CSPI01G18120 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATTCTATAAATACCTGCACCAATTTCGCCAAAATACATTACCAAATTCACAGACCCATTTCCTAAGTTTCGAAGTTTCAATATTATTAGATTTTCGAAATTAAAATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGAAAGAAAGTAAAGAGAGTGGAAAAGATCAAAAGTAGGATATTGAATAAAAACCACAGCTAATGGTGGGTGGTATCCGTGACCAGACTGGAGTAATACTTGAATGCATTTTGAGTCTCACCTCTCTTTTATCATTTCTTCTTTTATCTCTTAAATATTATTATTATTATTATTACGTGAAAATTAAAATTAAAATTAGATAATTCGGTGGAATTGATAAAATTAGATGATGTTTTAGATGCATGTAAGTATTTCTCTCGTAATTATAATTAGTGTAGTACTTTGTATCATTGTGTCAGTAAACTTATGACGATTTTATTTACTTTTAAGTTTTAAAGATGATGTATTTTCCAAAAACTTTGTTAATAGTTTACTCTTGATTTATCCACAACTTTAATTT ATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGA ATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGA
BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0A0LW94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 4.0e-49 Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1
BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 9.8e-24 Identity = 105/149 (70.47%), Postives = 116/149 (77.85%), Query Frame = 1
BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A072UTB5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129770 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20 Identity = 95/143 (66.43%), Postives = 111/143 (77.62%), Query Frame = 1
BLAST of CSPI01G18120 vs. TrEMBL
Match: I1LVX4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G090700 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19 Identity = 95/145 (65.52%), Postives = 107/145 (73.79%), Query Frame = 1
BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0S3R811_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19 Identity = 91/140 (65.00%), Postives = 107/140 (76.43%), Query Frame = 1
BLAST of CSPI01G18120 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein) HSP 1 Score: 91.3 bits (225), Expect = 5.0e-19 Identity = 82/127 (64.57%), Postives = 97/127 (76.38%), Query Frame = 1
BLAST of CSPI01G18120 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein) HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18 Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1
BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|778660323|ref|XP_011656027.1| (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus]) HSP 1 Score: 202.2 bits (513), Expect = 5.7e-49 Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1
BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|659086211|ref|XP_008443814.1| (PREDICTED: uncharacterized protein AFUA_6G14090-like [Cucumis melo]) HSP 1 Score: 185.7 bits (470), Expect = 5.5e-44 Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 1
BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|659086209|ref|XP_008443813.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]) HSP 1 Score: 122.1 bits (305), Expect = 7.5e-25 Identity = 107/148 (72.30%), Postives = 117/148 (79.05%), Query Frame = 1
BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus]) HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23 Identity = 105/149 (70.47%), Postives = 116/149 (77.85%), Query Frame = 1
BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|697114881|ref|XP_009611361.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomentosiformis]) HSP 1 Score: 115.5 bits (288), Expect = 7.0e-23 Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |