CSPI01G15420 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGACATGAAACGAATTTGGTTTCTTAATCCCATAAATTTAATTGCAAGTGTCCAAACATAATGCTAAACCAAACCCATCGGCAAGCACTGGTGTGTATCTTATATCTTTTGTTCACCATCACCATCTGCCTCAAGGCAGTTTACAATTACCCTAGTTTATGTGTAACTCTTCATTTGGTAGCCAACAATGGAGGCTGTAGAAGAGAGCCACAACCCTAAAATGGATCCTCCCTGTTCCTCTTCCGCCTGCAATCCTCCTGAACCTCCCCTCTCCAAGAATGCCCGGAAGAAGCTTCTGAAGCAACAACGATACGAAGCGAAGAAAGCGGACAAGAAACTTCAGGCTAAAGAGCAGAAGAAGAAAGACATCGAGCGCAAACGGAAGGAATGGGAAGAGAAACTGGCCAGTGTTACGGAGGAGGAAAGAGCCAAACTGATCGAGTCTCGGAGAAATCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGACAGGGAGAAGAAAATTGAGAGACTCAGCACCGCCAGAGATTATGGCCAAAATATTGTCATAGACCTTGAATTTTCTCACCTCATGACCCCTTGGGAGATTCACAGTCTTGTTCAGCAGGTCTTTTTTTCTTGTTACTCACACTTCACTTGGTTGATTAACTATTTCTGGTGCGAATCGAATACTTTTTGATACTATATATATGTATTTTTAATTTTTTACTTATAAAATGCTGTCTATATTTAAGAGGTTTGTTAAATGTTTCTGGTAGATGGAAATGGAATGAAGGGCTTCTTCTATGGTTCCCTTTTAGAAGTGAAATTGGTTGTTATTCTTGGAAAAGCACCAAATGCTGCCTGAGATAACACAAACGCACGACTTGAACTCCTCCTCCCATCATTTCAATCTCCCAGCTTAATTACTTACGAAATTCGATTTTCTTATTTTTATTTCCCACTTTTGTAGTGTTCACCCATCATTTTTTGTCTCTTTTTGCAAGTAATAGAACATCCTTTCAGTATCTAAAAAAGATGCAACTGCGTTGGATTCTCCTGAAATCTTGTTTCTTGCAGTTGAATGCATCAAACTACCCACAATTTGGTTATATAGTATGTCGTTCTTCTTTCTTCTTTCCTTCATGGTCTTTATTTAGTTCCAAGCCAGACTCAGTTGGAGTACATATAGGGTTGCAATTCTTCATTTGAATACTAGTAAAATTTCTTGCTACGAAGATTCGAAACTCTAAGGAGCTCCTTGTACACAACCCTTATAAAAAATTTCTTTCTCCTTTTCCTCTTCGTCTATGTATGACAAAATACCATAACAACCTCCTTAACTAAACTAATGTACTTTTAGTATCCAAATAAAAACCTAATGGCATTCCTATCACCAAGCTCTTGGAAGATGTAAAGTCTATTACTTTTCAGAAATTTGTATGCACGATGCTAATCTCCAGTCTCATAACATAATGGTTTCAGTTGAAGAATTGGTTAAATTTTTTGTCTTGGATATGCATTCAACCAAAGGAAGCTTCCTTATAATTTCCTTAGCGTGTTGGATAAATTCCCCAAACATTTTGACGATGAATGAAAGGTTTCTATGGATCATCTATCAAGTATTCAAGTGGGATATTGCATACTTTGATCTGAAAAATACCTGCTTTGCCTACAGCTTTTGGACACCACTTCTAGTCTGCAAGATACCCTACTGACTTTCTAATATGGTGCATTTGCAGATGCTAAAAATGTTAATGGAGTCCACTTATCAATTAAATGAAATGGAAACTGACCAATATAATGATATACATTTGCAGGATAGTGGGATATCCTACTGACCAGTTGGAGCAAGCATTATTCTTTTTTTTTTTCCTTTTATATTCGTGAGTGTTCGGGCTAGCACCCGCACACCTCAACTAATTATACAGAACCCACCTGATCTTACAACATTTGGGTGTCAAGGAAACTTGTTGGAAATTAATTCTTAAGTAGATGACCACCATGGGTTGAATCCATGACCTCTTCGTTAGTTATTGAGACTATGTCTTCTTTTATACCACTAGGCTAACCCATGATGGCTAACAATCATTATTCGTTTGATCTATCTCACATTGAGGAGTAGCTTAAGCTTCTACTGTGGGATTCTTACCTTCTGTTTCCAACATTAGAAGTTTGTATGTATAAGAAACAATCATCGACTTGTAATTACAAAAGAATAGAAAACTATGTACCGAAGGAATAACAAAAAACACTTCAATTGGGGCATAAGAGAAGTGAGGTTATAGGAGATAAAGAGAAGGTTAAGTTTTACACTAACAGAGCATTAAAGCAATATGTATGATTTACATCAATGTAAATTTTTTAACCTTGTTTCACCGTTTTTAGGGGGAAAAAACCCTTAAAAAATGATGAAAATGAAGTTAATCTTCCCAAAAGAGTTTCCTATTTTTTATTTTTTCTTCAAATAATATTTACTTATTCATTTTAATGGATTTTATGAGGGACCATTAATGTATTTGTTCATATTCATCCTTGGTGTTCTTTAAAATATAGGTCGTTCTTGCCCTTAGATGCAGAATTCGCATACAAATGATTTTCCATAGTAAAGCCACCAACAGATTTGAAAATGTGATCTCTGGGGGAAGTGTTATTTATCCTTGATGTTGAATTACTTATCCCCTGGTCTATTAGTGTCACATACTTCCAAGATTGACGTGTGAGATTTCAATGTTTACTCCATCTCTATTGGTTCCGTGATCCACCTCTCCATACCTACTAGCCACCTTGATCTTCAACCAATCAAATATTTGACTAATCTCACCCTGTCAAAAGACTCGAGAACCATTGGAAGATGGAGACAAGAGAATAAAGAAAAAGAGGAGAGAGCATCGTCGGAGTCACCCTTTTCAAAATATGAACTTTTTATGTTTTTAATAAAAGCATAAATTTATAGGTTCGAATTTAACTCTGAATCTTACTATTATACAAGATTTCTAATGTGAGAATATAAGTTTATATTGCACCTAAATGCACGGTACTCCTACAAAATGTATGATGGGCAGTATTTAATTGGAATAGACTATGATGACTAAGATGGAATATTTTTTGGAGTAGCATGACACATTTTACTGAGTACTTTTCCTACATTAGTTAGTTATCATGCCAAGGCATTCTAAAATACGTCATCATCCCTATGTCATAGCATTTCATAGCTGATTTATTCTTGGTTCACATTTAGTTATAGTCAGGATGCTGCTTTTTGGTGTGATGTTGAATTGGATCTTTTTCAATTTACAAGCGATTCATTTCTGAAGACTACTGAAAACTTTGACATTTTATCCTCATGCAGCATTCTTCTTTTGTATGTTAATTCTCAAATTAATTTAAGTAGTAATGATTCAATGATCTTTTGGAAACAGCAAGTTTTCTGAGTATCTTTATTGGGTAAAAACCTGCAGATAATGTATTGTTATGCTGTGAATGGAAGATGTCCTTCTCCTTGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGATAAATGGATCATTGAGAAGGAATGTAGATCATACATAGATGCTTTGCAAGAGCAGAAGGAAAATCTGGTATATCTTACAGCAGACTCAGAAACTGTGCTTGATGACCTCGATCTAAAGAAAATTTATATCGTTGGTGGGTTAGTTGATCGTAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGAAATTCAAACAGCAAAACTCCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTATATCTTGGTTTTTACATGCTAATTACTTTTATCGACATTTTGGACTTTAAATACTGTCATCCTGAACTTACAAAATGGGAGATTAAGAATACAAGTGTGCTCCAATCTTGTAACTACTTATTTTTGTAGAAAAATGAAAGAACGTAGAAAGGCATACAAGAAAAGGAATATCTAAAAAAGGAGCCTCATTAAAAGCTACAAAATAGAGAACTCAAACCAACCAGAATAAGACCCAACTGACAATTAGAAAACTCTTGTGCGCAAAGAGGCATTGAATTTAGCAACTTCCCAAATCTCTACAAAATAGAGAACTCAAACCAACCAGAATTAAGATGCTTTAGACAAAATGCATGAATGCAGCACTAACAAAAGGGAAAAGAATCCCAAGTATCAACTTTTCTATTTGATGCTGAGCATTGAATTTGACTTCTTTGAGATCTCAACCTTCCAAAAAGGGAAAAATGAAAGGGGGCTCAAGGAAGGGTGAAGGGACGCATGATAGATGGAAGAGGAAAATATATGTAAAGCTCCTGAAGGGGGCTCACAACTCAGTCTTCTCATTTGATGAAGGATGATGAAAACCAAAATAAATATAAATTTCCTGAAAAAAAGGGCAAAACTGAAGCTTGCATAATGTAACCTCCAAACTGCAAAATTGTAAACACGTTGAATGAAGCATGACCCAAAGAGGCTTATCTCTTATGATCCCACCCAAAATTCCTCTTAAAAGTTAATTATTTGATTAATCTCATGAAAACATTTCATGAATAGGGAAAATGGGAAAGCCTAAAAAGCTTATAGACCTATGGGTTTTATATTAGAGACTTTAACCCCCACCATTCGAGACACTCAAACAGGTGAGTGGAGCATACTTGCTCATAATAACCATATGCCACAAAGCGTTGGGCTCGGTACCGTACCCACTGAGGCTTCCTTTTGCAATCTCCAAGTTTCCAACAAGTGAAGTTAAAGCCCCACGATTCAACTTATTAGACAATGTCAAGTACAGTACTCCTTTTCAGACAGATTTATGGATATGGTTTGTCTTCTGCTTTTTATTGTGCAGGGATAGAGCACCCTTTCAATCATTTCAGTTTATCTTATTTAATCTCCGATTGAGAATACTCTGTATGGTTTTCTTCTTTTTGTTGATCAATGAATTTTTCTTTATTTAAAAACAATGCCAATAACAATTAGGAGCTGAGGCATATCTGTAGGCTGAAAAAGTGATTACAAAAGAAAGGCTCTTAACCAAATTTTGTAGGGCTGTAAGTGGGTCAATTAGGCTTGCTTCTTGGCCAAAAAACAAAGTAGCTTAGGATTTTCGGATTTCCGACCTACAAGATTACAAATTGACTTCTTATATTTAATAAGTTATCTTACAATAGTCATTTCCAGGTCCTTACTGTGAACCAAGTCATAGAGATTCTACTCAAGTATTTGGAAACAAGAGACTGGAAGGATTCTTTCTTTGAGGTTGTTCCTCAAAGAAAAAGATGTGGAGGTGATTCAAACAGTGACCATCCAGTAGATGGGGAAGAAAATGGAGATGGAGACAACAAGAACGAGACGAAGAAGACCAAGTGTGATGAAGTATCTTCCAGTGACAATAATTTGTAATGGCTTTGACCAATTGTGAATCAAGTCATAGAGATTCTATTTAAGTATCTTATATTTTTTTGGTAGGGTTATTTCTGTGTTAAAAGGATTCTGATTTTTCATATTTGACTACTAGCAACGTTGAGTGTAAAGGAAGACAATTTTTTGTAAAAGTTGAGTTGAAGAGCCTACTTCTTTACGGATGAAAAATAAATAAATAAATAATGCCTAACTGGGGC ATGGAGGCTGTAGAAGAGAGCCACAACCCTAAAATGGATCCTCCCTGTTCCTCTTCCGCCTGCAATCCTCCTGAACCTCCCCTCTCCAAGAATGCCCGGAAGAAGCTTCTGAAGCAACAACGATACGAAGCGAAGAAAGCGGACAAGAAACTTCAGGCTAAAGAGCAGAAGAAGAAAGACATCGAGCGCAAACGGAAGGAATGGGAAGAGAAACTGGCCAGTGTTACGGAGGAGGAAAGAGCCAAACTGATCGAGTCTCGGAGAAATCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGACAGGGAGAAGAAAATTGAGAGACTCAGCACCGCCAGAGATTATGGCCAAAATATTGTCATAGACCTTGAATTTTCTCACCTCATGACCCCTTGGGAGATTCACAGTCTTGTTCAGCAGATAATGTATTGTTATGCTGTGAATGGAAGATGTCCTTCTCCTTGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGATAAATGGATCATTGAGAAGGAATGTAGATCATACATAGATGCTTTGCAAGAGCAGAAGGAAAATCTGGTATATCTTACAGCAGACTCAGAAACTGTGCTTGATGACCTCGATCTAAAGAAAATTTATATCGTTGGTGGGTTAGTTGATCGTAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGAAATTCAAACAGCAAAACTCCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTCCTTACTGTGAACCAAGTCATAGAGATTCTACTCAAGTATTTGGAAACAAGAGACTGGAAGGATTCTTTCTTTGAGGTTGTTCCTCAAAGAAAAAGATGTGGAGGTGATTCAAACAGTGACCATCCAGTAGATGGGGAAGAAAATGGAGATGGAGACAACAAGAACGAGACGAAGAAGACCAAGTGTGATGAAGTATCTTCCAGTGACAATAATTTGTAA ATGGAGGCTGTAGAAGAGAGCCACAACCCTAAAATGGATCCTCCCTGTTCCTCTTCCGCCTGCAATCCTCCTGAACCTCCCCTCTCCAAGAATGCCCGGAAGAAGCTTCTGAAGCAACAACGATACGAAGCGAAGAAAGCGGACAAGAAACTTCAGGCTAAAGAGCAGAAGAAGAAAGACATCGAGCGCAAACGGAAGGAATGGGAAGAGAAACTGGCCAGTGTTACGGAGGAGGAAAGAGCCAAACTGATCGAGTCTCGGAGAAATCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGACAGGGAGAAGAAAATTGAGAGACTCAGCACCGCCAGAGATTATGGCCAAAATATTGTCATAGACCTTGAATTTTCTCACCTCATGACCCCTTGGGAGATTCACAGTCTTGTTCAGCAGATAATGTATTGTTATGCTGTGAATGGAAGATGTCCTTCTCCTTGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGATAAATGGATCATTGAGAAGGAATGTAGATCATACATAGATGCTTTGCAAGAGCAGAAGGAAAATCTGGTATATCTTACAGCAGACTCAGAAACTGTGCTTGATGACCTCGATCTAAAGAAAATTTATATCGTTGGTGGGTTAGTTGATCGTAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGAAATTCAAACAGCAAAACTCCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTCCTTACTGTGAACCAAGTCATAGAGATTCTACTCAAGTATTTGGAAACAAGAGACTGGAAGGATTCTTTCTTTGAGGTTGTTCCTCAAAGAAAAAGATGTGGAGGTGATTCAAACAGTGACCATCCAGTAGATGGGGAAGAAAATGGAGATGGAGACAACAAGAACGAGACGAAGAAGACCAAGTGTGATGAAGTATCTTCCAGTGACAATAATTTGTAA
BLAST of CSPI01G15420 vs. Swiss-Prot
Match: TM10A_HUMAN (tRNA methyltransferase 10 homolog A OS=Homo sapiens GN=TRMT10A PE=1 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.2e-35 Identity = 112/331 (33.84%), Postives = 177/331 (53.47%), Query Frame = 1
BLAST of CSPI01G15420 vs. Swiss-Prot
Match: TM10A_MOUSE (tRNA methyltransferase 10 homolog A OS=Mus musculus GN=Trmt10a PE=2 SV=2) HSP 1 Score: 149.4 bits (376), Expect = 6.8e-35 Identity = 99/290 (34.14%), Postives = 153/290 (52.76%), Query Frame = 1
BLAST of CSPI01G15420 vs. Swiss-Prot
Match: TRM10_SCHPO (tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.6e-34 Identity = 109/302 (36.09%), Postives = 171/302 (56.62%), Query Frame = 1
BLAST of CSPI01G15420 vs. Swiss-Prot
Match: TM10A_XENTR (tRNA methyltransferase 10 homolog A OS=Xenopus tropicalis GN=trmt10a PE=2 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.7e-30 Identity = 111/346 (32.08%), Postives = 182/346 (52.60%), Query Frame = 1
BLAST of CSPI01G15420 vs. Swiss-Prot
Match: TM10A_BOVIN (tRNA methyltransferase 10 homolog A OS=Bos taurus GN=TRMT10A PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 6.6e-30 Identity = 111/344 (32.27%), Postives = 174/344 (50.58%), Query Frame = 1
BLAST of CSPI01G15420 vs. TrEMBL
Match: A0A0A0LYJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173210 PE=4 SV=1) HSP 1 Score: 648.7 bits (1672), Expect = 4.0e-183 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
BLAST of CSPI01G15420 vs. TrEMBL
Match: B9T580_RICCO (RNA (Guanine-9-) methyltransferase domain containing, putative OS=Ricinus communis GN=RCOM_1065780 PE=4 SV=1) HSP 1 Score: 442.6 bits (1137), Expect = 4.3e-121 Identity = 239/331 (72.21%), Postives = 272/331 (82.18%), Query Frame = 1
BLAST of CSPI01G15420 vs. TrEMBL
Match: A5AJA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030149 PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 2.8e-120 Identity = 241/332 (72.59%), Postives = 278/332 (83.73%), Query Frame = 1
BLAST of CSPI01G15420 vs. TrEMBL
Match: W9QDU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010619 PE=4 SV=1) HSP 1 Score: 439.5 bits (1129), Expect = 3.7e-120 Identity = 238/327 (72.78%), Postives = 271/327 (82.87%), Query Frame = 1
BLAST of CSPI01G15420 vs. TrEMBL
Match: A0A067KUI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08957 PE=4 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.5e-118 Identity = 238/317 (75.08%), Postives = 266/317 (83.91%), Query Frame = 1
BLAST of CSPI01G15420 vs. TAIR10
Match: AT5G47680.1 (AT5G47680.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 389.4 bits (999), Expect = 2.2e-108 Identity = 215/323 (66.56%), Postives = 255/323 (78.95%), Query Frame = 1
BLAST of CSPI01G15420 vs. NCBI nr
Match: gi|449443504|ref|XP_004139517.1| (PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]) HSP 1 Score: 648.7 bits (1672), Expect = 5.7e-183 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
BLAST of CSPI01G15420 vs. NCBI nr
Match: gi|659128585|ref|XP_008464275.1| (PREDICTED: tRNA (guanine(9)-N1)-methyltransferase isoform X1 [Cucumis melo]) HSP 1 Score: 593.2 bits (1528), Expect = 2.8e-166 Identity = 307/327 (93.88%), Postives = 315/327 (96.33%), Query Frame = 1
BLAST of CSPI01G15420 vs. NCBI nr
Match: gi|659128587|ref|XP_008464276.1| (PREDICTED: tRNA (guanine(9)-N1)-methyltransferase isoform X2 [Cucumis melo]) HSP 1 Score: 467.6 bits (1202), Expect = 1.8e-128 Identity = 243/260 (93.46%), Postives = 250/260 (96.15%), Query Frame = 1
BLAST of CSPI01G15420 vs. NCBI nr
Match: gi|255585408|ref|XP_002533399.1| (PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Ricinus communis]) HSP 1 Score: 442.6 bits (1137), Expect = 6.2e-121 Identity = 239/331 (72.21%), Postives = 272/331 (82.18%), Query Frame = 1
BLAST of CSPI01G15420 vs. NCBI nr
Match: gi|731437668|ref|XP_010647426.1| (PREDICTED: tRNA (guanine(9)-N1)-methyltransferase-like [Vitis vinifera]) HSP 1 Score: 439.9 bits (1130), Expect = 4.0e-120 Identity = 241/332 (72.59%), Postives = 278/332 (83.73%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |