CSPI01G23040 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23040
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING finger protein 165
LocationChr1 : 18712838 .. 18713281 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCCCCGCCGTATATTGCCGCTTCTCCAATGCCAACGAACGGGTTCGAAGCCATTTTTGATGACTATGAGCTTTTGGCAGCCATATGTTTTGCCATTATAGTCTACTTCCTCTCCTTCACTTTCTACTTCAAAACCGGAAATAATGAATCAGAAGTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTCGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATCGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

mRNA sequence

ATGTCACCCCCGCCGTATATTGCCGCTTCTCCAATGCCAACGAACGGGTTCGAAGCCATTTTTGATGACTATGAGCTTTTGGCAGCCATATGTTTTGCCATTATAGTCTACTTCCTCTCCTTCACTTTCTACTTCAAAACCGGAAATAATGAATCAGAAGTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTCGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATCGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

Coding sequence (CDS)

ATGTCACCCCCGCCGTATATTGCCGCTTCTCCAATGCCAACGAACGGGTTCGAAGCCATTTTTGATGACTATGAGCTTTTGGCAGCCATATGTTTTGCCATTATAGTCTACTTCCTCTCCTTCACTTTCTACTTCAAAACCGGAAATAATGAATCAGAAGTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTCGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATCGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA
Homology
[Close]
BLAST of CSPI01G23040 vs. Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 89  ENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCVVVNP 148
           E+DD  EC +CL + EDG++ +++ +CGH FH  C+D WL +   CPLCR  V V   P
Sbjct: 127 EDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPP 185

[Close]
BLAST of CSPI01G23040 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 86  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCVVV 145
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 146 NP 148
            P
Sbjct: 185 EP 186

[Close]
BLAST of CSPI01G23040 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1 

Query: 28  AAICFAIIVYFLSFTFYFKTG--NNESEVDTGTVEDRLPVFREREI--VQIETMVFSYYR 87
           A   F+++++F   T Y        +S     +  DRL   R   +   +I ++     R
Sbjct: 36  ALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCR 95

Query: 88  EAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCV 144
             + +E +++ EC ICL  FE+G+K + +  C H +H  C+DRWL+TE  CPLCR  + V
Sbjct: 96  RER-AEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRV 154

[Close]
BLAST of CSPI01G23040 vs. Swiss-Prot
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-11
Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 1 

Query: 9   ASPMPTN---GFEAIFDDYELLAAICFAIIVYFLSFTFYFK--TGNNESEVD-TGTVEDR 68
           + P PTN    +  +     ++  I  A + +   F+ YF+  +G  ++ V   G    R
Sbjct: 31  SQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSR 90

Query: 69  LPV---FREREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHI 128
             V    R  ++  +ET     Y + K  +    + EC ICLN+FED +  + + KC H+
Sbjct: 91  ATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHV 150

Query: 129 FHRSCIDRWLRTERECPLCRS 140
           FH  CID WL     CP+CR+
Sbjct: 151 FHPHCIDAWLEAHVTCPVCRA 171

[Close]
BLAST of CSPI01G23040 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.8e-11
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 75  ETMVFSY--YREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTER 134
           E+M+ S   Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 135 ECPLCRSCVCVVVNP 148
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]
BLAST of CSPI01G23040 vs. TrEMBL
Match: A0A0A0LXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.5e-81
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 1 

Query: 1   MSPPPYIAASPMPTNGFEAIFDDYELLAAICFAIIVYFLSFTFYFKTGNNESEVDTGTVE 60
           MSPPPYIAASPMPTNGFEAIFDD+ELLAAICFAIIVYFLSFTFYFKTGNNESE DTGTVE
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFELLAAICFAIIVYFLSFTFYFKTGNNESEFDTGTVE 60

Query: 61  DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH 120
           DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH
Sbjct: 61  DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH 120

Query: 121 RSCIDRWLRTERECPLCRSCVCVVVNP 148
            SCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 121 CSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CSPI01G23040 vs. TrEMBL
Match: A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 7   IAASPMPTNGFEAIFDDY--ELLAAICFAIIVYFLSFTFYFKTGNNESEVDTGTVEDRLP 66
           ++ SP+P+     +   Y  +LL A  F  IV  L  +   +  + +S+V+        P
Sbjct: 3   LSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVE------EFP 62

Query: 67  VFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCI 126
                E V IE  +F Y     G +   + +C ICL + E+G+KC+ MK CGH+FH+ CI
Sbjct: 63  -----ENVDIEAPIFHY-----GGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCI 122

Query: 127 DRWLRTERECPLCRSCVCVVV 146
            RW + +  CP+CR+ VCVVV
Sbjct: 123 GRWFKVDGHCPICRTSVCVVV 127

[Close]
BLAST of CSPI01G23040 vs. TrEMBL
Match: A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 70  EIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLR 129
           E + IE  +F Y     G E D+  EC ICL + E+G+KC+ MK CGH+FH+ CIDRW +
Sbjct: 67  ENLDIEAPIFHY----NGVEGDEQ-ECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK 126

Query: 130 TERECPLCRSCVCVVV 146
            +  CP+CR+ VCVVV
Sbjct: 127 VDGHCPICRTSVCVVV 137

[Close]
BLAST of CSPI01G23040 vs. TrEMBL
Match: A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 72  VQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTE 131
           + IE  +F +Y   +G E     ECVICL + E+G+KC+ MK CGH+FH+ CIDRW +  
Sbjct: 38  LDIEAPIF-HYSGVEGGEQ----ECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 97

Query: 132 RECPLCRSCVCVVV 146
             CP+CR+ VC+VV
Sbjct: 98  GHCPICRTSVCMVV 106

[Close]
BLAST of CSPI01G23040 vs. TrEMBL
Match: A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 72  VQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTE 131
           V +E +VF Y  +  G +     E  ICL + E+G+KC+ MK CGH+FH+ CIDRW + +
Sbjct: 34  VDLEALVFHYNGDEGGEQ-----EYAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVD 93

Query: 132 RECPLCRSCVCVVV 146
             CP+CR+ VCVVV
Sbjct: 94  DHCPICRTSVCVVV 102

[Close]
BLAST of CSPI01G23040 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 86  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCVVV 145
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 146 NP 148
            P
Sbjct: 185 EP 186

[Close]
BLAST of CSPI01G23040 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-12
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1 

Query: 28  AAICFAIIVYFLSFTFYFKTG--NNESEVDTGTVEDRLPVFREREI--VQIETMVFSYYR 87
           A   F+++++F   T Y        +S     +  DRL   R   +   +I ++     R
Sbjct: 36  ALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCR 95

Query: 88  EAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCV 144
             + +E +++ EC ICL  FE+G+K + +  C H +H  C+DRWL+TE  CPLCR  + V
Sbjct: 96  RER-AEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRV 154

[Close]
BLAST of CSPI01G23040 vs. TAIR10
Match: AT3G05200.1 (AT3G05200.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-12
Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 1 

Query: 9   ASPMPTN---GFEAIFDDYELLAAICFAIIVYFLSFTFYFK--TGNNESEVD-TGTVEDR 68
           + P PTN    +  +     ++  I  A + +   F+ YF+  +G  ++ V   G    R
Sbjct: 31  SQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSR 90

Query: 69  LPV---FREREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHI 128
             V    R  ++  +ET     Y + K  +    + EC ICLN+FED +  + + KC H+
Sbjct: 91  ATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHV 150

Query: 129 FHRSCIDRWLRTERECPLCRS 140
           FH  CID WL     CP+CR+
Sbjct: 151 FHPHCIDAWLEAHVTCPVCRA 171

[Close]
BLAST of CSPI01G23040 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-12
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 75  ETMVFSY--YREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTER 134
           E+M+ S   Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 135 ECPLCRSCVCVVVNP 148
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]
BLAST of CSPI01G23040 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-12
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 82  YREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWL-RTERECPLCRS 140
           + E   S  D    C +CL +FE  Q+ +W++ C HIFHRSC+DRW+   ++ CPLCR+
Sbjct: 80  FEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCPLCRT 138

[Close]
BLAST of CSPI01G23040 vs. NCBI nr
Match: gi|449466637|ref|XP_004151032.1| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 3.6e-81
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 1 

Query: 1   MSPPPYIAASPMPTNGFEAIFDDYELLAAICFAIIVYFLSFTFYFKTGNNESEVDTGTVE 60
           MSPPPYIAASPMPTNGFEAIFDD+ELLAAICFAIIVYFLSFTFYFKTGNNESE DTGTVE
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFELLAAICFAIIVYFLSFTFYFKTGNNESEFDTGTVE 60

Query: 61  DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH 120
           DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH
Sbjct: 61  DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFH 120

Query: 121 RSCIDRWLRTERECPLCRSCVCVVVNP 148
            SCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 121 CSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CSPI01G23040 vs. NCBI nr
Match: gi|659115464|ref|XP_008457571.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 9.3e-61
Identity = 121/160 (75.62%), Postives = 132/160 (82.50%), Query Frame = 1 

Query: 1   MSPPPYIAASPMPTNGFEAIFDDYELLAAICFAIIVYFLSFTFYFKTGNNE---SEVDTG 60
           MS P YIAASPMP NG EA+FDDY+++AAICFAIIVYF+SFT YFKTGNN+    + D G
Sbjct: 1   MSSPAYIAASPMPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDVG 60

Query: 61  TVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN----DDDYECVICLNKFEDGQ 120
           TVE+ LP FRER      EIVQIE MVFS YREAK SEN    DDDYECVICLNKFED Q
Sbjct: 61  TVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDDDYECVICLNKFEDAQ 120

Query: 121 KCQWMKKCGHIFHRSCIDRWLRTERECPLCRSCVCVVVNP 148
           KC+WMKKCGHIFHRSCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 121 KCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]
BLAST of CSPI01G23040 vs. NCBI nr
Match: gi|659115460|ref|XP_008457568.1| (PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 72  VQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLRTE 131
           + I+  VF Y     G + DD+ EC ICL + E+G+KC+ MK CGH+FH+ CIDRW   E
Sbjct: 31  LDIQASVFHY-----GVDGDDEQECAICLCEIEEGEKCRKMKMCGHVFHKDCIDRWFTVE 90

Query: 132 RECPLCRSCVCVVVN 147
             CPLCR+ VCVVV+
Sbjct: 91  LHCPLCRTSVCVVVD 100

[Close]
BLAST of CSPI01G23040 vs. NCBI nr
Match: gi|778665205|ref|XP_011648513.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 7   IAASPMPTNGFEAIFDDY--ELLAAICFAIIVYFLSFTFYFKTGNNESEVDTGTVEDRLP 66
           ++ SP+P+     +   Y  +LL A  F  IV  L  +   +  + +S+V+        P
Sbjct: 3   LSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVE------EFP 62

Query: 67  VFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCI 126
                E V IE  +F Y     G +   + +C ICL + E+G+KC+ MK CGH+FH+ CI
Sbjct: 63  -----ENVDIEAPIFHY-----GGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCI 122

Query: 127 DRWLRTERECPLCRSCVCVVV 146
            RW + +  CP+CR+ VCVVV
Sbjct: 123 GRWFKVDGHCPICRTSVCVVV 127

[Close]
BLAST of CSPI01G23040 vs. NCBI nr
Match: gi|778730799|ref|XP_011659858.1| (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 70  EIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHRSCIDRWLR 129
           E + IE  +F +Y E +G E     EC ICL + E+G+KC+ MK CGH+FH+ CIDRW +
Sbjct: 57  ENLDIEAPIF-HYNEVEGGEQ----ECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK 116

Query: 130 TERECPLCRSCVCVVV 146
               CP+CR+ VCVVV
Sbjct: 117 VNGHCPICRTSVCVVV 127

The following BLAST results are available for this feature:
BLAST of CSPI01G23040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EL5_ORYSJ1.8e-1145.76E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV... [more]
ATL55_ARATH2.3e-1143.55E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL66_ARATH4.0e-1131.67RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
ATL6_ARATH5.2e-1129.79E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2[more]
ATL52_ARATH8.8e-1140.00RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
BLAST of CSPI01G23040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXE1_CUCSA2.5e-8197.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1[more]
A0A0A0LY10_CUCSA7.0e-1534.75Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1[more]
A0A0A0K790_CUCSA1.2e-1450.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1[more]
A0A0A0LUU6_CUCSA5.9e-1448.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1[more]
A0A0A0LY13_CUCSA1.0e-1347.30Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1[more]
BLAST of CSPI01G23040 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10380.11.3e-1243.55 RING/U-box superfamily protein[more]
AT3G11110.12.2e-1231.67 RING/U-box superfamily protein[more]
AT3G05200.12.9e-1229.79 RING/U-box superfamily protein[more]
AT5G17600.15.0e-1240.00 RING/U-box superfamily protein[more]
AT3G61460.15.0e-1244.07 brassinosteroid-responsive RING-H2[more]
BLAST of CSPI01G23040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466637|ref|XP_004151032.1|3.6e-8197.96PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|659115464|ref|XP_008457571.1|9.3e-6175.63PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo][more]
gi|659115460|ref|XP_008457568.1|3.1e-1652.00PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo][more]
gi|778665205|ref|XP_011648513.1|1.0e-1434.75PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|778730799|ref|XP_011659858.1|1.0e-1450.00PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23040.1CSPI01G23040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 95..138
score: 2.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 96..137
score: 8.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 96..138
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 91..139
score: 4.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 74..141
score: 4.2
NoneNo IPR availablePANTHERPTHR14155:SF110RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 74..141
score: 4.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 89..144
score: 1.06

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23040Lsi02G013580Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23040CmoCh06G003080Cucurbita moschata (Rifu)cmocpiB811
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23040Cucumber (Chinese Long) v3cpicucB032
CSPI01G23040Cucumber (Chinese Long) v3cpicucB000
CSPI01G23040Cucumber (Chinese Long) v3cpicucB037
CSPI01G23040Cucumber (Chinese Long) v3cpicucB055
CSPI01G23040Watermelon (97103) v2cpiwmbB015
CSPI01G23040Watermelon (97103) v2cpiwmbB027
CSPI01G23040Watermelon (97103) v2cpiwmbB044
CSPI01G23040Watermelon (97103) v2cpiwmbB058
CSPI01G23040Wax gourdcpiwgoB018
CSPI01G23040Wax gourdcpiwgoB048
CSPI01G23040Wild cucumber (PI 183967)cpicpiB024
CSPI01G23040Wild cucumber (PI 183967)cpicpiB019
CSPI01G23040Wild cucumber (PI 183967)cpicpiB043
CSPI01G23040Cucumber (Gy14) v1cgycpiB053
CSPI01G23040Cucumber (Gy14) v1cgycpiB153
CSPI01G23040Cucumber (Gy14) v1cgycpiB277
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23040Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23040Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23040Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23040Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23040Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23040Cucumber (Chinese Long) v2cpicuB001
CSPI01G23040Cucumber (Chinese Long) v2cpicuB028
CSPI01G23040Cucumber (Chinese Long) v2cpicuB032
CSPI01G23040Cucumber (Chinese Long) v2cpicuB047
CSPI01G23040Melon (DHL92) v3.5.1cpimeB003
CSPI01G23040Melon (DHL92) v3.5.1cpimeB008
CSPI01G23040Melon (DHL92) v3.5.1cpimeB025
CSPI01G23040Melon (DHL92) v3.5.1cpimeB065
CSPI01G23040Melon (DHL92) v3.5.1cpimeB084
CSPI01G23040Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23040Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23040Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23040Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23040Watermelon (97103) v1cpiwmB004
CSPI01G23040Watermelon (97103) v1cpiwmB023
CSPI01G23040Watermelon (97103) v1cpiwmB069
CSPI01G23040Watermelon (97103) v1cpiwmB075
CSPI01G23040Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23040Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23040Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23040Cucurbita pepo (Zucchini)cpecpiB704
CSPI01G23040Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23040Melon (DHL92) v3.6.1cpimedB007
CSPI01G23040Melon (DHL92) v3.6.1cpimedB024
CSPI01G23040Melon (DHL92) v3.6.1cpimedB057
CSPI01G23040Cucumber (Gy14) v2cgybcpiB002
CSPI01G23040Cucumber (Gy14) v2cgybcpiB097
CSPI01G23040Cucumber (Gy14) v2cgybcpiB159
CSPI01G23040Cucumber (Gy14) v2cgybcpiB252
CSPI01G23040Silver-seed gourdcarcpiB0177
CSPI01G23040Silver-seed gourdcarcpiB0336
CSPI01G23040Silver-seed gourdcarcpiB0363
CSPI01G23040Silver-seed gourdcarcpiB0415
CSPI01G23040Silver-seed gourdcarcpiB0476
CSPI01G23040Silver-seed gourdcarcpiB1034