CSPI01G13860 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAGTTCCATCTATCAATGGAATCATTAAACAATTTTTGTTTTTTGACAAAATAACATTATATATATATATTGTTTTTACTTTGTTTCTAATCTAATAATTTAGAATTTTCGATACCTATATTAGGAGTATAGGGTGTGTATGTGCGACTCGTTTAGACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAG
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_SINAL (Photosystem II protein D1 OS=Sinapis alba GN=psbA PE=3 SV=3) HSP 1 Score: 295.4 bits (755), Expect = 4.4e-79 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_MANES (Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79 Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_OENEH (Photosystem II protein D1 OS=Oenothera elata subsp. hookeri GN=psbA PE=3 SV=2) HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79 Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_MEDSA (Photosystem II protein D1 OS=Medicago sativa GN=psbA PE=3 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79 Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. Swiss-Prot
Match: PSBA_POPTR (Photosystem II protein D1 OS=Populus trichocarpa GN=psbA PE=2 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 7.6e-79 Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A0K0K8D4_9CARY (Photosystem II protein D1 OS=Haloxylon persicum GN=psbA PE=3 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. TrEMBL
Match: T1QQS2_ALLTN (Photosystem II protein D1 OS=Allosyncarpia ternata GN=psbA PE=3 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77 Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1
BLAST of CSPI01G13860 vs. TrEMBL
Match: G9IIV2_MILPI (Photosystem II protein D1 OS=Millettia pinnata GN=psbA PE=3 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A0K0K853_9CARY (Photosystem II protein D1 OS=Haloxylon ammodendron GN=psbA PE=3 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. TrEMBL
Match: A0A151UID1_CAJCA (Photosystem Q(B) protein OS=Cajanus cajan GN=KK1_049197 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 2.9e-77 Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 1
BLAST of CSPI01G13860 vs. TAIR10
Match: ATCG00020.1 (ATCG00020.1 photosystem II reaction center protein A) HSP 1 Score: 294.7 bits (753), Expect = 4.3e-80 Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D) HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12 Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|910354297|ref|YP_009160782.1| (photosystem II protein D1 (chloroplast) [Haloxylon ammodendron]) HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|545719407|ref|YP_008578068.1| (photosystem II protein D1 (chloroplast) [Allosyncarpia ternata]) HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77 Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|374249517|ref|YP_005088787.1| (photosystem II protein D1 (chloroplast) [Millettia pinnata]) HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|824055244|gb|AKI84890.1| (photosystem II protein D1 (chloroplast) [Geranium nodosum]) HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of CSPI01G13860 vs. NCBI nr
Match: gi|1012367864|gb|KYP79045.1| (Photosystem Q(B) protein [Cajanus cajan]) HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77 Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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