CSPI01G18120 (gene) Wild cucumber (PI 183967)

NameCSPI01G18120
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionglycine-rich protein
LocationChr1 : 13590869 .. 13591776 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCTATAAATACCTGCACCAATTTCGCCAAAATACATTACCAAATTCACAGACCCATTTCCTAAGTTTCGAAGTTTCAATATTATTAGATTTTCGAAATTAAAATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGAAAGAAAGTAAAGAGAGTGGAAAAGATCAAAAGTAGGATATTGAATAAAAACCACAGCTAATGGTGGGTGGTATCCGTGACCAGACTGGAGTAATACTTGAATGCATTTTGAGTCTCACCTCTCTTTTATCATTTCTTCTTTTATCTCTTAAATATTATTATTATTATTATTACGTGAAAATTAAAATTAAAATTAGATAATTCGGTGGAATTGATAAAATTAGATGATGTTTTAGATGCATGTAAGTATTTCTCTCGTAATTATAATTAGTGTAGTACTTTGTATCATTGTGTCAGTAAACTTATGACGATTTTATTTACTTTTAAGTTTTAAAGATGATGTATTTTCCAAAAACTTTGTTAATAGTTTACTCTTGATTTATCCACAACTTTAATTT

mRNA sequence

ATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGA

Coding sequence (CDS)

ATGGCCTCTATCAAAGCTATTGCTGTTCTCTGTTTAGTACTATGTATGTCAGTGATTGAATCAGAAGCAGGGCGTGTGGCCAGGAAGGACCTGGGCCTTGATCTTGGTGGCTTGGGAGTTGGTCTCGGCCTTGGTTTGGGGTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGTTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGGTCCTATTCGTCCTCATCCTCACATTCATCAAGCTCTAGCTATGGAGGGTCCGGTGCAGGCTCTGAGGCCGGTTCATATGCTGGGTCTTACGCAGGGTCACGTGCTGGGTCAGGTTCCGGCAGCAGAAACGGCGCCAGCGGGGGAGAGGGTCATGGCTATGGCGAGGGACATGGTTATGGTGAAGGAGGTAACAACTGA
BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0A0LW94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-49
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSG GA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGHGYGEGGNN 135
           GYGEGHGYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-24
Identity = 105/149 (70.47%), Postives = 116/149 (77.85%), Query Frame = 1

Query: 1   MASIKAIA-VLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVG 60
           MASIK++A V+CL+L  S I SE GRVARKDLG+DLGG+GVGLG G+GLG+GG SGSG G
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSE-GRVARKDLGIDLGGVGVGLGTGIGLGIGG-SGSGSG 60

Query: 61  AGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG-SRNGASG-- 120
           +GSGSGSGSGS SSSSS+SSSSS  GSGAGSEAGSYAGSYAGSRAGSGSG +RNG SG  
Sbjct: 61  SGSGSGSGSGSSSSSSSYSSSSS-SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120

Query: 121 --------------GEGHGYGEGHGYGEG 132
                           G GYGEGHGYGEG
Sbjct: 121 SGYGGGSGRGGGSNDNGEGYGEGHGYGEG 146

BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A072UTB5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129770 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 95/143 (66.43%), Postives = 111/143 (77.62%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MA+  +  +L +++ MSVIESE+ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSG GA
Sbjct: 1   MAAPWSCCLLAVLVLMSVIESES-RVARKDLGLDLGGLGIGLGAGVGLGIGGGSGSGAGA 60

Query: 61  GSGS----GSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRN---- 120
           G+GS    G+GSGS SSSSS SSSSS   SG+GS AGS AGSYAGSRAGSGSG R+    
Sbjct: 61  GAGSGAGAGAGSGSGSSSSSSSSSSSSSSSGSGSGAGSEAGSYAGSRAGSGSGGRSRSGG 120

Query: 121 -GASGGEGHGYGEGHGYGEGGNN 135
            G  GG G GYG+G GYGEGG +
Sbjct: 121 RGGGGGGGGGYGQGSGYGEGGGD 142

BLAST of CSPI01G18120 vs. TrEMBL
Match: I1LVX4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G090700 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 95/145 (65.52%), Postives = 107/145 (73.79%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MA+  +  +L L+L MS I SE+ RVARKDLGLDLGGLGVGLGLGLGLG+GGGSGSG GA
Sbjct: 1   MATSWSCYLLALLLFMSTIVSES-RVARKDLGLDLGGLGVGLGLGLGLGIGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSS------SHSSSSSYGGSGAGSEAGSYAGSYAGSRA--------GS 120
           G+GSGSGSGS SSSS      S SSSS  GGSGAGSEAGSYAGS AGS +        G 
Sbjct: 61  GAGSGSGSGSGSSSSSASSSASSSSSSGSGGSGAGSEAGSYAGSRAGSGSGRSQGRGGGG 120

Query: 121 GSGSRNGASGGEGHGYGEGHGYGEG 132
           G G   G  GG G+G+GEG+G+GEG
Sbjct: 121 GGGGGGGGGGGSGYGHGEGYGHGEG 144

BLAST of CSPI01G18120 vs. TrEMBL
Match: A0A0S3R811_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19
Identity = 91/140 (65.00%), Postives = 107/140 (76.43%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MA+ ++  +L L+L +S I SE+ R  RKDLGLDLGGLGVGLG+GLGLG+GGGSGSG GA
Sbjct: 1   MAASRSSCLLALLLFVSAIASES-RAVRKDLGLDLGGLGVGLGVGLGLGIGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSS--YGGSGAGSEAGSYAGSYAGSRA-------GSGSGSR 120
           G+GSGSGSGS S+SSS SSSSS   GGSGAGSEAGSYAGS AGS +       G G G  
Sbjct: 61  GAGSGSGSGSSSASSSASSSSSSGSGGSGAGSEAGSYAGSRAGSGSGGRGGGGGGGGGGG 120

Query: 121 NGASGGEGHGYGEGHGYGEG 132
            G  GG G+G+GEG+G+GEG
Sbjct: 121 GGGGGGSGYGHGEGYGHGEG 139

BLAST of CSPI01G18120 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-19
Identity = 82/127 (64.57%), Postives = 97/127 (76.38%), Query Frame = 1

Query: 6   AIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGAGSGSG 65
           ++ ++ L+L  SV+ SE+ RVARKDLGLDLGG+G G+G+G+G+G GGGSGSG GAGSGSG
Sbjct: 9   SLILITLILATSVLVSES-RVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGAGSGSG 68

Query: 66  SGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGHGYGEG 125
            G  S SSSSS SSSSS GG G   +AGS AGSYAGS AGSGSG R+G+  G G G G G
Sbjct: 69  GGGSSSSSSSSSSSSSSSGGGGG--DAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGG 128

Query: 126 HGYGEGG 133
           HG G GG
Sbjct: 129 HGGGGGG 131

BLAST of CSPI01G18120 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MA  + + +L LV+  S++     R+ARKDLG+DLGG+G+GLG+GLG+GLGGGSGSG GA
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGS 111
           GSGSGSGS S SSSSS SSSSS   SG+G  AGS AGS+AGSRAGSGSG+
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSS---SGSGGSAGSSAGSFAGSRAGSGSGN 107

BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|778660323|ref|XP_011656027.1| (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 5.7e-49
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSG GA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGHGYGEGGNN 135
           GYGEGHGYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|659086211|ref|XP_008443814.1| (PREDICTED: uncharacterized protein AFUA_6G14090-like [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 5.5e-44
Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MASIKAI VLCLVLCMSVIESEAGRVARK+LGLDLGGLGVGLGLGLGLG+GGGSGSG GA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGS  RNGASGGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGHGYGEGGNN 135
            HGYGEGHGYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|659086209|ref|XP_008443813.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 7.5e-25
Identity = 107/148 (72.30%), Postives = 117/148 (79.05%), Query Frame = 1

Query: 1   MASIKAIA-VLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVG 60
           MASIK++A V+CL+L  SV  SE GRVARKDLG+DLGGLGVGLG G+GLG+GG SGSG G
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSE-GRVARKDLGIDLGGLGVGLGAGIGLGIGG-SGSGSG 60

Query: 61  AGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG-SRNGASG-- 120
           +GSGSGSGSGS SSSSS+SSSSS  GSGAGSEAGSYAGSYAGSRAGSGSG +RNG SG  
Sbjct: 61  SGSGSGSGSGSSSSSSSYSSSSS-SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120

Query: 121 -------------GEGHGYGEGHGYGEG 132
                        G G GYGEGHGYGEG
Sbjct: 121 SGYGGGSGRGGSNGNGEGYGEGHGYGEG 145

BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 105/149 (70.47%), Postives = 116/149 (77.85%), Query Frame = 1

Query: 1   MASIKAIA-VLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVG 60
           MASIK++A V+CL+L  S I SE GRVARKDLG+DLGG+GVGLG G+GLG+GG SGSG G
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSE-GRVARKDLGIDLGGVGVGLGTGIGLGIGG-SGSGSG 60

Query: 61  AGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG-SRNGASG-- 120
           +GSGSGSGSGS SSSSS+SSSSS  GSGAGSEAGSYAGSYAGSRAGSGSG +RNG SG  
Sbjct: 61  SGSGSGSGSGSSSSSSSYSSSSS-SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120

Query: 121 --------------GEGHGYGEGHGYGEG 132
                           G GYGEGHGYGEG
Sbjct: 121 SGYGGGSGRGGGSNDNGEGYGEGHGYGEG 146

BLAST of CSPI01G18120 vs. NCBI nr
Match: gi|697114881|ref|XP_009611361.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomentosiformis])

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-23
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 1

Query: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGVGA 60
           MA +KA + L  ++  + +     RVAR DLGLDLGG+GVGLG+G+GLGLGGGSGSG GA
Sbjct: 1   MAKVKAFSFLVFLVFSNFVVMSESRVARMDLGLDLGGVGVGLGVGIGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASG-GEG 120
           GSGSGSGS S SSSSS SSSSS GG G GSEAGS AGSYAGSRAGSGSG+R G+ G G G
Sbjct: 61  GSGSGSGSSSSSSSSSSSSSSSTGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSGGRGYG 120

Query: 121 HGYGEGHGYGEGGN 134
            GYG GHG G+GGN
Sbjct: 121 GGYGGGHGGGDGGN 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW94_CUCSA4.0e-4999.25Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1[more]
A0A0A0LTK9_CUCSA9.8e-2470.47Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1[more]
A0A072UTB5_MEDTR1.0e-2066.43Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129770 PE=4 SV=1[more]
I1LVX4_SOYBN1.1e-1965.52Uncharacterized protein OS=Glycine max GN=GLYMA_13G090700 PE=4 SV=1[more]
A0A0S3R811_PHAAN1.9e-1965.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=... [more]
Match NameE-valueIdentityDescription
AT4G30460.15.0e-1964.57 glycine-rich protein[more]
AT4G30450.11.9e-1866.36 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|778660323|ref|XP_011656027.1|5.7e-4999.25PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus][more]
gi|659086211|ref|XP_008443814.1|5.5e-4493.38PREDICTED: uncharacterized protein AFUA_6G14090-like [Cucumis melo][more]
gi|659086209|ref|XP_008443813.1|7.5e-2572.30PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
gi|778660326|ref|XP_004146660.2|1.4e-2370.47PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
gi|697114881|ref|XP_009611361.1|7.0e-2369.40PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomen... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G18120.1CSPI01G18120.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..132
score: 8.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G18120MELO3C010184.2Melon (DHL92) v3.6.1cpimedB051
CSPI01G18120CsaV3_1G029340Cucumber (Chinese Long) v3cpicucB000
CSPI01G18120Cla97C06G122050Watermelon (97103) v2cpiwmbB068
CSPI01G18120Bhi02G000643Wax gourdcpiwgoB099
CSPI01G18120CsGy1G018180Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None