CSPI01G14330 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G14330
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 9945215 .. 9946431 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCATAATTATTTATTTCTTTTAAAACAATAGAAGGGGAAAGAGTCCAACCAAATAGTTCTTCAAATCTAGCTTTTGGGTTTTACATTTGAACATTTTGTATCATCAATCAGACAACATCAAAATAGTCAGCAGTGGATTATGCTTATGAACAACAATTTAAAAAATCAATGCATAAACAAATCATACAATTTGAATTAAAACACAACACCAATAATAATAATCTTATACTTTGATTTCAACCACTTTTGTTGGCCATGGCCATCTCCATTGGATACCAACCCAACACCCTGAAGAACGAAGCATATTCCTTCAACTCCGCCATAGCTTCTTCACCTTTCCCTTCCTCCATTGACGCCTCAAAGTCCGCATAAAACACATACTCAAACCTCTTCACCCTCTCCTCCACTCTCATCGGACAGCTCCGGTGCGGCCTCGATTCAATCTTCGTCAACTTAATGTTCCTCATCGCAAATGCCGCCAGCACCTTGAATAGAGCCGCCGTTCCTTTCTCCAATGCGAACACTACGCTCGTCTTTAACGCCAAACCCGGTTCCGGAATCACCGGATCTCGTGCTAGGACAACGAATCGCGTCACGTTTCTCGAATCGTCTTGGATTCCGTTCTCGAGGATTTCGAGCCCGTACAGCTCGGCGGCGCGTGCGCTAGCGATTGCGGCTGTATCGCGGAGGTTGTTGAGGGCTACGTGTTCGGCGGCGCCGGCGGTATCGTCGAAGGCTTCACGCGCGGCGTTGAGGCCGAGTTTGGTGAGAGTTTGTTCGCATTGAGCTAGGGCTTGAGGATGGGAAATAATTCTTCTGATGGATTCTGATCGGACTCCTGGTAAGGCTAAGAGGCAATGGTGAACCGGTAGTTGAACTTCGCCGATTATGTGGAGGGTATAGCGGAGGAGAAGATCATAGTTACGATGAATAGAACCGCCAAGGGAGTTTTCAATTGGGAGAACGGCGAGATCGGCAATGCGATTCTCAACCGATTGAAAGGCAGTTTCGAATTGATCGCAGGGGATTGTTACGCAGTTAGGGCAGGCTTTGCCGGCGGCGGCTTCGGAGTAAGCACCGGGAACCCCTTGGTAAGCGACGTGAAGCTTTTGAGCGCCCATTGAAGCCGGAGACTACTTTCCGACGGTTGCGACGGCGTAGCCCTTGAGTTTTTCTTTGTTATTGAGTAATTTACAAAGTGGGTGGACAGAAATG

mRNA sequence

ATGTTCCTCATCGCAAATGCCGCCAGCACCTTGAATAGAGCCGCCGTTCCTTTCTCCAATGCGAACACTACGCTCGTCTTTAACGCCAAACCCGGTTCCGGAATCACCGGATCTCGTGCTAGGACAACGAATCGCGTCACGTTTCTCGAATCGTCTTGGATTCCGTTCTCGAGGATTTCGAGCCCGTACAGCTCGGCGGCGCGTGCGCTAGCGATTGCGGCTGTATCGCGGAGGTTGTTGAGGGCTACGTGTTCGGCGGCGCCGGCGGTATCGTCGAAGGCTTCACGCGCGGCGTTGAGGCCGAGTTTGGTGAGAGTTTGTTCGCATTGA

Coding sequence (CDS)

ATGTTCCTCATCGCAAATGCCGCCAGCACCTTGAATAGAGCCGCCGTTCCTTTCTCCAATGCGAACACTACGCTCGTCTTTAACGCCAAACCCGGTTCCGGAATCACCGGATCTCGTGCTAGGACAACGAATCGCGTCACGTTTCTCGAATCGTCTTGGATTCCGTTCTCGAGGATTTCGAGCCCGTACAGCTCGGCGGCGCGTGCGCTAGCGATTGCGGCTGTATCGCGGAGGTTGTTGAGGGCTACGTGTTCGGCGGCGCCGGCGGTATCGTCGAAGGCTTCACGCGCGGCGTTGAGGCCGAGTTTGGTGAGAGTTTGTTCGCATTGA
Homology
[Close]
BLAST of CSPI01G14330 vs. TrEMBL
Match: A0A0A0LY47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145975 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-47
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFLESSWIPFSRIS 60
           MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFL+SSWIPFSRIS
Sbjct: 1   MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFLKSSWIPFSRIS 60

Query: 61  SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH 110
           SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH
Sbjct: 61  SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH 109

[Close]
BLAST of CSPI01G14330 vs. TrEMBL
Match: A0A0E0GFT0_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = 1 

Query: 5   ANAASTLNRAAVP-FSNANTTLVFNAKPGSGITGSRARTTNRVTFLESSWIPFSRISSPY 64
           A A STL    VP  S ANT LV N +   G+ GSRA  TNRVTF  SSW+P +   SPY
Sbjct: 37  AKADSTLKSTDVPSLSCANTMLVLNGRSVRGMMGSRASITNRVTFPASSWMPSASTWSPY 96

Query: 65  SSAARALAIAA 75
           SSAAR  A+AA
Sbjct: 97  SSAAREDAMAA 107

[Close]
BLAST of CSPI01G14330 vs. NCBI nr
Match: gi|700209800|gb|KGN64896.1| (hypothetical protein Csa_1G145975 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-47
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFLESSWIPFSRIS 60
           MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFL+SSWIPFSRIS
Sbjct: 1   MFLIANAASTLNRAAVPFSNANTTLVFNAKPGSGITGSRARTTNRVTFLKSSWIPFSRIS 60

Query: 61  SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH 110
           SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH
Sbjct: 61  SPYSSAARALAIAAVSRRLLRATCSAAPAVSSKASRAALRPSLVRVCSH 109

The following BLAST results are available for this feature:
BLAST of CSPI01G14330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G14330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY47_CUCSA2.3e-4799.08Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145975 PE=4 SV=1[more]
A0A0E0GFT0_ORYNI2.0e-0656.34Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
BLAST of CSPI01G14330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G14330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209800|gb|KGN64896.1|3.3e-4799.08hypothetical protein Csa_1G145975 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G14330.1CSPI01G14330.1mRNA