CSPI01G13970 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13970
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Histone H2B
Location	Chr1 : 9542902 .. 9543529 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGAACTCACTTTTGCTCGCATCTAATCTTCGATAAAACCTCAAACTCCTTCGTTATATTTAGCAATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACATGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAGATTCATAGATTTTAGGGTTTTCTCGTGTAAAAAAGCAGGATCACTGTTCTGGATCGTTGATTTCTTTTGCTCTTGTTGCATATTTTGGAATTGAATGAATGAAAATCGGTTTACATGATTCTAATTCTTTTG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACATGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACATGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Homology

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BLAST of CSPI01G13970 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-58
Identity = 129/145 (88.97%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDAS---DKKKKRAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEK PAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CSPI01G13970 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 224.2 bits (570), Expect = 9.3e-58
Identity = 130/147 (88.44%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK-AEKTPAEKKPRAEKKLPKD----ASDKKKKRAKKSIETY 60
           MAPKAEKKPAEKKPA E+K  AEK PAEKKP+A KKLPK+    A DKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CSPI01G13970 vs. Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 132/146 (90.41%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 1   MAPKAE--KKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDAS--DKKKKRAKKSIETYK 60
           MAPKA   KKPAEKKP  EEKKAE+ PAEKKP+A KKLPKDA   DKKKKRAKKSIETYK
Sbjct: 1   MAPKAAAGKKPAEKKPV-EEKKAEEVPAEKKPKAGKKLPKDAGRPDKKKKRAKKSIETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 143
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CSPI01G13970 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK--AEKTPAEKKPRAEKKLPKD----ASDKKKKRAKKSIET 60
           MAPK EKKPAEKKPA E+K   AEK PAEKKP+A KKLPK+    A +KKKKR+KKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CSPI01G13970 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 130/150 (86.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKTPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEK PAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13970 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-64
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13970 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-64
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13970 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-60
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEK PAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13970 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.1e-60
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEK PAEKKPRAEKKLPK+A DK+KKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13970 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.1e-60
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+K PAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13970 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-59
Identity = 129/145 (88.97%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDAS---DKKKKRAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEK PAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CSPI01G13970 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 222.6 bits (566), Expect = 1.5e-58
Identity = 130/150 (86.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKTPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEK PAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13970 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 222.6 bits (566), Expect = 1.5e-58
Identity = 130/148 (87.84%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKTPAEKKPRAEKKLP-KDASDKKKKRAKKSIET 60
           MAP+AEKKPAEKK AAE      K AEK PAEKKP+A KKLP K+A DKKKKR+KK++ET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CSPI01G13970 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 2.6e-58
Identity = 130/150 (86.67%), Postives = 135/150 (90.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKTPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAP+AEKKPAEKKPAAE+      KAEK PAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13970 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-57
Identity = 130/151 (86.09%), Postives = 134/151 (88.74%), Query Frame = 1


Query: 1   MAPKA-----EKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDAS----DKKKKRAKKS 60
           MAPKA     EKKPAEK PA EEK AEK PAEKKP+A KKLPK+A     +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CSPI01G13970 vs. NCBI nr
Match: gi|449443375|ref|XP_004139453.1| (PREDICTED: histone H2B.7-like [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-64
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13970 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 8.7e-64
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13970 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-60
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEK PAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13970 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 239.2 bits (609), Expect = 4.5e-60
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEK PAEKKPRAEKKLPK+A DK+KKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13970 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 239.2 bits (609), Expect = 4.5e-60
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+K PAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of CSPI01G13970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B7_ARATH	3.2e-58	88.97	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B_GOSHI	9.3e-58	88.44	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B_CAPAN	2.7e-57	90.41	Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3	[more]
H2B1_MEDTR	2.7e-57	87.16	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B11_ARATH	2.7e-57	86.67	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]

BLAST of CSPI01G13970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LST8_CUCSA	1.6e-64	100.00	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]
A0A0A0LV55_CUCSA	6.0e-64	99.30	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	1.4e-60	95.77	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	3.1e-60	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	3.1e-60	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]

BLAST of CSPI01G13970 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	1.8e-59	88.97	Histone superfamily protein	[more]
AT5G59910.1	1.5e-58	86.67	Histone superfamily protein	[more]
AT1G07790.1	1.5e-58	87.84	Histone superfamily protein	[more]
AT3G45980.1	2.6e-58	86.67	Histone superfamily protein	[more]
AT2G28720.1	2.2e-57	86.09	Histone superfamily protein	[more]

BLAST of CSPI01G13970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443375\|ref\|XP_004139453.1\|	2.3e-64	100.00	PREDICTED: histone H2B.7-like [Cucumis sativus]	[more]
gi\|778659255\|ref\|XP_011654070.1\|	8.7e-64	99.30	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|823172029\|ref\|XP_012484994.1\|	2.0e-60	95.77	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	4.5e-60	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	4.5e-60	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13970.1	CSPI01G13970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 5.3E-49coord: 74..94 score: 5.3E-49coord: 96..113 score: 5.3E-49coord: 113..126 score: 5.3E-49coord: 55..73 score: 5.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..142 score: 5.7E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 score: 1.1
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..118 score: 7.7
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 23..142 score: 3.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 27..142 score: 1.39

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G13970	Cla001053	Watermelon (97103) v1	cpiwmB057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13970	Cucurbita moschata (Rifu)	cmocpiB148
CSPI01G13970	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13970	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13970	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13970	Watermelon (Charleston Gray)	cpiwcgB017
CSPI01G13970	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13970	Cucurbita pepo (Zucchini)	cpecpiB805
CSPI01G13970	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13970	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13970	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13970	Silver-seed gourd	carcpiB0192
CSPI01G13970	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13970	Watermelon (97103) v2	cpiwmbB002
CSPI01G13970	Wax gourd	cpiwgoB049
CSPI01G13970	Cucumber (Gy14) v1	cgycpiB318
CSPI01G13970	Cucurbita maxima (Rimu)	cmacpiB163
CSPI01G13970	Cucurbita maxima (Rimu)	cmacpiB205