CSPI01G18410 (gene) Wild cucumber (PI 183967)

NameCSPI01G18410
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 13832405 .. 13832832 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACGAGAAAGCAAGTTATGAGAAGGAAACGTGAAGAAGAGATTGAAGAAAAGGTGTGTCTTGTGCATTGTTGTATTTCAATTCATAGAATGTACAACATTGTCTAAATCCATAATATATCTTGATGCACAGGAAGATATTGAAAGTGAAGAAGATGAACAAGGAAAAGAAGATAAAGATGAAGAAGGACAAGGAAAGACCACACTAAATGAGGAATCCAATTCATCAACAAAAGAGACAAGTGACCAAAATGAGGGATCCATGAATAATAAAAAGAGTAAAGAAAAGGGAAAGAAAGTAACCATATATAACATTCGATAACTGTAACTGTTTCATTTTTATGGATTTTCGCTATAACTGTAACGTTTTTGTAACATAGGTTAAGACTACTAAGAAGGAAGAAAAGGGAAAAGAAGATAGATGA

mRNA sequence

ATGAATACGAGAAAGCAAGTTATGAGAAGGAAACGTGAAGAAGAGATTGAAGAAAAGGAAGATATTGAAAGTGAAGAAGATGAACAAGGAAAAGAAGATAAAGATGAAGAAGGACAAGGAAAGACCACACTAAATGAGGAATCCAATTCATCAACAAAAGAGACAAGTGACCAAAATGAGGGATCCATGAATAATAAAAAGAGTAAAGAAAAGGGAAAGAAAGTTAAGACTACTAAGAAGGAAGAAAAGGGAAAAGAAGATAGATGA

Coding sequence (CDS)

ATGAATACGAGAAAGCAAGTTATGAGAAGGAAACGTGAAGAAGAGATTGAAGAAAAGGAAGATATTGAAAGTGAAGAAGATGAACAAGGAAAAGAAGATAAAGATGAAGAAGGACAAGGAAAGACCACACTAAATGAGGAATCCAATTCATCAACAAAAGAGACAAGTGACCAAAATGAGGGATCCATGAATAATAAAAAGAGTAAAGAAAAGGGAAAGAAAGTTAAGACTACTAAGAAGGAAGAAAAGGGAAAAGAAGATAGATGA
BLAST of CSPI01G18410 vs. TrEMBL
Match: A0A0A0LTN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1

Query: 1  MNTRKQVMRRKREEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE 60
          MNTRKQVMRRK EEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE
Sbjct: 1  MNTRKQVMRRKCEEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE 60

Query: 61 GSMNNKKSKEKGKKVKTTKKEEKGKEDR 89
          GSMNNKKSKEKGKKVKTTKKEEKGKEDR
Sbjct: 61 GSMNNKKSKEKGKKVKTTKKEEKGKEDR 88

BLAST of CSPI01G18410 vs. NCBI nr
Match: gi|700210194|gb|KGN65290.1| (hypothetical protein Csa_1G302170 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1

Query: 1  MNTRKQVMRRKREEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE 60
          MNTRKQVMRRK EEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE
Sbjct: 1  MNTRKQVMRRKCEEEIEEKEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNE 60

Query: 61 GSMNNKKSKEKGKKVKTTKKEEKGKEDR 89
          GSMNNKKSKEKGKKVKTTKKEEKGKEDR
Sbjct: 61 GSMNNKKSKEKGKKVKTTKKEEKGKEDR 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTN1_CUCSA1.4e-2998.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700210194|gb|KGN65290.1|1.9e-2998.86hypothetical protein Csa_1G302170 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G18410.1CSPI01G18410.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 5..32
scor

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G18410CsaV3_1G029610Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None