi|590589321|ref|XP_007016413.1| (RING-H2 finger protein ATL5F, putative [Theobroma cacao])

HSP 1 Score: 68.9 bits (167), Expect = 9.1e-09
Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = 1 

Query: 83  EETSEEIPAAVKMGFREIKTGEIGDCDGRKCALCIEGFGEEEICGVIENCGHFFHRDCIN 142
           ++T + +PA     ++ I      +C   +CA+C+E F + ++C V+  C H +H+ CI+
Sbjct: 79  QQTPKRVPAGTVATYKNINQETEANCTADECAMCLEEFIDRDLCKVLSKCKHMYHQRCID 138

Query: 143 RWLRIERRCPLCR 156
           RWL     CPLCR
Sbjct: 139 RWLLDHSHCPLCR 151

The following BLAST results are available for this feature:
BLAST of CSPI01G23080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN128_XENLA5.4e-0938.89E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2 SV=2[more]
ATL53_ARATH2.7e-0839.68Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2[more]
ATL55_ARATH2.3e-0727.04E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL52_ARATH2.3e-0728.79RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL28_ARATH2.3e-0740.43RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2 SV=1[more]
BLAST of CSPI01G23080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0H1_CUCSA3.7e-0930.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1[more]
A0A061GXV2_THECC6.4e-0934.25RING-H2 finger protein ATL5F, putative OS=Theobroma cacao GN=TCM_041834 PE=4 SV=... [more]
A0A0A0LXE1_CUCSA2.4e-0833.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1[more]
G4T7T3_PIRID3.2e-0833.78Uncharacterized protein OS=Piriformospora indica (strain DSM 11827) GN=PIIN_0120... [more]
I1IE86_BRADI3.2e-0832.58Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g56150 PE=4 SV=1[more]
BLAST of CSPI01G23080 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37150.31.1e-0944.44 RING/U-box superfamily protein[more]
AT4G17905.11.5e-0939.68 RING/U-box superfamily protein[more]
AT2G28920.12.6e-0929.82 RING/U-box superfamily protein[more]
AT5G17600.11.3e-0828.79 RING/U-box superfamily protein[more]
AT5G10380.11.3e-0827.04 RING/U-box superfamily protein[more]
BLAST of CSPI01G23080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115454|ref|XP_008457565.1|2.2e-2690.00PREDICTED: E3 ubiquitin-protein ligase RNF149 [Cucumis melo][more]
gi|743775625|ref|XP_010918197.1|1.4e-0936.61PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Elaeis guineensis][more]
gi|778661462|ref|XP_004151031.2|5.4e-0930.00PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|659115462|ref|XP_008457570.1|7.0e-0930.06PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|590589321|ref|XP_007016413.1|9.1e-0934.25RING-H2 finger protein ATL5F, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23080.1CSPI01G23080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 112..155
score: 2.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..154
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 113..155
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 109..155
score: 9.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 4..15
score: 6.5E-13coord: 32..155
score: 6.5
NoneNo IPR availablePANTHERPTHR14155:SF102RING ZINC FINGER-CONTAINING PROTEINcoord: 4..15
score: 6.5E-13coord: 32..155
score: 6.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 105..159
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23080Cla008240Watermelon (97103) v1cpiwmB023
CSPI01G23080ClCG03G001490Watermelon (Charleston Gray)cpiwcgB050
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23080Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23080Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23080Melon (DHL92) v3.6.1cpimedB007
CSPI01G23080Melon (DHL92) v3.6.1cpimedB024
CSPI01G23080Melon (DHL92) v3.6.1cpimedB057
CSPI01G23080Cucumber (Gy14) v2cgybcpiB002
CSPI01G23080Cucumber (Gy14) v2cgybcpiB097
CSPI01G23080Cucumber (Gy14) v2cgybcpiB159
CSPI01G23080Cucumber (Gy14) v2cgybcpiB252
CSPI01G23080Silver-seed gourdcarcpiB0177
CSPI01G23080Silver-seed gourdcarcpiB0336
CSPI01G23080Silver-seed gourdcarcpiB0363
CSPI01G23080Silver-seed gourdcarcpiB0415
CSPI01G23080Silver-seed gourdcarcpiB0476
CSPI01G23080Silver-seed gourdcarcpiB1034
CSPI01G23080Cucumber (Chinese Long) v3cpicucB032
CSPI01G23080Cucumber (Chinese Long) v3cpicucB000
CSPI01G23080Cucumber (Chinese Long) v3cpicucB037
CSPI01G23080Cucumber (Chinese Long) v3cpicucB055
CSPI01G23080Watermelon (97103) v2cpiwmbB015
CSPI01G23080Watermelon (97103) v2cpiwmbB027
CSPI01G23080Watermelon (97103) v2cpiwmbB044
CSPI01G23080Watermelon (97103) v2cpiwmbB058
CSPI01G23080Wax gourdcpiwgoB018
CSPI01G23080Wax gourdcpiwgoB048
CSPI01G23080Wild cucumber (PI 183967)cpicpiB024
CSPI01G23080Wild cucumber (PI 183967)cpicpiB019
CSPI01G23080Wild cucumber (PI 183967)cpicpiB043
CSPI01G23080Cucumber (Gy14) v1cgycpiB053
CSPI01G23080Cucumber (Gy14) v1cgycpiB153
CSPI01G23080Cucumber (Gy14) v1cgycpiB277
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23080Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23080Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23080Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23080Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23080Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23080Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23080Cucumber (Chinese Long) v2cpicuB001
CSPI01G23080Cucumber (Chinese Long) v2cpicuB028
CSPI01G23080Cucumber (Chinese Long) v2cpicuB032
CSPI01G23080Cucumber (Chinese Long) v2cpicuB047
CSPI01G23080Melon (DHL92) v3.5.1cpimeB003
CSPI01G23080Melon (DHL92) v3.5.1cpimeB008
CSPI01G23080Melon (DHL92) v3.5.1cpimeB025
CSPI01G23080Melon (DHL92) v3.5.1cpimeB065
CSPI01G23080Melon (DHL92) v3.5.1cpimeB084
CSPI01G23080Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23080Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23080Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23080Watermelon (97103) v1cpiwmB004
CSPI01G23080Watermelon (97103) v1cpiwmB069
CSPI01G23080Watermelon (97103) v1cpiwmB075
CSPI01G23080Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23080Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23080Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23080Cucurbita pepo (Zucchini)cpecpiB704