CSPI01G15840 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15840
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 11349600 .. 11349872 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCAGTCCTTCTGGTGGTATTCTTATTTTATGGAGACCTCCTGAACACACAGTTCATGAAGTTGTTCATGGTATCTATACTCTATCTATCCATATTGAATTAGCTGATGGTTTCTCCTTCTGGTGCTCTCCGGTATATGGTCCCTATGACGATTGTTTTCATCTGGATTTTTGGAATGAACTTCATGATGTGGCTGGTTTGGGAGGAGAAAACTGGATTATTGGTGGGGACTTCAAAATGTTACTCACTGGTCTTGGGAAAATCTCA

mRNA sequence

ATGCAATTCAGTCCTTCTGGTGGTATTCTTATTTTATGGAGACCTCCTGAACACACAGTTCATGAAGTTGTTCATGGTATCTATACTCTATCTATCCATATTGAATTAGCTGATGGTTTCTCCTTCTGGTGCTCTCCGGTATATGGTCCCTATGACGATTGTTTTCATCTGGATTTTTGGAATGAACTTCATGATGTGGCTGGTTTGGGAGGAGAAAACTGGATTATTGGTGGGGACTTCAAAATGTTACTCACTGGTCTTGGGAAAATCTCA

Coding sequence (CDS)

ATGCAATTCAGTCCTTCTGGTGGTATTCTTATTTTATGGAGACCTCCTGAACACACAGTTCATGAAGTTGTTCATGGTATCTATACTCTATCTATCCATATTGAATTAGCTGATGGTTTCTCCTTCTGGTGCTCTCCGGTATATGGTCCCTATGACGATTGTTTTCATCTGGATTTTTGGAATGAACTTCATGATGTGGCTGGTTTGGGAGGAGAAAACTGGATTATTGGTGGGGACTTCAAAATGTTACTCACTGGTCTTGGGAAAATCTCA

Homology

[Close]

BLAST of CSPI01G15840 vs. TrEMBL
Match: A0A0A0LW63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-47
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 1   MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW 60
           MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW
Sbjct: 169 MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW 228

Query: 61  NELHDVAGLGGENWIIGGDFKMLLTG 87
           NELHDVAGLGGENWIIGGDFKMLL G
Sbjct: 229 NELHDVAGLGGENWIIGGDFKMLLAG 254

[Close]

BLAST of CSPI01G15840 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   + +  EVV G +++SI   L    S W S VYGP       DFW EL D
Sbjct: 730 SGGILIIWDAKKLSREEVVLGSFSVSIKFALNGCESLWLSAVYGPNISALRKDFWVELSD 789

Query: 66  VAGLGGENWIIGGDFKML 84
           +AGL    W +GGDF ++
Sbjct: 790 IAGLASPRWCVGGDFNVI 807

[Close]

BLAST of CSPI01G15840 vs. TrEMBL
Match: A5C364_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035898 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   +    EVV G +++SI   L     FW S VYGP +     DFW EL D
Sbjct: 575 SGGILIIWDSKKLRREEVVLGSFSVSIKFALDGCEPFWLSAVYGPSNSALRKDFWVELSD 634

Query: 66  VAGLGGENWIIGGDFKMLLTGLGKI 91
           + GL    W +GGDF ++     K+
Sbjct: 635 IFGLSSXRWCVGGDFNVIXRSSKKL 659

[Close]

BLAST of CSPI01G15840 vs. TrEMBL
Match: A5AK27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   +    EVV G +++SI   +    S W S VYGP +     DFW EL D
Sbjct: 823 SGGILIIWDSIKMRREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNSALRKDFWVELSD 882

Query: 66  VAGLGGENWIIGGDFKML 84
           +AGL    W +GGDF ++
Sbjct: 883 IAGLSHPRWCVGGDFNVI 900

[Close]

BLAST of CSPI01G15840 vs. TrEMBL
Match: A5BJC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   +    EVV G +++SI   L    S W S VYGP +     DFW EL D
Sbjct: 819 SGGILIIWEAKKLCREEVVLGSFSVSIKFALDGCESLWLSAVYGPNNSTLRKDFWVELSD 878

Query: 66  VAGLGGENWIIGGDFKML 84
           + GL    W +GGDF ++
Sbjct: 879 IVGLAYPRWCVGGDFNVI 896

[Close]

BLAST of CSPI01G15840 vs. NCBI nr
Match: gi|700209946|gb|KGN65042.1| (hypothetical protein Csa_1G181550 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-47
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 1   MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW 60
           MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW
Sbjct: 169 MQFSPSGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFW 228

Query: 61  NELHDVAGLGGENWIIGGDFKMLLTG 87
           NELHDVAGLGGENWIIGGDFKMLL G
Sbjct: 229 NELHDVAGLGGENWIIGGDFKMLLAG 254

[Close]

BLAST of CSPI01G15840 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 9.2e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   + +  EVV G +++SI   L    S W S VYGP       DFW EL D
Sbjct: 730 SGGILIIWDAKKLSREEVVLGSFSVSIKFALNGCESLWLSAVYGPNISALRKDFWVELSD 789

Query: 66  VAGLGGENWIIGGDFKML 84
           +AGL    W +GGDF ++
Sbjct: 790 IAGLASPRWCVGGDFNVI 807

[Close]

BLAST of CSPI01G15840 vs. NCBI nr
Match: gi|731440685|ref|XP_010647647.1| (PREDICTED: uncharacterized protein LOC104878737, partial [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   + +  EVV G +++SI   L    S W S VYGP       DFW EL D
Sbjct: 67  SGGILIIWDAKKLSREEVVLGSFSVSIKFALNGYESLWLSAVYGPNISALKKDFWVELSD 126

Query: 66  VAGLGGENWIIGGDFKML 84
           +AGL    W +GGDF ++
Sbjct: 127 IAGLASPRWCVGGDFNVI 144

[Close]

BLAST of CSPI01G15840 vs. NCBI nr
Match: gi|147855269|emb|CAN79624.1| (hypothetical protein VITISV_035898 [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   +    EVV G +++SI   L     FW S VYGP +     DFW EL D
Sbjct: 575 SGGILIIWDSKKLRREEVVLGSFSVSIKFALDGCEPFWLSAVYGPSNSALRKDFWVELSD 634

Query: 66  VAGLGGENWIIGGDFKMLLTGLGKI 91
           + GL    W +GGDF ++     K+
Sbjct: 635 IFGLSSXRWCVGGDFNVIXRSSKKL 659

[Close]

BLAST of CSPI01G15840 vs. NCBI nr
Match: gi|147780533|emb|CAN69126.1| (hypothetical protein VITISV_008195 [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 6   SGGILILWRPPEHTVHEVVHGIYTLSIHIELADGFSFWCSPVYGPYDDCFHLDFWNELHD 65
           SGGILI+W   +    EVV G +++SI   +    S W S VYGP +     DFW EL D
Sbjct: 823 SGGILIIWDSIKMRREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNSALRKDFWVELSD 882

Query: 66  VAGLGGENWIIGGDFKML 84
           +AGL    W +GGDF ++
Sbjct: 883 IAGLSHPRWCVGGDFNVI 900

The following BLAST results are available for this feature:

BLAST of CSPI01G15840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW63_CUCSA	3.3e-47	98.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1	[more]
A5BCI7_VITVI	6.4e-11	44.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1	[more]
A5C364_VITVI	1.1e-10	41.18	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035898 PE=4 SV=1	[more]
A5AK27_VITVI	1.4e-10	43.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1	[more]
A5BJC9_VITVI	1.9e-10	43.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1	[more]

BLAST of CSPI01G15840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209946\|gb\|KGN65042.1\|	4.7e-47	98.84	hypothetical protein Csa_1G181550 [Cucumis sativus]	[more]
gi\|147811389\|emb\|CAN65484.1\|	9.2e-11	44.87	hypothetical protein VITISV_029474 [Vitis vinifera]	[more]
gi\|731440685\|ref\|XP_010647647.1\|	1.2e-10	44.87	PREDICTED: uncharacterized protein LOC104878737, partial [Vitis vinifera]	[more]
gi\|147855269\|emb\|CAN79624.1\|	1.6e-10	41.18	hypothetical protein VITISV_035898 [Vitis vinifera]	[more]
gi\|147780533\|emb\|CAN69126.1\|	2.1e-10	43.59	hypothetical protein VITISV_008195 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15840.1	CSPI01G15840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 7..80 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15840	Csa1G181550	Cucumber (Chinese Long) v2	cpicuB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15840	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15840	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15840	Cucurbita pepo (Zucchini)	cpecpiB511
CSPI01G15840	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15840	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15840	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15840	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15840	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G15840	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15840	Silver-seed gourd	carcpiB0055
CSPI01G15840	Silver-seed gourd	carcpiB0435
CSPI01G15840	Silver-seed gourd	carcpiB1073
CSPI01G15840	Silver-seed gourd	carcpiB1074
CSPI01G15840	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15840	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15840	Cucumber (Chinese Long) v3	cpicucB060
CSPI01G15840	Watermelon (97103) v2	cpiwmbB005
CSPI01G15840	Watermelon (97103) v2	cpiwmbB009
CSPI01G15840	Wax gourd	cpiwgoB036
CSPI01G15840	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15840	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15840	Cucumber (Gy14) v1	cgycpiB286
CSPI01G15840	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15840	Cucurbita maxima (Rimu)	cmacpiB224
CSPI01G15840	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15840	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G15840	Cucurbita moschata (Rifu)	cmocpiB211
CSPI01G15840	Cucurbita moschata (Rifu)	cmocpiB385
CSPI01G15840	Melon (DHL92) v3.5.1	cpimeB016
CSPI01G15840	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15840	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15840	Watermelon (97103) v1	cpiwmB050
CSPI01G15840	Watermelon (97103) v1	cpiwmB054