CSPI01G13860 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPhotosystem II protein D1
LocationChr1 : 9472890 .. 9473625 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAGTTCCATCTATCAATGGAATCATTAAACAATTTTTGTTTTTTGACAAAATAACATTATATATATATATTGTTTTTACTTTGTTTCTAATCTAATAATTTAGAATTTTCGATACCTATATTAGGAGTATAGGGTGTGTATGTGCGACTCGTTTAGACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG

mRNA sequence

ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG

Coding sequence (CDS)

ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG
Homology
[Close]
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_SINAL (Photosystem II protein D1 OS=Sinapis alba GN=psbA PE=3 SV=3)

HSP 1 Score: 295.4 bits (755), Expect = 4.4e-79
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAAV++
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVES 348

[Close]
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_MANES (Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_OENEH (Photosystem II protein D1 OS=Oenothera elata subsp. hookeri GN=psbA PE=3 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_MEDSA (Photosystem II protein D1 OS=Medicago sativa GN=psbA PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_POPTR (Photosystem II protein D1 OS=Populus trichocarpa GN=psbA PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A0K0K8D4_9CARY (Photosystem II protein D1 OS=Haloxylon persicum GN=psbA PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAA++T
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAIET 348

[Close]
BLAST of CSPI01G13860 vs. TrEMBL
Match: T1QQS2_ALLTN (Photosystem II protein D1 OS=Allosyncarpia ternata GN=psbA PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD 178
           IINRA+LGMEVMHERNAHNFPLDLAAV+   R+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVEVPSRN 352

[Close]
BLAST of CSPI01G13860 vs. TrEMBL
Match: G9IIV2_MILPI (Photosystem II protein D1 OS=Millettia pinnata GN=psbA PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAA++T
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAIET 348

[Close]
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A0K0K853_9CARY (Photosystem II protein D1 OS=Haloxylon ammodendron GN=psbA PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAA++T
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAIET 348

[Close]
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A151UID1_CAJCA (Photosystem Q(B) protein OS=Cajanus cajan GN=KK1_049197 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.9e-77
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 1 

Query: 8   YPVTWILQI-PLERNERYLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ 67
           +P T +  I P+ +     GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ
Sbjct: 135 FPATAVFLIYPIGQGSFSDGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ 194

Query: 68  EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN 127
           EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN
Sbjct: 195 EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN 254

Query: 128 FNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK 173
           FNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 255 FNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 300

[Close]
BLAST of CSPI01G13860 vs. TAIR10
Match: ATCG00020.1 (ATCG00020.1 photosystem II reaction center protein A)

HSP 1 Score: 294.7 bits (753), Expect = 4.3e-80
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]
BLAST of CSPI01G13860 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG--QEEETYNIVAAHGYFGR 84
           +GVAGV G +L  A+HG+ V ++L  +    + AN    F   Q EETY++V A+ ++ +
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFED---GDGANTFRAFNPTQAEETYSMVTANRFWSQ 259

Query: 85  LIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 128
           +     +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 260 IFG--VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299

[Close]
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|910354297|ref|YP_009160782.1| (photosystem II protein D1 (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAA++T
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAIET 348

[Close]
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|545719407|ref|YP_008578068.1| (photosystem II protein D1 (chloroplast) [Allosyncarpia ternata])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD 178
           IINRA+LGMEVMHERNAHNFPLDLAAV+   R+
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVEVPSRN 352

[Close]
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|374249517|ref|YP_005088787.1| (photosystem II protein D1 (chloroplast) [Millettia pinnata])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVKT 174
           IINRA+LGMEVMHERNAHNFPLDLAA++T
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAIET 348

[Close]
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|824055244|gb|AKI84890.1| (photosystem II protein D1 (chloroplast) [Geranium nodosum])

HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 25  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 84
           LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

Query: 85  FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 144
           FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD
Sbjct: 260 FQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319

Query: 145 IINRAHLGMEVMHERNAHNFPLDLAAVK 173
           IINRA+LGMEVMHERNAHNFPLDLAAVK
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLAAVK 347

[Close]
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|1012367864|gb|KYP79045.1| (Photosystem Q(B) protein [Cajanus cajan])

HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 1 

Query: 8   YPVTWILQI-PLERNERYLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ 67
           +P T +  I P+ +     GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ
Sbjct: 135 FPATAVFLIYPIGQGSFSDGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQ 194

Query: 68  EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN 127
           EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN
Sbjct: 195 EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFN 254

Query: 128 FNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK 173
           FNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Sbjct: 255 FNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 300

The following BLAST results are available for this feature:
BLAST of CSPI01G13860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBA_SINAL4.4e-7997.99Photosystem II protein D1 OS=Sinapis alba GN=psbA PE=3 SV=3[more]
PSBA_MANES7.6e-7998.65Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1[more]
PSBA_OENEH7.6e-7998.65Photosystem II protein D1 OS=Oenothera elata subsp. hookeri GN=psbA PE=3 SV=2[more]
PSBA_MEDSA7.6e-7998.65Photosystem II protein D1 OS=Medicago sativa GN=psbA PE=3 SV=1[more]
PSBA_POPTR7.6e-7998.65Photosystem II protein D1 OS=Populus trichocarpa GN=psbA PE=2 SV=1[more]
BLAST of CSPI01G13860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K0K8D4_9CARY2.2e-7797.99Photosystem II protein D1 OS=Haloxylon persicum GN=psbA PE=3 SV=1[more]
T1QQS2_ALLTN2.2e-7796.08Photosystem II protein D1 OS=Allosyncarpia ternata GN=psbA PE=3 SV=1[more]
G9IIV2_MILPI2.2e-7797.99Photosystem II protein D1 OS=Millettia pinnata GN=psbA PE=3 SV=1[more]
A0A0K0K853_9CARY2.2e-7797.99Photosystem II protein D1 OS=Haloxylon ammodendron GN=psbA PE=3 SV=1[more]
A0A151UID1_CAJCA2.9e-7789.76Photosystem Q(B) protein OS=Cajanus cajan GN=KK1_049197 PE=4 SV=1[more]
BLAST of CSPI01G13860 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00020.14.3e-8098.65ATCG00020.1 photosystem II reaction center protein A[more]
ATCG00270.11.0e-1238.10ATCG00270.1 photosystem II reaction center protein D[more]
BLAST of CSPI01G13860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|910354297|ref|YP_009160782.1|3.2e-7797.99photosystem II protein D1 (chloroplast) [Haloxylon ammodendron][more]
gi|545719407|ref|YP_008578068.1|3.2e-7796.08photosystem II protein D1 (chloroplast) [Allosyncarpia ternata][more]
gi|374249517|ref|YP_005088787.1|3.2e-7797.99photosystem II protein D1 (chloroplast) [Millettia pinnata][more]
gi|824055244|gb|AKI84890.1|4.2e-7799.32photosystem II protein D1 (chloroplast) [Geranium nodosum][more]
gi|1012367864|gb|KYP79045.1|4.2e-7789.76Photosystem Q(B) protein [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000484Photo_RC_L/M
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009772photosynthetic electron transport in photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13860.1CSPI01G13860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3DG3DSA:1.20.85.10coord: 24..137
score: 4.7
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 24..146
score: 1.0
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 24..168
score: 4.45
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 25..189
score: 3.8E
NoneNo IPR availablePANTHERPTHR33149:SF4PHOTOSYSTEM Q(B) PROTEINcoord: 25..189
score: 3.8E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13860Melon (DHL92) v3.6.1cpimedB011
CSPI01G13860Cucumber (Gy14) v2cgybcpiB001
CSPI01G13860Silver-seed gourdcarcpiB0192
CSPI01G13860Cucumber (Chinese Long) v3cpicucB001
CSPI01G13860Watermelon (97103) v2cpiwmbB002
CSPI01G13860Wax gourdcpiwgoB049
CSPI01G13860Cucumber (Gy14) v1cgycpiB318
CSPI01G13860Cucurbita maxima (Rimu)cmacpiB163
CSPI01G13860Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13860Cucurbita moschata (Rifu)cmocpiB148
CSPI01G13860Cucurbita moschata (Rifu)cmocpiB192
CSPI01G13860Cucumber (Chinese Long) v2cpicuB000
CSPI01G13860Melon (DHL92) v3.5.1cpimeB011
CSPI01G13860Watermelon (Charleston Gray)cpiwcgB017
CSPI01G13860Watermelon (97103) v1cpiwmB057
CSPI01G13860Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13860Cucurbita pepo (Zucchini)cpecpiB805
CSPI01G13860Bottle gourd (USVL1VR-Ls)cpilsiB046