CSPI01G17780 (gene) Wild cucumber (PI 183967)

NameCSPI01G17780
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRibosomal RNA small subunit methyltransferase G
LocationChr1 : 13369863 .. 13370351 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTGCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAGTCAACATAACTCGACCCCGGTTTTCGACTTGAACCAGAAGGAAAGAATGTGCAGTGGGAGAGATGCTAGCGAGAGAAACATCACTCCATTTTTTGACTTGAACCAAATTTCGGTAACTGAGGAACTTATGACAGCTAAACTCTACAAATGTAATTTTTCACTACAATCTTGACCACCCCCCTTCCTAACAATCTCTATATTTATTTTGGTTCAGATAGAGGAAGAGGAATTGCAGACCCATTACGAGCCGCTGAGAGTTGATGAGCTGAAGAAAAGCCTTCTTCGAGGAGGGAACGATGAGCAGCAAAACGATATCAAGATTTCTGCATGCAGGAGTATTGGAGATGGTCCAAGTCGAGCTGGTAAAAGAAAAATTTCATGGCAAGATCAGGTAGCTTTAAGGGTTTGA

mRNA sequence

ATGCCTCTGCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAGTCAACATAACTCGACCCCGGTTTTCGACTTGAACCAGAAGGAAAGAATGTGCAGTGGGAGAGATGCTAGCGAGAGAAACATCACTCCATTTTTTGACTTGAACCAAATTTCGATAGAGGAAGAGGAATTGCAGACCCATTACGAGCCGCTGAGAGTTGATGAGCTGAAGAAAAGCCTTCTTCGAGGAGGGAACGATGAGCAGCAAAACGATATCAAGATTTCTGCATGCAGGAGTATTGGAGATGGTCCAAGTCGAGCTGGTAAAAGAAAAATTTCATGGCAAGATCAGGTAGCTTTAAGGGTTTGA

Coding sequence (CDS)

ATGCCTCTGCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAGTCAACATAACTCGACCCCGGTTTTCGACTTGAACCAGAAGGAAAGAATGTGCAGTGGGAGAGATGCTAGCGAGAGAAACATCACTCCATTTTTTGACTTGAACCAAATTTCGATAGAGGAAGAGGAATTGCAGACCCATTACGAGCCGCTGAGAGTTGATGAGCTGAAGAAAAGCCTTCTTCGAGGAGGGAACGATGAGCAGCAAAACGATATCAAGATTTCTGCATGCAGGAGTATTGGAGATGGTCCAAGTCGAGCTGGTAAAAGAAAAATTTCATGGCAAGATCAGGTAGCTTTAAGGGTTTGA
BLAST of CSPI01G17780 vs. TrEMBL
Match: A0A0A0LW13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256780 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL
Sbjct: 128 MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 187

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
           NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 188 NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 247

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 248 QDQVALRV 255

BLAST of CSPI01G17780 vs. TrEMBL
Match: A0A0A0LTB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256785 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 97/128 (75.78%), Postives = 97/128 (75.78%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTP                           
Sbjct: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTP--------------------------- 60

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
               IEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 61  ----IEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 97

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 121 QDQVALRV 97

BLAST of CSPI01G17780 vs. TrEMBL
Match: A0A0S3R6D4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G413600 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 78/131 (59.54%), Postives = 105/131 (80.15%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAK--TSSRKKASQHNS-TPVFDLNQKERMCSGRDASERNITPF 60
           +PLQ ++ +   DLNQ A+  +SS+K ++ H S +P  DLN KER+ S ++A+++++TPF
Sbjct: 131 VPLQKTSHL--FDLNQNARNFSSSKKDSTIHGSASPALDLNHKERIHSSKEATKKSVTPF 190

Query: 61  FDLNQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRK 120
           FDLNQIS EEEELQ + EP+R++E K+S  R G+DEQ NDIK+SACRS+GDG +RAGKRK
Sbjct: 191 FDLNQISREEEELQGNSEPMRIEEPKRSTQRVGSDEQHNDIKLSACRSVGDGANRAGKRK 250

Query: 121 ISWQDQVALRV 129
           ISWQDQVALRV
Sbjct: 251 ISWQDQVALRV 259

BLAST of CSPI01G17780 vs. TrEMBL
Match: A0A0L9TQV1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g243200 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 78/131 (59.54%), Postives = 105/131 (80.15%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAK--TSSRKKASQHNS-TPVFDLNQKERMCSGRDASERNITPF 60
           +PLQ ++ +   DLNQ A+  +SS+K ++ H S +P  DLN KER+ S ++A+++++TPF
Sbjct: 131 VPLQKTSHL--FDLNQNARNFSSSKKDSTIHGSASPALDLNHKERIHSSKEATKKSVTPF 190

Query: 61  FDLNQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRK 120
           FDLNQIS EEEELQ + EP+R++E K+S  R G+DEQ NDIK+SACRS+GDG +RAGKRK
Sbjct: 191 FDLNQISREEEELQGNSEPMRIEEPKRSTQRVGSDEQHNDIKLSACRSVGDGANRAGKRK 250

Query: 121 ISWQDQVALRV 129
           ISWQDQVALRV
Sbjct: 251 ISWQDQVALRV 259

BLAST of CSPI01G17780 vs. TrEMBL
Match: B9STT5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0623840 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.5e-32
Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 1

Query: 2   PLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDLN 61
           P   S P+   D+NQK K   RK+A+  NS  + DLNQKER+ SG++A+ RN TP FDLN
Sbjct: 137 PTLQSAPLN-FDINQKQKMYIRKEAALRNSAALPDLNQKERIYSGKEATVRNNTPVFDLN 196

Query: 62  QISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISWQ 121
           QIS EEEELQ + E +R++E K  L+RGG+DEQ  D+K+SACRS+G+G +R+GKRKISWQ
Sbjct: 197 QISREEEELQANGEMMRMEEPKICLIRGGSDEQHTDMKLSACRSVGNGANRSGKRKISWQ 256

Query: 122 DQVALRV 129
           DQVALRV
Sbjct: 257 DQVALRV 262

BLAST of CSPI01G17780 vs. TAIR10
Match: AT5G57910.1 (AT5G57910.1 unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 1

Query: 27  SQHNSTPVFDLNQKERMCSGRDASERNITPFFDLNQISIEEEE----LQTHYEPLRVDEL 86
           ++H S P  DLN  E+       S +   P FDLNQIS EEE+    +  + E  RV+E 
Sbjct: 104 TKHVSLP--DLNHSEKAHDETKTSPKRRVPLFDLNQISGEEEQETEAVDNNQENTRVEES 163

Query: 87  K--KSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISWQDQV-ALRV 129
              K L+    + QQ D+K S+CR+ G+G   + KRKISWQD V ALRV
Sbjct: 164 NSCKRLMISSIEMQQKDVKPSSCRNGGNG---SNKRKISWQDPVAALRV 207

BLAST of CSPI01G17780 vs. TAIR10
Match: AT4G30630.1 (AT4G30630.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1

Query: 9   IPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDA----------------SER 68
           +P  DL  K    + K+A  +N     DL++K +   G D                 S  
Sbjct: 103 VPCFDLKLKNTICNEKEALANNVASC-DLDKKRKRSRGSDVLTFPVSLPDLNGEGNTSGT 162

Query: 69  NITPFFDLNQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSR 128
           +  P FDLNQIS EEEE + + E +  + +K ++L     +   + K+  C  +    +R
Sbjct: 163 DKVPGFDLNQISREEEEPEVNGEHMVAEAMKNAMLDNRISDLHVERKLPICGDVEKELNR 222

BLAST of CSPI01G17780 vs. NCBI nr
Match: gi|778665044|ref|XP_011648472.1| (PREDICTED: uncharacterized protein LOC101209712 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL
Sbjct: 319 MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 378

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
           NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 379 NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 438

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 439 QDQVALRV 446

BLAST of CSPI01G17780 vs. NCBI nr
Match: gi|700210073|gb|KGN65169.1| (hypothetical protein Csa_1G256780 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL
Sbjct: 128 MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 187

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
           NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 188 NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 247

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 248 QDQVALRV 255

BLAST of CSPI01G17780 vs. NCBI nr
Match: gi|659086278|ref|XP_008443848.1| (PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 4.6e-64
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MP+QNSTPIPVLDLNQKAKTSSRKKA+QHNS PVFDLNQKERMCSGRDASERNITPFFDL
Sbjct: 128 MPMQNSTPIPVLDLNQKAKTSSRKKANQHNSIPVFDLNQKERMCSGRDASERNITPFFDL 187

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
           NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 188 NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 247

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 248 QDQVALRV 255

BLAST of CSPI01G17780 vs. NCBI nr
Match: gi|700210074|gb|KGN65170.1| (hypothetical protein Csa_1G256785 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 97/128 (75.78%), Postives = 97/128 (75.78%), Query Frame = 1

Query: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTPVFDLNQKERMCSGRDASERNITPFFDL 60
           MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTP                           
Sbjct: 1   MPLQNSTPIPVLDLNQKAKTSSRKKASQHNSTP--------------------------- 60

Query: 61  NQISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 120
               IEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW
Sbjct: 61  ----IEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISW 97

Query: 121 QDQVALRV 129
           QDQVALRV
Sbjct: 121 QDQVALRV 97

BLAST of CSPI01G17780 vs. NCBI nr
Match: gi|1021473654|ref|XP_016200305.1| (PREDICTED: uncharacterized protein LOC107641321 [Arachis ipaensis])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 1

Query: 11  VLDLNQKAKTSSRKKASQHN--STPVFDLNQKERMCSGRDASERNITPFFDLNQISIEEE 70
           V DLNQ A+T SRK AS H   + PV DLN K+R+ +G++AS++NITPFFDLNQIS EEE
Sbjct: 141 VFDLNQNARTLSRKVASFHTPATAPVLDLNHKDRIHNGKEASKKNITPFFDLNQISREEE 200

Query: 71  ELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGDGPSRAGKRKISWQDQVALRV 129
           ELQ + EP+ ++E K+S  R   DEQQNDI +SACR+IGDG +R GKRKISWQDQVALRV
Sbjct: 201 ELQGNSEPMIIEEPKRSTQRVVGDEQQNDIMLSACRNIGDGSNRTGKRKISWQDQVALRV 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW13_CUCSA1.7e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256780 PE=4 SV=1[more]
A0A0A0LTB8_CUCSA1.0e-4175.78Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256785 PE=4 SV=1[more]
A0A0S3R6D4_PHAAN2.2e-3359.54Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G413600 PE=... [more]
A0A0L9TQV1_PHAAN2.2e-3359.54Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g243200 PE=4 SV=1[more]
B9STT5_RICCO5.5e-3259.84Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0623840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G57910.13.7e-1143.12 unknown protein[more]
AT4G30630.14.5e-0930.88 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778665044|ref|XP_011648472.1|2.4e-65100.00PREDICTED: uncharacterized protein LOC101209712 [Cucumis sativus][more]
gi|700210073|gb|KGN65169.1|2.4e-65100.00hypothetical protein Csa_1G256780 [Cucumis sativus][more]
gi|659086278|ref|XP_008443848.1|4.6e-6497.66PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo][more]
gi|700210074|gb|KGN65170.1|1.4e-4175.78hypothetical protein Csa_1G256785 [Cucumis sativus][more]
gi|1021473654|ref|XP_016200305.1|1.9e-3365.00PREDICTED: uncharacterized protein LOC107641321 [Arachis ipaensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17780.1CSPI01G17780.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34807FAMILY NOT NAMEDcoord: 1..128
score: 1.5
NoneNo IPR availablePANTHERPTHR34807:SF3SUBFAMILY NOT NAMEDcoord: 1..128
score: 1.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17780Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G17780Bottle gourd (USVL1VR-Ls)cpilsiB064
CSPI01G17780Bottle gourd (USVL1VR-Ls)cpilsiB075
CSPI01G17780Melon (DHL92) v3.6.1cpimedB051
CSPI01G17780Melon (DHL92) v3.6.1cpimedB067
CSPI01G17780Melon (DHL92) v3.6.1cpimedB072
CSPI01G17780Cucumber (Gy14) v2cgybcpiB002
CSPI01G17780Cucumber (Gy14) v2cgybcpiB007
CSPI01G17780Cucumber (Gy14) v2cgybcpiB050
CSPI01G17780Cucumber (Gy14) v2cgybcpiB162
CSPI01G17780Silver-seed gourdcarcpiB0138
CSPI01G17780Silver-seed gourdcarcpiB0539
CSPI01G17780Cucumber (Chinese Long) v3cpicucB000
CSPI01G17780Cucumber (Chinese Long) v3cpicucB020
CSPI01G17780Cucumber (Chinese Long) v3cpicucB040
CSPI01G17780Watermelon (97103) v2cpiwmbB068
CSPI01G17780Watermelon (97103) v2cpiwmbB067
CSPI01G17780Wax gourdcpiwgoB006
CSPI01G17780Wax gourdcpiwgoB076
CSPI01G17780Wax gourdcpiwgoB099
CSPI01G17780Wild cucumber (PI 183967)cpicpiB006
CSPI01G17780Wild cucumber (PI 183967)cpicpiB027
CSPI01G17780Cucumber (Gy14) v1cgycpiB100
CSPI01G17780Cucumber (Gy14) v1cgycpiB096
CSPI01G17780Cucumber (Gy14) v1cgycpiB407
CSPI01G17780Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17780Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17780Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17780Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17780Cucumber (Chinese Long) v2cpicuB004
CSPI01G17780Cucumber (Chinese Long) v2cpicuB014
CSPI01G17780Cucumber (Chinese Long) v2cpicuB035
CSPI01G17780Melon (DHL92) v3.5.1cpimeB057
CSPI01G17780Melon (DHL92) v3.5.1cpimeB075
CSPI01G17780Watermelon (Charleston Gray)cpiwcgB070
CSPI01G17780Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17780Watermelon (97103) v1cpiwmB086
CSPI01G17780Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17780Cucurbita pepo (Zucchini)cpecpiB640