CSPI01G16910 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16910
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pol polyprotein
Location	Chr1 : 12720332 .. 12720927 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTATATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGACACTCCCATTTTATCTGAGGAAAAACTGACAAAGAAAAGCAACTTGTAGTTGATACATGGAAACATGCAGAATATATTTGCAAGAATTACATTTTGAATGGGTTAGACAACACACTATACAATTTGTATAGTAGTGTTGATTCGGCCAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAAATTAAAGTTGTTAGTGCAAAGAAACTTATCGCTCGAAAATTTCTAGATTACAAAATGGTAGACGCCAAAACTGTAATCAGTCAGATTCAAGAAATTCAGGTAATTCTACATAATATACATGTTGAGAATATGATTTTGAGTGAGTCTTTTCAGGTAGCATCAATAATTGAAAAATTGTCACCCTCATGTAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAACTTGAGGAACTTGTGGTCCAACTTGGGATTAAAGAGAATAATCGAAAGGCGGAAAAGTGTGTCGCCACGTGCCCGAGACGACGCGGAGCGGCTGATGTCCTCAAAAGAGCTAGTTTTAAAATAAAATAG

mRNA sequence

ATGTTGTTATATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGACACTCCCATTTTATCTGAGGAAAAACTGACAAAGAAAAGCAACTTTAGTGTTGATTCGGCCAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAAATTAAAGTTGTTAGTGCAAAGAAACTTATCGCTCGAAAATTTCTAGATTACAAAATGGTAGACGCCAAAACTGTAATCAGTCAGATTCAAGAAATTCAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAACTTGAGGAACTTGTGGTCCAACTTGGGATTAAAGAGAATAATCGAAAGGCGGAAAAGTGTGTCGCCACGTGCCCGAGACGACGCGGAGCGGCTGATGTCCTCAAAAGAGCTAGTTTTAAAATAAAATAG

Coding sequence (CDS)

ATGTTGTTATATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGACACTCCCATTTTATCTGAGGAAAAACTGACAAAGAAAAGCAACTTTAGTGTTGATTCGGCCAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAAATTAAAGTTGTTAGTGCAAAGAAACTTATCGCTCGAAAATTTCTAGATTACAAAATGGTAGACGCCAAAACTGTAATCAGTCAGATTCAAGAAATTCAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAACTTGAGGAACTTGTGGTCCAACTTGGGATTAAAGAGAATAATCGAAAGGCGGAAAAGTGTGTCGCCACGTGCCCGAGACGACGCGGAGCGGCTGATGTCCTCAAAAGAGCTAGTTTTAAAATAAAATAG

Homology

[Close]

BLAST of CSPI01G16910 vs. TrEMBL
Match: A5CBN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 75/175 (42.86%), Postives = 95/175 (54.29%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEKLTKK----------SNF------------------ 60
           ML YLTTLNLA+FL E+ PIL E +  K+          S+F                  
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEIQ--------- 116
            S+ +AK LW SL+KKYK +    KK I  KFLD+KM+D+KTVISQ+QE+Q         
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

[Close]

BLAST of CSPI01G16910 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEK----------LTKKSNF------------------ 60
           ML YLTTLNLA+FLTED P L E++            K S+F                  
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 116
               +AK LW SL++KYK +   AKK +  +FLDYKMVD+KTV+SQ+QE+          
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

[Close]

BLAST of CSPI01G16910 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEK----------LTKKSNF------------------ 60
           ML YLTTLNLA+FLTED P L E++            K S+F                  
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLTDSLYNVY 115

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 116
               +AK LW SL++KYK +   AKK +  +FLDYKMVD+KTV+SQ+QE+          
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAD 175

[Close]

BLAST of CSPI01G16910 vs. TrEMBL
Match: A5B994_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-19
Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFSVDS------------------------ 60
           ML Y+TTLNLA+FL E+ PIL E +  K+   +VD+                        
Sbjct: 33  MLFYVTTLNLARFLHEECPILEEGETNKEKVAAVDAWKHSDFLCRNYVLNGLDNTLYNVY 92

Query: 61  -----AKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 116
                A+ LW SL+KKYK +    KK I  KFLD+KM+D+KTV SQ+QE+          
Sbjct: 93  CSLKTAEELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVRSQVQELQVILHEIHSE 152

[Close]

BLAST of CSPI01G16910 vs. TrEMBL
Match: A5ACV5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003036 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 77/198 (38.89%), Postives = 97/198 (48.99%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEKLTKK----------SNF------------------ 60
           ML YLTTLNLAK L +D P L E +  K+          S+F                  
Sbjct: 1   MLFYLTTLNLAKVLHKDAPTLKEGETDKQIVAAIEAWKHSDFLCKNYILNGLDNMMYNVY 60

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEIQ--------- 120
             V + K LW SLEKKYK + V  KK I  +FLDYKMVD+KTV SQ+QE+Q         
Sbjct: 61  SQVKTTKELWESLEKKYKTEDVGMKKFIVGRFLDYKMVDSKTVTSQVQELQIILHELHAE 120

Query: 121 ----------------------DFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCVATC 139
                                 DFKNYLKHKRKE+ L++L+V+L I+++NR  E  V   
Sbjct: 121 KMELSESFQVAAIVEKLPLSWKDFKNYLKHKRKEMGLKDLIVRLKIEKDNRFFENKVGKH 180

[Close]

BLAST of CSPI01G16910 vs. NCBI nr
Match: gi|659134194|ref|XP_008467076.1| (PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 91/159 (57.23%), Postives = 100/159 (62.89%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF---------------------------- 60
           ML YLTTLNLAKFL ED PIL E +  K+                               
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEY 60

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEIQ--------- 118
            SVDSAKNLWTSLE KYK +V  AKK I  KFLDYKMVD+KTVISQ+QEIQ         
Sbjct: 61  SSVDSAKNLWTSLENKYKTEVAGAKKFIVGKFLDYKMVDSKTVISQVQEIQVASIIEKLP 120

[Close]

BLAST of CSPI01G16910 vs. NCBI nr
Match: gi|659095141|ref|XP_008448421.1| (PREDICTED: uncharacterized protein LOC103490626 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-22
Identity = 68/116 (58.62%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 32  FSVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 91
           +SVDS KNLWTSLEK YK +V  AKK I  KFLDYKMVD+KTVISQ QEI          
Sbjct: 11  YSVDSLKNLWTSLEK-YKTEVSGAKKFIVGKFLDYKMVDSKTVISQFQEIQVILHDIHVD 70

Query: 92  ---------------------QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKC 117
                                +DFKNYLKHK +EIKLEELVV+LGIKENNRK EKC
Sbjct: 71  NMTLSESFQVASIIENLPPSWKDFKNYLKHKNREIKLEELVVRLGIKENNRKVEKC 125

[Close]

BLAST of CSPI01G16910 vs. NCBI nr
Match: gi|147828230|emb|CAN66576.1| (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 6.8e-21
Identity = 75/175 (42.86%), Postives = 95/175 (54.29%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEKLTKK----------SNF------------------ 60
           ML YLTTLNLA+FL E+ PIL E +  K+          S+F                  
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEIQ--------- 116
            S+ +AK LW SL+KKYK +    KK I  KFLD+KM+D+KTVISQ+QE+Q         
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

[Close]

BLAST of CSPI01G16910 vs. NCBI nr
Match: gi|147818102|emb|CAN73567.1| (hypothetical protein VITISV_003451 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEK----------LTKKSNF------------------ 60
           ML YLTTLNLA+FLTED P L E++            K S+F                  
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLTDSLYNVY 115

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 116
               +AK LW SL++KYK +   AKK +  +FLDYKMVD+KTV+SQ+QE+          
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAD 175

[Close]

BLAST of CSPI01G16910 vs. NCBI nr
Match: gi|147804664|emb|CAN66637.1| (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 1


Query: 1   MLLYLTTLNLAKFLTEDTPILSEEK----------LTKKSNF------------------ 60
           ML YLTTLNLA+FLTED P L E++            K S+F                  
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  -SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI---------- 116
               +AK LW SL++KYK +   AKK +  +FLDYKMVD+KTV+SQ+QE+          
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

The following BLAST results are available for this feature:

BLAST of CSPI01G16910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G16910 vs. TrEMBL


Match Name	E-value	Identity	Description
A5CBN2_VITVI	4.7e-21	42.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1	[more]
A5AEN5_VITVI	1.5e-19	39.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1	[more]
A5AMN2_VITVI	1.5e-19	39.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A5B994_VITVI	7.5e-19	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1	[more]
A5ACV5_VITVI	1.4e-17	38.89	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003036 PE=4 SV=1	[more]

BLAST of CSPI01G16910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G16910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134194\|ref\|XP_008467076.1\|	1.7e-32	57.23	PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo]	[more]
gi\|659095141\|ref\|XP_008448421.1\|	8.0e-22	58.62	PREDICTED: uncharacterized protein LOC103490626 [Cucumis melo]	[more]
gi\|147828230\|emb\|CAN66576.1\|	6.8e-21	42.86	hypothetical protein VITISV_016964 [Vitis vinifera]	[more]
gi\|147818102\|emb\|CAN73567.1\|	2.2e-19	39.43	hypothetical protein VITISV_003451 [Vitis vinifera]	[more]
gi\|147804664\|emb\|CAN66637.1\|	2.2e-19	39.43	hypothetical protein VITISV_011340 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16910.1	CSPI01G16910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16910	Cucurbita pepo (Zucchini)	cpecpiB351
CSPI01G16910	Cucurbita pepo (Zucchini)	cpecpiB368
CSPI01G16910	Cucurbita pepo (Zucchini)	cpecpiB640
CSPI01G16910	Cucurbita pepo (Zucchini)	cpecpiB663
CSPI01G16910	Bottle gourd (USVL1VR-Ls)	cpilsiB078
CSPI01G16910	Melon (DHL92) v3.6.1	cpimedB044
CSPI01G16910	Cucumber (Gy14) v2	cgybcpiB006
CSPI01G16910	Silver-seed gourd	carcpiB0040
CSPI01G16910	Silver-seed gourd	carcpiB0138
CSPI01G16910	Silver-seed gourd	carcpiB0142
CSPI01G16910	Cucumber (Chinese Long) v3	cpicucB005
CSPI01G16910	Watermelon (97103) v2	cpiwmbB074
CSPI01G16910	Wax gourd	cpiwgoB089
CSPI01G16910	Cucurbita maxima (Rimu)	cmacpiB056
CSPI01G16910	Cucurbita maxima (Rimu)	cmacpiB094
CSPI01G16910	Cucurbita moschata (Rifu)	cmocpiB047
CSPI01G16910	Cucurbita moschata (Rifu)	cmocpiB085
CSPI01G16910	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16910	Melon (DHL92) v3.5.1	cpimeB050
CSPI01G16910	Watermelon (Charleston Gray)	cpiwcgB079
CSPI01G16910	Watermelon (97103) v1	cpiwmB092