CSPI01G18400 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G18400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 13811494 .. 13811862 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAGCGTTTCGAACGGATGGGCAGGGGTTTCCAAAAGATTGACTTCGCGTGCAGCTCGTCCTTTGGGGTGGGCAGACGTCGTCGACGACATTGGCAGCAAACGGTCGGATTTGTGGACGTCTGGCGGCAGAGGGTTTCGATGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCGAACGGATGGGCCGGGGCTTCCAAAAGATTGACTTCGCCCGCGGGGTTCTTTGGGGTGGGTAGACGTCGTCGACGACAATGGAAGCAAACGGTCGAAGTTGTGGACGACAGGTTGCAGAGGGGTTTCGGTGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGA

mRNA sequence

ATGGAGGTGAGCGTTTCGAACGGATGGGCAGGGGTTTCCAAAAGATTGACTTCGCGTGCAGCTCGTCCTTTGGGGTGGGCAGACGTCGTCGACGACATTGGCAGCAAACGGTCGGATTTGTGGACGTCTGGCGGCAGAGGGTTTCGATGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCGAACGGATGGGCCGGGGCTTCCAAAAGATTGACTTCGCCCGCGGGGTTCTTTGGGGTGGGTAGACGTCGTCGACGACAATGGAAGCAAACGGTCGAAGTTGTGGACGACAGGTTGCAGAGGGGTTTCGGTGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGA

Coding sequence (CDS)

ATGGAGGTGAGCGTTTCGAACGGATGGGCAGGGGTTTCCAAAAGATTGACTTCGCGTGCAGCTCGTCCTTTGGGGTGGGCAGACGTCGTCGACGACATTGGCAGCAAACGGTCGGATTTGTGGACGTCTGGCGGCAGAGGGTTTCGATGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCGAACGGATGGGCCGGGGCTTCCAAAAGATTGACTTCGCCCGCGGGGTTCTTTGGGGTGGGTAGACGTCGTCGACGACAATGGAAGCAAACGGTCGAAGTTGTGGACGACAGGTTGCAGAGGGGTTTCGGTGTGTGTGGGGGGTTTCGAATGGGTTTTTTCGAATGGAGGTGA
Homology
[Close]
BLAST of CSPI01G18400 vs. TrEMBL
Match: A0A0A0KFH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G193630 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-38
Identity = 92/134 (68.66%), Postives = 93/134 (69.40%), Query Frame = 1 

Query: 1   MEVSVSNGWAGVSKRLTSRAARPLGWADVVDDIGSKRSDLWTSGGRGFR----------- 60
           MEVSV NGWA VSKRLTSRAARPLGWADVVDD GSKRS+LWTSGGRGFR           
Sbjct: 1   MEVSVLNGWAEVSKRLTSRAARPLGWADVVDDNGSKRSELWTSGGRGFRRRQRQWKQAVG 60

Query: 61  -----------CVWGVSNGFFRMEVSVSNGWAGASKRLTSPAGFFGVGRRRRRQWKQTVE 113
                      CV GVSNGFFRMEVSVSN W   SKRLTS AGFFGVGR RRRQWKQ  E
Sbjct: 61  VVDGRRQRVSVCV-GVSNGFFRMEVSVSNEWVRVSKRLTSRAGFFGVGRCRRRQWKQADE 120

[Close]
BLAST of CSPI01G18400 vs. TrEMBL
Match: A0A0A0KYT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G220860 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 42/94 (44.68%), Postives = 46/94 (48.94%), Query Frame = 1 

Query: 1  MEVSVSNGWAGVSKRLTSRAA----------------------------RPLGWADVVDD 60
          MEVSVSNG AGVSKRLTS                                PLGWA VVDD
Sbjct: 1  MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61 IGSKRSDLWTSGGRGFRCV----WGVSNGFFRME 63
           GSK+S+LWT+    FRCV    W  SNG  R +
Sbjct: 61 NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQ 94

[Close]
BLAST of CSPI01G18400 vs. NCBI nr
Match: gi|700191973|gb|KGN47177.1| (hypothetical protein Csa_6G193630 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-38
Identity = 92/134 (68.66%), Postives = 93/134 (69.40%), Query Frame = 1 

Query: 1   MEVSVSNGWAGVSKRLTSRAARPLGWADVVDDIGSKRSDLWTSGGRGFR----------- 60
           MEVSV NGWA VSKRLTSRAARPLGWADVVDD GSKRS+LWTSGGRGFR           
Sbjct: 1   MEVSVLNGWAEVSKRLTSRAARPLGWADVVDDNGSKRSELWTSGGRGFRRRQRQWKQAVG 60

Query: 61  -----------CVWGVSNGFFRMEVSVSNGWAGASKRLTSPAGFFGVGRRRRRQWKQTVE 113
                      CV GVSNGFFRMEVSVSN W   SKRLTS AGFFGVGR RRRQWKQ  E
Sbjct: 61  VVDGRRQRVSVCV-GVSNGFFRMEVSVSNEWVRVSKRLTSRAGFFGVGRCRRRQWKQADE 120

[Close]
BLAST of CSPI01G18400 vs. NCBI nr
Match: gi|700198821|gb|KGN53979.1| (hypothetical protein Csa_4G220860 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 42/94 (44.68%), Postives = 46/94 (48.94%), Query Frame = 1 

Query: 1  MEVSVSNGWAGVSKRLTSRAA----------------------------RPLGWADVVDD 60
          MEVSVSNG AGVSKRLTS                                PLGWA VVDD
Sbjct: 1  MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61 IGSKRSDLWTSGGRGFRCV----WGVSNGFFRME 63
           GSK+S+LWT+    FRCV    W  SNG  R +
Sbjct: 61 NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQ 94

The following BLAST results are available for this feature:
BLAST of CSPI01G18400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G18400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFH7_CUCSA3.8e-3868.66Uncharacterized protein OS=Cucumis sativus GN=Csa_6G193630 PE=4 SV=1[more]
A0A0A0KYT3_CUCSA2.0e-0744.68Uncharacterized protein OS=Cucumis sativus GN=Csa_4G220860 PE=4 SV=1[more]
BLAST of CSPI01G18400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G18400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191973|gb|KGN47177.1|5.4e-3868.66hypothetical protein Csa_6G193630 [Cucumis sativus][more]
gi|700198821|gb|KGN53979.1|2.9e-0744.68hypothetical protein Csa_4G220860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G18400.1CSPI01G18400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G18400Cucumber (Chinese Long) v2cpicuB001
CSPI01G18400Cucumber (Chinese Long) v2cpicuB014
CSPI01G18400Watermelon (Charleston Gray)cpiwcgB014
CSPI01G18400Watermelon (97103) v1cpiwmB085
CSPI01G18400Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G18400Melon (DHL92) v3.6.1cpimedB067
CSPI01G18400Cucumber (Gy14) v2cgybcpiB002
CSPI01G18400Cucumber (Chinese Long) v3cpicucB000
CSPI01G18400Cucumber (Chinese Long) v3cpicucB020
CSPI01G18400Watermelon (97103) v2cpiwmbB024
CSPI01G18400Wax gourdcpiwgoB006
CSPI01G18400Wild cucumber (PI 183967)cpicpiB006
CSPI01G18400Cucumber (Gy14) v1cgycpiB096