CSPI01G20740 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G20740
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Glutaredoxin family protein
Location	Chr1 : 16364559 .. 16367484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTATAATTGAAAAGAAAAAAAGGTCAACAGTTAGGTTGACTGAATTCCAAATTTAATCGCCGACGGGAGCAGCCTTATCGAGAAAACCTTATTGCGGCCCGGAAATTTCATTGTATCAATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATCTTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGTCAATTGTTTTAATATTGTTGTGTGTGTCTAAGATTGGAAGCAAATTCAGGGTTCATTAATGAATCAAGGATTATTTTCTGTTTCTTTTAAAGTTCAATTGGAATCGTTGAAATTCCTGGTGTTAATTATTTCTAGTTCTAAAATGCAGGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGGTATTTACTTAATTTCCTTTCTTCTTGTTTTCTCTCTGATTATGAAAAGTAACAGTTACAAGTCTCTTTATTAACTGTTGAATTTGGGTTGCATCTGTTGAAACTGAGTATACATGAGAATCTTGTTCTAGCTTAGTAACTTCAAGTTATGAAAATGTTGGAGTGTACATTTGAGATTTTTGAAGCTCAAGTGTGTGTTAACTAAATGGATTGCCTTTACTATTTTGTTATCTCTTTGCTTCATCTGCTTCTCTTCTTCTTCCATTTCTGTTGTTTTCTGATTCAGTTTCATTATTCAAAGACACTATCTAGGTAAATGATTGAGACAAACTTAAGTGAAGCTTAGAAATAAGAACAGCAAAAACTGTAAGAGAGTAAGAGAAACTGCCTTAGTTTTAGTGCTGCTTTCAACCTCTCACAATGAGGATTACCTGCAGCTGCAATATTTATGTATCAAGTCCTGTGATGTGATCCTTTGTTATATGCTTTGCCAATTCGAAGCTAAACGTTTTGTTTAGGAACATTTTTTCTACTCTCTTTGGCTAATTTTCTCTTTTCAATGTGCAACTCTCAACATGCTCTTCAAAGATGGGGTCTTTTTGGTTTCACCATTCTTGGGTTTTCTTTGTTTGGATTGAATATTTGATTGAGATTCATGGTCTTGGTTTATGATACTATATTAAATTATATAGGATTTCATCTCAAAACCAATTGACAATAAGAGAAGTAATTGTTGTGTCTTATTAAGACCATATAGTCATTTCATCTTTCTAATATGAGATCCTCAAAAAGGAAAGGGGCCAAAAAGTCGCTGATGATAGAGGAAAAGTATGACCGATTAATGTGGCTTGGTTTTGATGCAAATATTGGCAAGAAAGAATCACCAAACTTGCACATGTGGACAAGTTTTTGATTCAGAAACGAGGTGAACTGCAAAATATAATGAACCGCCCCTGATGTCCAAGTTAGTTTAGAGGATTCAGAATGTAGTAAGAGTTAACTTACCCCTTCATTATATAACTGGGATGACCTAGAGTTTTTCCTCTCCTCCTCAGATTAAGATGATCTAGATCTGCCTCTTCTCGCCGGGTCAATCCTGTGGAGTGTGGATAAAAAATTCCACATATCCTTCGGCCAACAACCTTGGCCTGATTGGCCCTGGTTGACTCTCTTTAGCCTTTATAGGCCTTGGGTTTGGTTTTGTCCATTATGAGTCCAACTCGTGTTGACTTTGCTTTGAGCACAAATTCAACCGTAACTCTTGAATTATTTTGTTAGTGAGAAATTATCAAAATCTTATTTTATCTTTTGGTAGTTCGTACAGGTTCTTTGTCTTCTTTACTTTAGTTCTCTTCTCTTTCATTTCATTTCAGGATGGGGATAGAATTGAAGCATTGGTATCAATTCCCTAAATGGTCTGGCAAAACTGTTACCATTAGACTAGACACATATATATATCATAACTCTTGTTTCCATGTCTTTCTATATCCTACTGTTCTCTCCATGCTTTTCTATGACTCATAACTTAAAAGTTAGTTTAGTTAACTCCTAGAATTTGGATCTTTATCCCGTAGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGGTAATTGGCTCTTCCTTGGCAACTTATTGTTTGTAATATATTCTTCTCCAAAGTACTTTCTAACTCATTGAGACCTTGATTTTCAGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAGGATAAAGTGATTCATCTCTTCAATTCTAAGCAGATATCTTTGCACATACAGATTGTATTTTTGCTTGAATCAACTGCTTATTAATTATATGGGATAAATTGACCACTACATGATATTATTTTGTCTTCAAAATAGTTGTCCGTTGTTGGTCTGTTGGGTGCGGATTAACAAATCTACATCCTTTTAGGAATTATTGAATATAATTTTAAAGTATTTTTGCAGTTTCTTCGCATATAAACTATTATCTACGTTGTGACAACATCTACTTGTAATTTCTCACTGTAGTTAAAGCTCCAATCCAACTTTAGGGTCAAACCATCCTGTACTGTTTGGGTCAAACTCACATTTATTAAGGAGCAGAAATGGGACTCTGTTTGGTTGATAGC

mRNA sequence

ATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAG

Coding sequence (CDS)

ATGGCAGCCACGGTGGTGACGATGAGGATGAGGATGATACCGACGGTACGCGCCATGGCTTCATCTTCGCCTGAATCACTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAATCCTATTGCCCGTATTGTGAAACGGCAAAAACTGTTTTCAAGGATTTGAACAAAGTTCCTCATGTTGTTGAGTTGGATCAAAGGGATGATGGGAGTGCCATTCAAGATGCTTTAAGTGCACTTGTCGGAAGGCACACTGTACCTCAAGTGTTTATAGATGGAAAACACATAGGTGGATCAGATGATACCGTTGAAGCATATGAGAGCGGAGAATTGGGTAAACTCCTGGGTATTGAGGAATAG

Homology

[Close]

BLAST of CSPI01G20740 vs. Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 74/102 (72.55%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           A+SSPE+ FVKKTI+SH+ VIFSKSYCPYC+ AK+VF++L++VP+VVELD+R+DG +IQ 
Sbjct: 26  AASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQT 85

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           AL  +VGR TVPQVFI+GKH+GGSDDTV+AYESGEL KLLG+
Sbjct: 86  ALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGV 127

[Close]

BLAST of CSPI01G20740 vs. Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-34
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 18  AMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN--KVPHVVELDQRDDGS 77
           A + ++ +S FVK T+ +H  VIFSKSYCPYC  AK VFK+L   K P+VVELDQR+DG 
Sbjct: 25  AASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGW 84

Query: 78  AIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGIE 123
            IQDALS +VGR TVPQVF+ GKH+GGSDDTVEAYESG+L KLL I+
Sbjct: 85  EIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNID 131

[Close]

BLAST of CSPI01G20740 vs. Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-27
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 18  AMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAI 77
           A A+ SP S FV+  I S++  IFSK+YCPY   AK +F+DL + P++VELD R+DG  I
Sbjct: 24  AAATRSP-SAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREI 83

Query: 78  QDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 121
           Q  L  LVGRHTVPQVF++G+H+GGSDDT  A+ +G+L KLLG
Sbjct: 84  QSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLG 125

[Close]

BLAST of CSPI01G20740 vs. Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.1e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 26  SLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALV 85
           S FV+  I S++ VIFSKSYCPYC  +K +F  L + P VVELDQR+DG  IQ  L   V
Sbjct: 34  SAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFV 93

Query: 86  GRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           GR TVPQVF++GKHIGGSDD   A ESG+L KLL
Sbjct: 94  GRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127

[Close]

BLAST of CSPI01G20740 vs. Swiss-Prot
Match: GLRX1_RHIID (Glutaredoxin-1 OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) GN=GRX1 PE=2 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-19
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 29  VKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRH 88
           V+K I ++  ++FSKS+CPYC+ AK   K+LN  P + ELD+  +G AIQD L     ++
Sbjct: 8   VEKLIQTNPVMMFSKSFCPYCKKAKATLKELNVEPGICELDEDSEGRAIQDYLKEKTSQN 67

Query: 89  TVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           TVP +FI G+H+GG DD + A ++G L K++
Sbjct: 68  TVPNIFIKGQHVGGCDDLLAAKDNGSLSKMI 98

[Close]

BLAST of CSPI01G20740 vs. TrEMBL
Match: A0A0A0LUU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427530 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.2e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

[Close]

BLAST of CSPI01G20740 vs. TrEMBL
Match: A0A0A0LXH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427520 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-40
Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAM------------ASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K TIASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+L+KVPHVVELDQRDDGS++Q+ALS L GR TVPQVFIDGKHIGGSDDT+E
Sbjct: 61  CRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELRKLLGIKE 131

[Close]

BLAST of CSPI01G20740 vs. TrEMBL
Match: Q8S3L1_9ROSI (Glutaredoxin OS=Populus tremula x Populus tremuloides PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-39
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 3   ATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKV 62
           AT VT+ +  +      A+ SPE+ FVKKTI+SHQ VIFSKSYCPYC+ AK VFK+LN+ 
Sbjct: 12  ATAVTLTV--LAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQT 71

Query: 63  PHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           PHVVELDQR+DG  IQDA+S +VGR TVPQVFIDGKHIGGSDDTVEAYESGEL KLLG+
Sbjct: 72  PHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGV 128

[Close]

BLAST of CSPI01G20740 vs. TrEMBL
Match: A9PBC3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13330g PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-39
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 3   ATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKV 62
           AT VT+ +  +      A+ SPE+ FVKKTI+SHQ VIFSKSYCPYC+ AK VFK+LN+ 
Sbjct: 12  ATAVTLTV--LAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQT 71

Query: 63  PHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           PHVVELDQR+DG  IQDA+S +VGR TVPQVFIDGKHIGGSDDTVEAYESGEL KLLG+
Sbjct: 72  PHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGV 128

[Close]

BLAST of CSPI01G20740 vs. TrEMBL
Match: A0A067LHK5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24047 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           A+ + ES FVKKTI+SH+ VIFSKSYCPYC+ AK VFK+LNKVPHVVELD+RDDG  IQD
Sbjct: 26  ANDTTESAFVKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQD 85

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           ALS +VGR TVPQVFIDGKHIGGSDDTVEAY SGEL KLLGI
Sbjct: 86  ALSKVVGRRTVPQVFIDGKHIGGSDDTVEAYTSGELAKLLGI 127

[Close]

BLAST of CSPI01G20740 vs. TAIR10
Match: AT5G20500.1 (AT5G20500.1 Glutaredoxin family protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-39
Identity = 74/102 (72.55%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 20  ASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQD 79
           A+SSPE+ FVKKTI+SH+ VIFSKSYCPYC+ AK+VF++L++VP+VVELD+R+DG +IQ 
Sbjct: 26  AASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQT 85

Query: 80  ALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           AL  +VGR TVPQVFI+GKH+GGSDDTV+AYESGEL KLLG+
Sbjct: 86  ALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGV 127

[Close]

BLAST of CSPI01G20740 vs. TAIR10
Match: AT1G77370.1 (AT1G77370.1 Glutaredoxin family protein)

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-27
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 26  SLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALV 85
           S FV+  I S++ VIFSKSYCPYC  +K +F  L + P VVELDQR+DG  IQ  L   V
Sbjct: 34  SAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFV 93

Query: 86  GRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           GR TVPQVF++GKHIGGSDD   A ESG+L KLL
Sbjct: 94  GRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127

[Close]

BLAST of CSPI01G20740 vs. TAIR10
Match: AT4G28730.1 (AT4G28730.1 Glutaredoxin family protein)

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-19
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 15  TVRAM-----ASSSPESLF-------VKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKV 74
           +VRAM     A+SS  S F       ++KT+  +  VI+SK++C YC   KT+FK L   
Sbjct: 47  SVRAMTSSSSAASSSSSSFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQ 106

Query: 75  PHVVELDQRD-DGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           P VVELDQ    G  +Q  L  L G+HTVP VF+ GKHIGG  DTV+    G+L  +L
Sbjct: 107 PLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 164

[Close]

BLAST of CSPI01G20740 vs. TAIR10
Match: AT5G63030.1 (AT5G63030.1 Thioredoxin superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-17
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 30  KKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHT 89
           K+ ++++  V+FSK+YC YC+  K +   L     V+ELD+  DG  IQ ALS   G+ T
Sbjct: 23  KEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTT 82

Query: 90  VPQVFIDGKHIGGSDDTVEAYESGELGKLL 120
           VP VFI G HIGG D  +E  + G+L  LL
Sbjct: 83  VPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112

[Close]

BLAST of CSPI01G20740 vs. TAIR10
Match: AT2G20270.2 (AT2G20270.2 Thioredoxin superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 9.6e-17
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 15  TVRAMASSSPES-----LFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKVPHVVELD 74
           +V+AM+SSS  S       VK T+A +  V++SK++C Y    K++FK L   P VVELD
Sbjct: 59  SVKAMSSSSSSSGSTLEETVKTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELD 118

Query: 75  QR----------------------------DDGSAIQDALSALVGRHTVPQVFIDGKHIG 120
           Q                              +GS +Q+ L  + G++TVP VFI GKHIG
Sbjct: 119 QLVSLGKTSLPHDIGLKHLQKFWWFLAFPGSEGSQLQNVLEKITGQYTVPNVFIGGKHIG 178

[Close]

BLAST of CSPI01G20740 vs. NCBI nr
Match: gi|449457217|ref|XP_004146345.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 6.0e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

[Close]

BLAST of CSPI01G20740 vs. NCBI nr
Match: gi|659107142|ref|XP_008453541.1| (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 3.3e-59
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLN 60
           MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAK VFKDLN
Sbjct: 1   MAATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKAVFKDLN 60

Query: 61  KVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLG 120
           KVPHVVELDQRDDGSAIQDALSALVGRH+VPQVFIDGKHIGGSDDTVEAYESGEL KLLG
Sbjct: 61  KVPHVVELDQRDDGSAIQDALSALVGRHSVPQVFIDGKHIGGSDDTVEAYESGELSKLLG 120

Query: 121 IEE 124
           IEE
Sbjct: 121 IEE 123

[Close]

BLAST of CSPI01G20740 vs. NCBI nr
Match: gi|659107140|ref|XP_008453540.1| (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 8.9e-41
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAM------------ASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K  IASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+LNKVPHVVELDQRDDGSA+Q+ALS L GR TVPQVFIDGKHIGGSDDTVE
Sbjct: 61  CRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELSKLLGIKE 131

[Close]

BLAST of CSPI01G20740 vs. NCBI nr
Match: gi|449457215|ref|XP_004146344.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 7.6e-40
Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MAATVVTMRMRMIPTVRAM------------ASSSPESLFVKKTIASHQTVIFSKSYCPY 60
           MAATV    MR I T  A             ASSSPES F+K TIASHQ VIFSKSYCPY
Sbjct: 1   MAATV---SMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPY 60

Query: 61  CETAKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVE 120
           C  AK VFK+L+KVPHVVELDQRDDGS++Q+ALS L GR TVPQVFIDGKHIGGSDDT+E
Sbjct: 61  CRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLE 120

Query: 121 AYESGELGKLLGIEE 124
           AYESGEL KLLGI+E
Sbjct: 121 AYESGELRKLLGIKE 131

[Close]

BLAST of CSPI01G20740 vs. NCBI nr
Match: gi|224144252|ref|XP_002325236.1| (hypothetical protein POPTR_0018s13330g [Populus trichocarpa])

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 3   ATVVTMRMRMIPTVRAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKTVFKDLNKV 62
           AT VT+ +  +      A+ SPE+ FVKKTI+SHQ VIFSKSYCPYC+ AK VFK+LN+ 
Sbjct: 12  ATAVTLTV--LAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQT 71

Query: 63  PHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGI 122
           PHVVELDQR+DG  IQDA+S +VGR TVPQVFIDGKHIGGSDDTVEAYESGEL KLLG+
Sbjct: 72  PHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGV 128

The following BLAST results are available for this feature:

BLAST of CSPI01G20740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRXC4_ARATH	1.9e-38	72.55	Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2	[more]
GRXC8_ORYSJ	3.6e-34	66.36	Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2	[more]
GRXS6_ORYSJ	4.3e-27	57.28	Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1	[more]
GRXC3_ARATH	8.1e-26	61.70	Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1	[more]
GLRX1_RHIID	4.3e-19	45.05	Glutaredoxin-1 OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MU...	[more]

BLAST of CSPI01G20740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUU4_CUCSA	4.2e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427530 PE=4 SV=1	[more]
A0A0A0LXH3_CUCSA	5.3e-40	71.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427520 PE=4 SV=1	[more]
Q8S3L1_9ROSI	1.2e-39	71.43	Glutaredoxin OS=Populus tremula x Populus tremuloides PE=2 SV=1	[more]
A9PBC3_POPTR	1.2e-39	71.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13330g PE=2 SV=1	[more]
A0A067LHK5_JATCU	1.5e-39	80.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24047 PE=4 SV=1	[more]

BLAST of CSPI01G20740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20500.1	1.1e-39	72.55	Glutaredoxin family protein	[more]
AT1G77370.1	4.6e-27	61.70	Glutaredoxin family protein	[more]
AT4G28730.1	6.0e-19	44.92	Glutaredoxin family protein	[more]
AT5G63030.1	4.3e-17	44.44	Thioredoxin superfamily protein	[more]
AT2G20270.2	9.6e-17	36.23	Thioredoxin superfamily protein	[more]

BLAST of CSPI01G20740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457217\|ref\|XP_004146345.1\|	6.0e-61	100.00	PREDICTED: glutaredoxin-C4-like [Cucumis sativus]	[more]
gi\|659107142\|ref\|XP_008453541.1\|	3.3e-59	97.56	PREDICTED: glutaredoxin-C4-like [Cucumis melo]	[more]
gi\|659107140\|ref\|XP_008453540.1\|	8.9e-41	72.59	PREDICTED: glutaredoxin-C4-like [Cucumis melo]	[more]
gi\|449457215\|ref\|XP_004146344.1\|	7.6e-40	71.11	PREDICTED: glutaredoxin-C4-like [Cucumis sativus]	[more]
gi\|224144252\|ref\|XP_002325236.1\|	1.7e-39	71.43	hypothetical protein POPTR_0018s13330g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002109	Glutaredoxin
IPR011767	GLR_AS
IPR011899	Glutaredoxin_euk/vir
IPR012336	Thioredoxin-like_fold
IPR014025	Glutaredoxin_subgr

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G20740.1	CSPI01G20740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 39..100 score: 2.3
IPR002109	Glutaredoxin	PROFILE	PS51354	GLUTAREDOXIN_2	coord: 26..123 score: 22
IPR011767	Glutaredoxin active site	PROSITE	PS00195	GLUTAREDOXIN_1	coord: 40..55 scor
IPR011899	Glutaredoxin, eukaryotic/virial	TIGRFAMs	TIGR02180	TIGR02180	coord: 39..118 score: 1.3
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 25..119 score: 2.7
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 29..119 score: 2.28
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 38..56 score: 1.3E-14coord: 97..110 score: 1.3E-14coord: 83..96 score: 1.3
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 5..119 score: 9.1
None	No IPR available	PANTHER	PTHR10168:SF112	GLUTAREDOXIN-C4	coord: 5..119 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G20740	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G20740	Watermelon (97103) v2	cpiwmbB069
CSPI01G20740	Wax gourd	cpiwgoB105
CSPI01G20740	Cucumber (Gy14) v1	cgycpiB424
CSPI01G20740	Cucurbita maxima (Rimu)	cmacpiB060
CSPI01G20740	Cucurbita maxima (Rimu)	cmacpiB099
CSPI01G20740	Cucurbita moschata (Rifu)	cmocpiB052
CSPI01G20740	Cucurbita moschata (Rifu)	cmocpiB091
CSPI01G20740	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G20740	Melon (DHL92) v3.5.1	cpimeB043
CSPI01G20740	Watermelon (Charleston Gray)	cpiwcgB072
CSPI01G20740	Watermelon (97103) v1	cpiwmB087
CSPI01G20740	Cucurbita pepo (Zucchini)	cpecpiB352
CSPI01G20740	Cucurbita pepo (Zucchini)	cpecpiB641
CSPI01G20740	Bottle gourd (USVL1VR-Ls)	cpilsiB060
CSPI01G20740	Melon (DHL92) v3.6.1	cpimedB037
CSPI01G20740	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G20740	Silver-seed gourd	carcpiB0625
CSPI01G20740	Silver-seed gourd	carcpiB0822