CSPI01G19320 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G19320
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 14783724 .. 14784557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGGCATTTACTGATGACCATTTAAGGACAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAACTTTTAAACAGTTTCATGCCGTTGTTGAAAAAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATAATGGCATTCAACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGAATAGCTGAAAGATTGAACAGAACATTGGTTGAGAGAGTGAGATGCTTATTATCTGAATCATAGTTGCCACAGTCATTTTGGGGTGAAGCTTTAAATACAATTGTACATGTTTTGAATCTCACACCATGTGTTCCTTTGGGATCAAAAGTTCCAAACAGAATATGGTTAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTATCTAAAGATGAGAGACCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATAGTCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAAACATTGAGAAAATAGGTGAACAAGAGTCTAAGCATAGTGATAATCTGATTGAATTGAGTTCAACCTCTTTGACACAGCTTTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTTTGATACAGATGAGAGTTCTGAGCATGTTGGGACAGAGGATAATGTTCAAGAATAG

mRNA sequence

ATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGGCATTTACTGATGACCATTTAAGGACAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAACTTTTAAACAGTTTCATGCCGTTGTTGAAAAAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATAATGGCATTCAACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGAATAGCTGAAAGATTGAACAGAACATTGTTGCCACAGTCATTTTGGGGTGAAGCTTTAAATACAATTGTACATGTTTTGAATCTCACACCATGTGTTCCTTTGGGATCAAAAGTTCCAAACAGAATATGGTTAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTATCTAAAGATGAGAGACCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATAGTCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAAACATTGAGAAAATAGGTGAACAAGAGTCTAAGCATAGTGATAATCTGATTGAATTGAGTTCAACCTCTTTGACACAGCTTTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTTTGATACAGATGAGAGTTCTGAGCATGTTGGGACAGAGGATAATGTTCAAGAATAG

Coding sequence (CDS)

ATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGGCATTTACTGATGACCATTTAAGGACAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAACTTTTAAACAGTTTCATGCCGTTGTTGAAAAAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATAATGGCATTCAACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGAATAGCTGAAAGATTGAACAGAACATTGTTGCCACAGTCATTTTGGGGTGAAGCTTTAAATACAATTGTACATGTTTTGAATCTCACACCATGTGTTCCTTTGGGATCAAAAGTTCCAAACAGAATATGGTTAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTATCTAAAGATGAGAGACCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATAGTCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAAACATTGAGAAAATAGGTGAACAAGAGTCTAAGCATAGTGATAATCTGATTGAATTGAGTTCAACCTCTTTGACACAGCTTTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTTTGATACAGATGAGAGTTCTGAGCATGTTGGGACAGAGGATAATGTTCAAGAATAG
Homology
[Close]
BLAST of CSPI01G19320 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-71
Identity = 138/281 (49.11%), Postives = 190/281 (67.62%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           M+ +S+GG  YFV F DD  R +WVY LKTKDQV Q F++FHA+VE+ETG KLK +R+DN
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GGEYCG-PFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWG 120
           GGEY    F+EYC ++GI+H+KT P TPQ NG+AER+NRT+            LP+SFWG
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

Query: 121 EALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKT 180
           EA+ T  +++N +P VPL  ++P R+W  K++SYSHL+VFGC+AF HV K++R KLD K+
Sbjct: 612 EAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKS 671

Query: 181 KACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELS 240
             C+F+GY  +EFGYRL+DP KKK+IRSRDVVF E +     +   + ++    N + + 
Sbjct: 672 IPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIP 731

Query: 241 STSLTQLSTQ-IEDEV--QNEQFFDTDESSEHVGTEDNVQE 266
           STS    S +   DEV  Q EQ  +  E  E +  ++ V+E
Sbjct: 732 STSNNPTSAESTTDEVSEQGEQPGEVIEQGEQL--DEGVEE 770

[Close]
BLAST of CSPI01G19320 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-28
Identity = 88/268 (32.84%), Postives = 130/268 (48.51%), Query Frame = 1 

Query: 11  YFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-PFD 70
           YFV F D        Y +K K  V   F+ F A  E     K+  +  DNG EY      
Sbjct: 502 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 71  EYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGEALNTIVHVL 130
           ++C   GI +  T P TPQLNG++ER+ RT+            L +SFWGEA+ T  +++
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 621

Query: 131 NLTPCVPL--GSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGY 190
           N  P   L   SK P  +W  K     HLRVFG   +VH+ K+++ K D K+   +F+GY
Sbjct: 622 NRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY 681

Query: 191 SQDEFGYRLYDPTKKKLIRSRDVVFVEDQTI----ANIEKIGEQESKHSDNLIELSSTSL 250
             +  G++L+D   +K I +RDVV  E   +       E +  ++SK S+N     + S 
Sbjct: 682 EPN--GFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENK-NFPNDSR 741

Query: 251 TQLSTQIED---EVQNEQFFDTDESSEH 257
             + T+  +   E  N QF    + SE+
Sbjct: 742 KIIQTEFPNESKECDNIQFLKDSKESEN 765

[Close]
BLAST of CSPI01G19320 vs. Swiss-Prot
Match: YP14B_YEAST (Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-11
Identity = 53/207 (25.60%), Postives = 90/207 (43.48%), Query Frame = 1 

Query: 11  YFVAFTDDHLRTIWVYTL--KTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-P 70
           YF++FTD+  +  WVY L  + +D +L  F    A ++ +    +  ++ D G EY    
Sbjct: 686 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 745

Query: 71  FDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGEALNTIVH 130
             ++   NGI    T     + +G+AERLNRTL            LP   W  A+     
Sbjct: 746 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 805

Query: 131 VLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGY 190
           V N +   P   K  ++      +  S L  FG    V+   +   K+  +      L  
Sbjct: 806 VRN-SLASPKSKKSASQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHP 865

Query: 191 SQDEFGYRLYDPTKKKLIRSRDVVFVE 203
           S++ +GY +Y P+ KK + + + V ++
Sbjct: 866 SRNSYGYIIYLPSLKKTVDTTNYVILQ 890

[Close]
BLAST of CSPI01G19320 vs. Swiss-Prot
Match: YA11B_YEAST (Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-A PE=3 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-11
Identity = 57/210 (27.14%), Postives = 93/210 (44.29%), Query Frame = 1 

Query: 11  YFVAFTDDHLRTIWVYTL--KTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-P 70
           YF++FTD+  +  WVY L  + +D +L  F    A ++ +    +  ++ D G EY    
Sbjct: 127 YFISFTDETTKLRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 186

Query: 71  FDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGEAL--NTI 130
             ++   NGI    T     + +G+AERLNRTL            LP   W  A+  +TI
Sbjct: 187 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 246

Query: 131 VHVLNLTPCVPLGSKVPNRIWLG-KDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVF 190
           V     +P     SK   R   G   +  S L  FG    V+   +   K+  +      
Sbjct: 247 VRNSLASP----KSKKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYA 306

Query: 191 LGYSQDEFGYRLYDPTKKKLIRSRDVVFVE 203
           L  S++ +GY +Y P+ KK + + + V ++
Sbjct: 307 LHPSRNSYGYIIYLPSLKKTVDTTNYVILQ 331

[Close]
BLAST of CSPI01G19320 vs. Swiss-Prot
Match: YL13B_YEAST (Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR3 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-11
Identity = 53/207 (25.60%), Postives = 90/207 (43.48%), Query Frame = 1 

Query: 11  YFVAFTDDHLRTIWVYTL--KTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-P 70
           YF++FTD+  +  WVY L  + +D +L  F    A ++ +    +  ++ D G EY    
Sbjct: 686 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 745

Query: 71  FDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGEALNTIVH 130
             ++   NGI    T     + +G+AERLNRTL            LP   W  A+     
Sbjct: 746 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 805

Query: 131 VLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGY 190
           V N +   P   K  ++      +  S L  FG    V+   +   K+  +      L  
Sbjct: 806 VRN-SLASPKSKKSASQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHP 865

Query: 191 SQDEFGYRLYDPTKKKLIRSRDVVFVE 203
           S++ +GY +Y P+ KK + + + V ++
Sbjct: 866 SRNSYGYIIYLPSLKKTVDTTNYVILQ 890

[Close]
BLAST of CSPI01G19320 vs. TrEMBL
Match: A5C540_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024474 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 9.4e-103
Identity = 179/258 (69.38%), Postives = 207/258 (80.23%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 373 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 432

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY  PFDEYCR +GI+HQKT PKTPQLNG+AER+NRTL            LP+SFWGE
Sbjct: 433 GGEYSSPFDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGE 492

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+
Sbjct: 493 ALNTVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCKAFVHIPKDERSKLDAKTR 552

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 553 PCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDP 612

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             LT L TQ+EDE  ++Q
Sbjct: 613 APLTNLPTQVEDEAHDDQ 630

[Close]
BLAST of CSPI01G19320 vs. TrEMBL
Match: A5C9D7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 8.8e-101
Identity = 177/258 (68.60%), Postives = 204/258 (79.07%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 470 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 529

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY GPFDEYCR +G +HQKTPPKTPQLNG+AER+NRTL            LP+SFWGE
Sbjct: 530 GGEYSGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGE 589

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNTIVHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+
Sbjct: 590 ALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTR 649

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GY+ YD  +KKL RS DVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 650 PCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDP 709

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             LT L TQ+ED   ++Q
Sbjct: 710 APLTNLPTQVEDGAHDDQ 727

[Close]
BLAST of CSPI01G19320 vs. TrEMBL
Match: A5C3L0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 8.8e-101
Identity = 176/258 (68.22%), Postives = 204/258 (79.07%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 441 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 500

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY GPFDEYCR + I+HQKTPPKTPQLNG+AER+NRTL            LP+SFW E
Sbjct: 501 GGEYSGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWDE 560

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VHVLNLTPCVPL   V +RIW   +ISY HLRVFGCKAFVH+ KDER KLD KT+
Sbjct: 561 ALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDVKTR 620

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 621 PCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDL 680

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             L  L TQ+EDE  ++Q
Sbjct: 681 APLKNLPTQVEDEAHDDQ 698

[Close]
BLAST of CSPI01G19320 vs. TrEMBL
Match: A5B9T5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030853 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.8e-99
Identity = 178/278 (64.03%), Postives = 211/278 (75.90%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC++ DN
Sbjct: 244 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIQIDN 303

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY  PFDEYCR +GI+HQKTPPKTPQLNG+AE +NRTL            LP+SFWGE
Sbjct: 304 GGEYSSPFDEYCRQHGIRHQKTPPKTPQLNGLAESMNRTLVERVRCLLSQSQLPRSFWGE 363

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VH+LNLTPCVPL   VP+RIW   +I Y HLRVFGCKAFVH+ KDE  KLDAKT+
Sbjct: 364 ALNTVVHLLNLTPCVPLEFDVPDRIWSNNEICYDHLRVFGCKAFVHIPKDEISKLDAKTR 423

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY  DE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 424 PCVFIGYGHDELGYRFYDPMQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDL 483

Query: 241 TSLTQLSTQIEDEVQNEQFFDTD-ESSEHVGTEDNVQE 266
             LT   TQ+EDE  ++Q    D E+   V  +D+V E
Sbjct: 484 APLTNFPTQVEDEAHDDQHDMGDVETPTQVEVDDDVHE 521

[Close]
BLAST of CSPI01G19320 vs. TrEMBL
Match: Q5MG99_IPOBA (Hypothetical retrotransposon OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-91
Identity = 156/258 (60.47%), Postives = 201/258 (77.91%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MK +SLGGA YFV F DD+ R +WVYTLK K  VL  FK+FHA+VE++TG+KLKC+RTDN
Sbjct: 488 MKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDN 547

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEYCGPFDEYCR  GI+HQKTPPK PQLNG+AER+NRT+            LP SFW E
Sbjct: 548 GGEYCGPFDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAE 607

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           A++T VHV+NL+P + L ++VP+++W GKD+SY HLRVFGCKAFVHV +DER KLD+KT+
Sbjct: 608 AVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTR 667

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            C+F+GY  DEFGYRLYDP +KKL+RSRDVVF E+QTI +I+K+ + ES+ S +L+++  
Sbjct: 668 QCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEP 727

Query: 241 TS--LTQLSTQIEDEVQN 245
            S   T    ++++ VQN
Sbjct: 728 VSRRYTDDVDEVQENVQN 745

[Close]
BLAST of CSPI01G19320 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1 

Query: 101 LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVH 155
           LP++F  +A NT VH++N  P   +   VP+ +W     +YS+LR FGC A++H
Sbjct: 18  LPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAYIH 71

[Close]
BLAST of CSPI01G19320 vs. NCBI nr
Match: gi|147836424|emb|CAN77602.1| (hypothetical protein VITISV_024474 [Vitis vinifera])

HSP 1 Score: 381.3 bits (978), Expect = 1.3e-102
Identity = 179/258 (69.38%), Postives = 207/258 (80.23%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 373 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 432

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY  PFDEYCR +GI+HQKT PKTPQLNG+AER+NRTL            LP+SFWGE
Sbjct: 433 GGEYSSPFDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGE 492

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+
Sbjct: 493 ALNTVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCKAFVHIPKDERSKLDAKTR 552

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 553 PCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDP 612

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             LT L TQ+EDE  ++Q
Sbjct: 613 APLTNLPTQVEDEAHDDQ 630

[Close]
BLAST of CSPI01G19320 vs. NCBI nr
Match: gi|147816208|emb|CAN66323.1| (hypothetical protein VITISV_007384 [Vitis vinifera])

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 176/258 (68.22%), Postives = 204/258 (79.07%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 441 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 500

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY GPFDEYCR + I+HQKTPPKTPQLNG+AER+NRTL            LP+SFW E
Sbjct: 501 GGEYSGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWDE 560

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VHVLNLTPCVPL   V +RIW   +ISY HLRVFGCKAFVH+ KDER KLD KT+
Sbjct: 561 ALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDVKTR 620

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 621 PCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDL 680

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             L  L TQ+EDE  ++Q
Sbjct: 681 APLKNLPTQVEDEAHDDQ 698

[Close]
BLAST of CSPI01G19320 vs. NCBI nr
Match: gi|147784778|emb|CAN75440.1| (hypothetical protein VITISV_007304 [Vitis vinifera])

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 177/258 (68.60%), Postives = 204/258 (79.07%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDN
Sbjct: 470 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDN 529

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY GPFDEYCR +G +HQKTPPKTPQLNG+AER+NRTL            LP+SFWGE
Sbjct: 530 GGEYSGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGE 589

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNTIVHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+
Sbjct: 590 ALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTR 649

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY QDE GY+ YD  +KKL RS DVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 650 PCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDP 709

Query: 241 TSLTQLSTQIEDEVQNEQ 247
             LT L TQ+ED   ++Q
Sbjct: 710 APLTNLPTQVEDGAHDDQ 727

[Close]
BLAST of CSPI01G19320 vs. NCBI nr
Match: gi|147770163|emb|CAN65406.1| (hypothetical protein VITISV_030853 [Vitis vinifera])

HSP 1 Score: 369.8 bits (948), Expect = 4.1e-99
Identity = 178/278 (64.03%), Postives = 211/278 (75.90%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC++ DN
Sbjct: 244 MKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIQIDN 303

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEY  PFDEYCR +GI+HQKTPPKTPQLNG+AE +NRTL            LP+SFWGE
Sbjct: 304 GGEYSSPFDEYCRQHGIRHQKTPPKTPQLNGLAESMNRTLVERVRCLLSQSQLPRSFWGE 363

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           ALNT+VH+LNLTPCVPL   VP+RIW   +I Y HLRVFGCKAFVH+ KDE  KLDAKT+
Sbjct: 364 ALNTVVHLLNLTPCVPLEFDVPDRIWSNNEICYDHLRVFGCKAFVHIPKDEISKLDAKTR 423

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            CVF+GY  DE GYR YDP +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L  
Sbjct: 424 PCVFIGYGHDELGYRFYDPMQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDL 483

Query: 241 TSLTQLSTQIEDEVQNEQFFDTD-ESSEHVGTEDNVQE 266
             LT   TQ+EDE  ++Q    D E+   V  +D+V E
Sbjct: 484 APLTNFPTQVEDEAHDDQHDMGDVETPTQVEVDDDVHE 521

[Close]
BLAST of CSPI01G19320 vs. NCBI nr
Match: gi|56407681|gb|AAV88069.1| (hypothetical retrotransposon [Ipomoea batatas])

HSP 1 Score: 342.0 bits (876), Expect = 9.1e-91
Identity = 156/258 (60.47%), Postives = 201/258 (77.91%), Query Frame = 1 

Query: 1   MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDN 60
           MK +SLGGA YFV F DD+ R +WVYTLK K  VL  FK+FHA+VE++TG+KLKC+RTDN
Sbjct: 488 MKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDN 547

Query: 61  GGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL------------LPQSFWGE 120
           GGEYCGPFDEYCR  GI+HQKTPPK PQLNG+AER+NRT+            LP SFW E
Sbjct: 548 GGEYCGPFDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAE 607

Query: 121 ALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTK 180
           A++T VHV+NL+P + L ++VP+++W GKD+SY HLRVFGCKAFVHV +DER KLD+KT+
Sbjct: 608 AVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTR 667

Query: 181 ACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSS 240
            C+F+GY  DEFGYRLYDP +KKL+RSRDVVF E+QTI +I+K+ + ES+ S +L+++  
Sbjct: 668 QCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEP 727

Query: 241 TS--LTQLSTQIEDEVQN 245
            S   T    ++++ VQN
Sbjct: 728 VSRRYTDDVDEVQENVQN 745

The following BLAST results are available for this feature:
BLAST of CSPI01G19320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.2e-7149.11Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME3.8e-2832.84Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YP14B_YEAST9.3e-1125.60Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YA11B_YEAST9.3e-1127.14Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (stra... [more]
YL13B_YEAST9.3e-1125.60Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CSPI01G19320 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C540_VITVI9.4e-10369.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024474 PE=4 SV=1[more]
A5C9D7_VITVI8.8e-10168.60Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1[more]
A5C3L0_VITVI8.8e-10168.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1[more]
A5B9T5_VITVI2.8e-9964.03Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030853 PE=4 SV=1[more]
Q5MG99_IPOBA6.3e-9160.47Hypothetical retrotransposon OS=Ipomoea batatas PE=4 SV=1[more]
BLAST of CSPI01G19320 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00710.12.1e-0840.74ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CSPI01G19320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147836424|emb|CAN77602.1|1.3e-10269.38hypothetical protein VITISV_024474 [Vitis vinifera][more]
gi|147816208|emb|CAN66323.1|1.3e-10068.22hypothetical protein VITISV_007384 [Vitis vinifera][more]
gi|147784778|emb|CAN75440.1|1.3e-10068.60hypothetical protein VITISV_007304 [Vitis vinifera][more]
gi|147770163|emb|CAN65406.1|4.1e-9964.03hypothetical protein VITISV_030853 [Vitis vinifera][more]
gi|56407681|gb|AAV88069.1|9.1e-9160.47hypothetical retrotransposon [Ipomoea batatas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0019538 protein metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G19320.1CSPI01G19320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 6..100
score: 5.1
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 1..100
score: 15
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 8..141
score: 5.9
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 5..132
score: 1.16
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..207
score: 4.0E-88coord: 247..256
score: 4.0