CSPI01G16530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94, putative
Location	Chr1 : 12071559 .. 12072311 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTGAATTTATAGCCTTAGACAAGGCTAGAGAAGAAGCAGAATGGCTTCGAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTATACATAGTGATAGCCAAGCAACTATTGGAAGGACACGAAATATTATGTATAATGGTAAGTCTCGACATATACGACAGAGACATAATACAATCAGGCAACTACTCTCTAGTGGAATTATCACAATTGACTCTGTGAGGTCAAAAAATAATATAGCGGATCCACTTACTAAAGGCTAATTAGGGAGTTGGTTGAAAATTCATAAAAAAGAATGAGATTAAAGCCTATAATATGAAGTTATCCAGAGAGGCAACCCAACCTAGTTGACTGGAGATCCCAAGATCTAGGTTTAACGGGAAAATCGATCTATAAATAATACAACAAGCACTGCGTTAAAAGATTTTCCCATTTTACGAATGATGAGGTAGTGCCAGTATAGCTTTAGGGTAAGCTTTATGCTTTTAATGATTTTTGTTAGTGATATTTATTAACAAAAGAACATATACGATGTTTTGAACATGAATCACCTATGTGAGTGTGAAGGGGTCGCTTCTGTGAGAATTTTTAAGGCAACATTCTCTAAAACACTCATGAGACCAGGCGGTGTTCAAGGCCAAAACGAACACAATATAATGAGAAGTTGTGTGATATCTATTGTTTTAGTTTACTCTAGGGCGGTTGACAGTTCAAGACATCATGTTCACTGA

mRNA sequence

ATGAAATCTGAATTTATAGCCTTAGACAAGGCTAGAGAAGAAGCAGAATGGCTTCGAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTATACATAGTGATAGCCAAGCAACTATTGGAAGGACACGAAATATTATGTATAATGGGGTCGCTTCTGTGAGAATTTTTAAGGCAACATTCTCTAAAACACTCATGAGACCAGGCGGTGTTCAAGGCCAAAACGAACACAATATAATGAGAAGTTGTGTGATATCTATTGTTTTAGTTTACTCTAGGGCGGTTGACAGTTCAAGACATCATGTTCACTGA

Coding sequence (CDS)

ATGAAATCTGAATTTATAGCCTTAGACAAGGCTAGAGAAGAAGCAGAATGGCTTCGAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTATACATAGTGATAGCCAAGCAACTATTGGAAGGACACGAAATATTATGTATAATGGGGTCGCTTCTGTGAGAATTTTTAAGGCAACATTCTCTAAAACACTCATGAGACCAGGCGGTGTTCAAGGCCAAAACGAACACAATATAATGAGAAGTTGTGTGATATCTATTGTTTTAGTTTACTCTAGGGCGGTTGACAGTTCAAGACATCATGTTCACTGA

Homology

[Close]

BLAST of CSPI01G16530 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.4e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 1164 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1218

[Close]

BLAST of CSPI01G16530 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.4e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 1203 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1257

[Close]

BLAST of CSPI01G16530 vs. TrEMBL
Match: A5AT67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016069 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.4e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 983  MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1037

[Close]

BLAST of CSPI01G16530 vs. TrEMBL
Match: A5C4N5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015538 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
           M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR  + MYNG
Sbjct: 200 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAXSNMYNG 254

[Close]

BLAST of CSPI01G16530 vs. TrEMBL
Match: Q6L408_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_44t00009 PE=4 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-16
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+S+FIALDKA +EAEWL+NFLEDIP W KPV  ICIH DSQA IGR R++MYNG
Sbjct: 1149 MESKFIALDKAGKEAEWLQNFLEDIPFWPKPVGPICIHCDSQAAIGRARSVMYNG 1203

[Close]

BLAST of CSPI01G16530 vs. NCBI nr
Match: gi|147809962|emb|CAN76029.1| (hypothetical protein VITISV_016069 [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 983  MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1037

[Close]

BLAST of CSPI01G16530 vs. NCBI nr
Match: gi|147804664|emb|CAN66637.1| (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 1203 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1257

[Close]

BLAST of CSPI01G16530 vs. NCBI nr
Match: gi|147818102|emb|CAN73567.1| (hypothetical protein VITISV_003451 [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1    MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
            M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR ++ MYNG
Sbjct: 1164 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNG 1218

[Close]

BLAST of CSPI01G16530 vs. NCBI nr
Match: gi|147833071|emb|CAN62076.1| (hypothetical protein VITISV_015538 [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG 56
           M+SEFIALDK  EEAEWLR+FLEDIP WSKPVP ICIH DSQ+ IGR  + MYNG
Sbjct: 200 MESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAXSNMYNG 254

[Close]

BLAST of CSPI01G16530 vs. NCBI nr
Match: gi|703151047|ref|XP_010110016.1| (hypothetical protein L484_021905 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 1  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNGV 57
          MK+EF+ALDK  EEAEWLR FLEDIP+W K VPAICIHSD+Q+ IGR  N MY+G+
Sbjct: 1  MKAEFVALDKCGEEAEWLRYFLEDIPDWPKHVPAICIHSDNQSAIGRAHNTMYSGL 56

The following BLAST results are available for this feature:

BLAST of CSPI01G16530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G16530 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AMN2_VITVI	9.4e-17	76.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A5AEN5_VITVI	9.4e-17	76.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1	[more]
A5AT67_VITVI	9.4e-17	76.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016069 PE=4 SV=1	[more]
A5C4N5_VITVI	1.6e-16	76.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015538 PE=4 SV=1	[more]
Q6L408_SOLDE	6.1e-16	74.55	Polyprotein, putative OS=Solanum demissum GN=SDM1_44t00009 PE=4 SV=2	[more]

BLAST of CSPI01G16530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G16530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147809962\|emb\|CAN76029.1\|	1.4e-16	76.36	hypothetical protein VITISV_016069 [Vitis vinifera]	[more]
gi\|147804664\|emb\|CAN66637.1\|	1.4e-16	76.36	hypothetical protein VITISV_011340 [Vitis vinifera]	[more]
gi\|147818102\|emb\|CAN73567.1\|	1.4e-16	76.36	hypothetical protein VITISV_003451 [Vitis vinifera]	[more]
gi\|147833071\|emb\|CAN62076.1\|	2.3e-16	76.36	hypothetical protein VITISV_015538 [Vitis vinifera]	[more]
gi\|703151047\|ref\|XP_010110016.1\|	8.8e-16	71.43	hypothetical protein L484_021905 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16530.1	CSPI01G16530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16530	Cucumber (Gy14) v1	cgycpiB373
CSPI01G16530	Cucurbita maxima (Rimu)	cmacpiB053
CSPI01G16530	Cucurbita maxima (Rimu)	cmacpiB089
CSPI01G16530	Cucurbita moschata (Rifu)	cmocpiB044
CSPI01G16530	Cucurbita moschata (Rifu)	cmocpiB081
CSPI01G16530	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16530	Melon (DHL92) v3.5.1	cpimeB048
CSPI01G16530	Watermelon (Charleston Gray)	cpiwcgB086
CSPI01G16530	Watermelon (97103) v1	cpiwmB102
CSPI01G16530	Cucurbita pepo (Zucchini)	cpecpiB365
CSPI01G16530	Cucurbita pepo (Zucchini)	cpecpiB660
CSPI01G16530	Bottle gourd (USVL1VR-Ls)	cpilsiB074
CSPI01G16530	Melon (DHL92) v3.6.1	cpimedB042
CSPI01G16530	Cucumber (Gy14) v2	cgybcpiB008
CSPI01G16530	Silver-seed gourd	carcpiB0141
CSPI01G16530	Cucumber (Chinese Long) v3	cpicucB011
CSPI01G16530	Watermelon (97103) v2	cpiwmbB082
CSPI01G16530	Wax gourd	cpiwgoB085