CSPI01G14490 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G14490
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionHemagglutinin
LocationChr1 : 10144509 .. 10145430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGATGTTCTCCTTCGATTTAACATTATTTGTCTGGTATTTATCAAAATAATACATAGAGTAACACCGATAATTTTCGCTCATAGTAATTTTTTATTTAAATATGACTTTTTAAAGTTACATAATAGTAGCTTACATGATTGATTAGAAAGAACTTGAAGCAAATAAAATTCCACCAGGAAACCTCATGCTTTAAACTTCCAGTCTAGAGAAGCTCCACTACTTTGATAACGCACACTAGTATATTGTCAAAGGTGGAATACTGAGGGGAGACGCATTGATTCAAGGGAAATATAAGGAGGAAATGGATAATAGTATTATTTGGAGCGTACTAGGGAGTGGAAGCAATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAACGCCGTGCTTCAGTCAGTTCAATATTGGTTGATGATAGACCCATAAATAAAAGGACAAGAATTAGAAAGCTTTTATTGGAAGCCATGTTAGATAAATGTTTGCTTCAACGCTTACAAT

mRNA sequence

ATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAA

Coding sequence (CDS)

ATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAA
Homology
[Close]
BLAST of CSPI01G14490 vs. TrEMBL
Match: A0A0A0LY65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153560 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 123/154 (79.87%), Postives = 130/154 (84.42%), Query Frame = 1 

Query: 1   MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60
           MFGILGTGILGRGGKSVDGIEGTI GIVVGGTILGMNGIEDNEGTLGIMGGRLGTIG EG
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGSEG 60

Query: 61  NEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS---EG 120
           NEGTPG+MGGRLG +GSEGNEG  G+MGGRLGTIGGKGNEGT GIMGGRLG IGS   EG
Sbjct: 61  NEGTPGVMGGRLGTIGSEGNEGTPGVMGGRLGTIGGKGNEGTPGIMGGRLGTIGSEGNEG 120

Query: 121 IFGIMGERSGMIGNEGNEGTPEITDGMEGNNCGR 152
             G+MG R G IG +GNEGTP +  G  G   G+
Sbjct: 121 TPGVMGGRLGTIGGKGNEGTPGVMGGRLGTIGGK 154

[Close]
BLAST of CSPI01G14490 vs. TrEMBL
Match: F9MNA7_9FIRM (Hemagglutinin (Fragment) OS=Megasphaera sp. UPII 135-E GN=HMPREF1040_1341 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1 

Query: 11  GRGGKSV--DGIEGTISGIVVGGTILGMNGIEDNEGTLGI------MGGRLGTIGGEGNE 70
           G+ G+ V  DG +G I      GT + +NG +   G  G       M G+ GTIG  G +
Sbjct: 442 GKDGEKVTIDGKDGKIESKAKDGTTVTVNGKDGTVGATGADGTTVTMNGKDGTIGATGAD 501

Query: 71  GTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGSEGIFGIM 130
           GT   + G+ G VG++G +G    M G+ GTIGGKG +GT   M  + G IG++G  G  
Sbjct: 502 GTTVTVNGKDGTVGAKGTDGTTVTMNGKDGTIGGKGADGTTVTMNAKDGTIGAQGPKGAN 561

Query: 131 GERSGMIGNEGNEGTPEIT 142
           G+    +   G +G   IT
Sbjct: 562 GKDGASVTINGKDGITTIT 580

[Close]
BLAST of CSPI01G14490 vs. NCBI nr
Match: gi|778659399|ref|XP_011654356.1| (PREDICTED: fibril-forming collagen alpha chain-like [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 7.8e-55
Identity = 127/156 (81.41%), Postives = 131/156 (83.97%), Query Frame = 1 

Query: 1   MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60
           MFGILGTGILGRGGKSVDGIEGTI GIVVGGTILGMNGIEDNEGTLGIMGGRLGTIG EG
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGSEG 60

Query: 61  NEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS---EG 120
           NEGTPG+MGGRLG +GSEGNEG  G+MGGRLGTIGGKGNEGT GIMGGRLG IGS   EG
Sbjct: 61  NEGTPGVMGGRLGTIGSEGNEGTPGVMGGRLGTIGGKGNEGTPGIMGGRLGTIGSEGNEG 120

Query: 121 IFGIMGERSGMIGNEGNEGTPEI------TDGMEGN 148
             GIMG R G IG +GNEGTP I      T G EGN
Sbjct: 121 TLGIMGGRLGTIGGKGNEGTPGIMGGRLGTIGSEGN 156

[Close]
BLAST of CSPI01G14490 vs. NCBI nr
Match: gi|700209815|gb|KGN64911.1| (hypothetical protein Csa_1G153560 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 3.9e-54
Identity = 123/154 (79.87%), Postives = 130/154 (84.42%), Query Frame = 1 

Query: 1   MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60
           MFGILGTGILGRGGKSVDGIEGTI GIVVGGTILGMNGIEDNEGTLGIMGGRLGTIG EG
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGSEG 60

Query: 61  NEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS---EG 120
           NEGTPG+MGGRLG +GSEGNEG  G+MGGRLGTIGGKGNEGT GIMGGRLG IGS   EG
Sbjct: 61  NEGTPGVMGGRLGTIGSEGNEGTPGVMGGRLGTIGGKGNEGTPGIMGGRLGTIGSEGNEG 120

Query: 121 IFGIMGERSGMIGNEGNEGTPEITDGMEGNNCGR 152
             G+MG R G IG +GNEGTP +  G  G   G+
Sbjct: 121 TPGVMGGRLGTIGGKGNEGTPGVMGGRLGTIGGK 154

[Close]
BLAST of CSPI01G14490 vs. NCBI nr
Match: gi|494634339|ref|WP_007392283.1| (hemagglutinin, partial [Megasphaera sp. UPII 135-E])

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1 

Query: 11  GRGGKSV--DGIEGTISGIVVGGTILGMNGIEDNEGTLGI------MGGRLGTIGGEGNE 70
           G+ G+ V  DG +G I      GT + +NG +   G  G       M G+ GTIG  G +
Sbjct: 442 GKDGEKVTIDGKDGKIESKAKDGTTVTVNGKDGTVGATGADGTTVTMNGKDGTIGATGAD 501

Query: 71  GTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGSEGIFGIM 130
           GT   + G+ G VG++G +G    M G+ GTIGGKG +GT   M  + G IG++G  G  
Sbjct: 502 GTTVTVNGKDGTVGAKGTDGTTVTMNGKDGTIGGKGADGTTVTMNAKDGTIGAQGPKGAN 561

Query: 131 GERSGMIGNEGNEGTPEIT 142
           G+    +   G +G   IT
Sbjct: 562 GKDGASVTINGKDGITTIT 580

The following BLAST results are available for this feature:
BLAST of CSPI01G14490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G14490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY65_CUCSA2.7e-5479.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153560 PE=4 SV=1[more]
F9MNA7_9FIRM4.7e-0635.97Hemagglutinin (Fragment) OS=Megasphaera sp. UPII 135-E GN=HMPREF1040_1341 PE=4 S... [more]
BLAST of CSPI01G14490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G14490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659399|ref|XP_011654356.1|7.8e-5581.41PREDICTED: fibril-forming collagen alpha chain-like [Cucumis sativus][more]
gi|700209815|gb|KGN64911.1|3.9e-5479.87hypothetical protein Csa_1G153560 [Cucumis sativus][more]
gi|494634339|ref|WP_007392283.1|6.7e-0635.97hemagglutinin, partial [Megasphaera sp. UPII 135-E][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G14490.1CSPI01G14490.1mRNA